Markus Fricke

DSC_0408_2

Dr. rer. nat. Markus Fricke

RNA Bioinformatics and High Throughput Analysis Jena
Friedrich Schiller University Jena
Faculty of Mathematics and Computer Science
Leutragraben 1
07743 Jena

E-Mail: markus.fricke2*
Skype: m.fricke2
Room: N0803
Phone: +49-3641-9-46485

*@uni-jena.de

Conferences
CV

Publications

2016

M, Hölzer; V, Krähling; F, Amman; E, Barth; H, Bernhart; O, Carmelo; M, Collatz; G, Doose; F, Eggenhofer; J, Ewald; J, Fallmann; M, Feldhahn; M, Fricke; J, Gebauer; J, Gruber; F, Hufsky; H, Indrischek; S, Kanton; J, Linde; N, Mostajo; R, Ochsenreiter; K, Riege; L, Rivarola-Duarte; H, Sahyoun; J, Saunders; E, Seemann; A, Tanzer; B, Vogel; S, Wehner; T, Wolfinger; R, Backofen; J, Gorodkin; I, Grosse; I, Hofacker; S, Hoffmann; C, Kaleta; F, Stadler; S, Becker; M, Marz

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells (Journal Article)

Scientific Reports (Nature PG), 6 (34589 ), 2016.

(Abstract | Links | BibTeX)

K, Gerresheim; N, Dünnes; A, Nieder-Röhrmann; A, Shalamova; M, Fricke; I, Hofacker; zu C, Höner Siederdissen; M, Marz; M, Niepmann

microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure (Journal Article)

Cellular and Molecular Life Sciences, pp. 1–14, 2016.

(Links | BibTeX)

M, Fricke; M, Marz

Prediction of conserved long-range RNA-RNA interactions in full viral genomes (Journal Article)

Bioinformatics (Oxford, England), 2016, ISSN: 1367-4811.

(Abstract | Links | BibTeX)

R, Madhugiri; M, Fricke; M, Marz; J, Ziebuhr

Coronavirus cis-Acting RNA Elements (Book Chapter)

Advances in Virus Research, 95 , pp. 2-227, Elsevier, 2016, ISBN: 978-0-12-804820-7 .

(Abstract | Links | BibTeX)

2015

M, Fricke; N, Dünnes; M, Zayas; R, Bartenschlager; M, Niepmann; M, Marz

Conserved RNA secondary structures and long-range interactions in hepatitis C viruses (Journal Article)

RNA, 21 (7), pp. 1219-1232, 2015.

(Abstract | Links | BibTeX)

2014

R, Madhugiri; M, Fricke; M, Marz; J, Ziebuhr

RNA structure analysis of alphacoronavirus terminal genome regions (Journal Article)

Virus Res, 194 , pp. 76-89, 2014.

(Abstract | Links | BibTeX)

M, Marz; N, Beerenwinkel; C, Drosten; M, Fricke; D, Frishman; L, Hofacker; D, Hoffmann; M, Middendorf; T, Rattei; F, Stadler; A, Töpfer

Challenges in RNA virus bioinformatics (Journal Article)

Bioinformatics, 30 (13), pp. 1793-1799, 2014.

(Abstract | Links | BibTeX)

J, Qin; M, Fricke; M, Marz; F, Stadler; R, Backofen

Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures (Journal Article)

Algorithms Mol Biol, 9 , pp. 19-19, 2014.

(Abstract | Links | BibTeX)

2013

R, Backofen; M, Fricke; M, Marz; J, Qin; F, Stadler

Distribution of graph-distances in Boltzmann ensembles of RNA secondary structures (Incollection)

Algorithms in Bioinformatics, pp. 112–125, Springer, 2013.

(Abstract | BibTeX)

Conferences

05/2017 Central German Meeting on Bioinformatics 2017, Leipzig, Germany Talk
03/2017 27th Annual Meeting of the Society for Virology, Marburg, Germany Poster
02/2017 32. TBI Winterseminar, Bled, Slovenia Participant
10/2016 Computational RNA Biology 2016, Hinxton, England Poster
10/2016 14th Herbstseminar der Bioinformatik, Doubice, Czech Republic Talk
04/2016 26th Annual Meeting of the Society for Virology, Münster, Germany Talk
03/2016 DFG-Workshop, Mishima, Japan Talk
02/2016 31th TBI Winterseminar, Bled, Slovenia Talk
01/2016 Viruses 2016 – At the Forefront of Virus-Host Interactions, Basel, Switzerland Poster
10/2015 13th Herbstseminar der Bioinformatik, Doubice, Czech Republic Talk
08/2015 Central German Meeting on Bioinformatics 2015, Halle, Germany Poster
03/2015 25th Annual Meeting of the Society for Virology, Bochum, Germany Poster
02/2015 30th TBI Winterseminar, Bled, Slovenia Talk
10/2014 12th Herbstseminar der Bioinformatik, Doubice, Czech Republic Talk
02/2014 29th TBI Winterseminar, Bled, Slovenia Talk
10/2013 11th Herbstseminar der Bioinformatik, Doubice, Czech Republic Talk
02/2013 28th TBI Winterseminar, Bled, Slovenia Talk
10/2012 Virus goes Bioinformatics, Jena, Germany Co-Organiser
10/2012 10th Herbstseminar der Bioinformatik, Doubice, Czech Republic Talk
09/2012 German Conference on Bioinformatics 2012, Jena, Germany

CV

since 07/2016
PostDoc at Friedrich Schiller University, Jena
RNA Bioinformatics and High Throughput Analysis
07/2016
Doctorate degree: Dr. rer. nat.
Friedrich Schiller University
Doctoral Thesis: „RNA structure analysis and conserved long-range RNA-RNA interaction prediction of full viral RNA genomes“
Prof. Dr. Manja Marz, RNA Bioinformatics, Faculty of Mathematics and Computer Science
07/2012 – 07/2016 PhD. Student at Friedrich Schiller University, Jena
RNA Bioinformatics and High Throughput Analysis
10/2007 – 06/2012 Study of Bioinformatics at Friedrich Schiller University, Jena
Diploma thesis: “UV-Laser ChIP-Seq in vivo: Bioinformatische Analyse von genomweiten Protein-DNA-Interaktionen.”