Publications

72 entries « 2 of 2 »

2011

Marz M, Stadler P F

RNA interactions (Journal Article)

Adv. Exp. Med. Biol., 722 , pp. 20–38, 2011.

(BibTeX)

Marz M, Gruber A R, Höner Zu Siederdissen C, Amman F, Badelt S, Bartschat S, Bernhart S H, Beyer W, Kehr S, Lorenz R, Tanzer A, Yusuf D, Tafer H, Hofacker I L, Stadler P F

Animal snoRNAs and scaRNAs with exceptional structures (Journal Article)

RNA Biol, 8 (6), pp. 938-946, 2011.

(Links | BibTeX)

2010

Donath A, Findeiss S, Hertel J, Marz M, Otto W, Schulz C, Stadler P F, Wirth S

Non-coding RNA (Book Chapter)

Caetano-Anoll G (Ed.): Evolutionary Genomics and Systems Biology, John Wiley & Sons, Hoboken, NJ, USA, 2010.

(BibTeX)

Yusuf D, Marz M, Stadler P F, Hofacker I

Bcheck: a wrapper tool for detecting RNase P RNA genes (Journal Article)

BMC Genomics, 11 , pp. 432-432, 2010.

(Abstract | Links | BibTeX)

Dalloul R A, Long J A, Zimin A V, Aslam L, Beal K, Blomberg L e A n n, Bouffard P, Burt D W, Crasta O, Crooijmans R P, Cooper K, Coulombe R A, De S, Delany M E, Dodgson J B, Dong J J, Evans C, Frederickson K M, Flicek P, Florea L, Folkerts O, Groenen M A, Harkins T T, Herrero J, Hoffmann S, Megens H J, Jiang A, de Jong P, Kaiser P, Kim H, Kim K W, Kim S, Langenberger D, Lee M K, Lee T, Mane S, Marcais G, Marz M, McElroy A P, Modise T, Nefedov M, Notredame C, Paton I R, Payne W S, Pertea G, Prickett D, Puiu D, Qioa D, Raineri E, Ruffier M, Salzberg S L, Schatz M C, Scheuring C, Schmidt C J, Schroeder S, Searle S M, Smith E J, Smith J, Sonstegard T S, Stadler P F, Tafer H, Tu Z J, Van Tassell C P, Vilella A J, Williams K P, Yorke J A, Zhang L, Zhang H B, Zhang X, Zhang Y, Reed K

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis (Journal Article)

PLoS Biol, 8 (9), 2010.

(Abstract | Links | BibTeX)

Marz M, Vanzo N, Stadler P F

Temperature-dependent structural variability of RNAs: spliced leader RNAs and their evolutionary history (Journal Article)

Journal of bioinformatics and computational biology, 8 (01), pp. 1–17, 2010.

(Links | BibTeX)

2009

Marz M, Donath A, Verstraete N, Nguyen V T, Stadler P F, Bensaude O

Evolution of 7SK RNA and its protein partners in metazoa (Journal Article)

Mol Biol Evol, 26 (12), pp. 2821-2830, 2009.

(Abstract | Links | BibTeX)

Ingalls T, Martius G, Marz M, Prohaska S J

Converting DNA to music: ComposAlign (Proceeding)

Halle, 2009.

(BibTeX)

Marz M, Wolf R

Aktivitätsmuster von Brandmäusen (Apodemus agrarius Pallas, 1771) in urbanen Lebensräumen (Journal Article)

Mitteilungen fuer Sächsische Wirbeltierfreunde, 2009.

(BibTeX)

Hiller M, Findeiss S, Lein S, Marz M, Nickel C, Rose D, Schulz C, Backofen R, Prohaska S J, Reuter G, Stadler P F

Conserved introns reveal novel transcripts in Drosophila melanogaster (Journal Article)

Genome Res, 19 (7), pp. 1289-1300, 2009.

(Abstract | Links | BibTeX)

Hertel J, de Jong D, Marz M, Rose D, Tafer H, Tanzer A, Schierwater B, Stadler P F

Non-coding RNA annotation of the genome of Trichoplax adhaerens (Journal Article)

Nucleic Acids Res, 37 (5), pp. 1602-1615, 2009.

(Abstract | Links | BibTeX)

Copeland C S, Marz M, Rose D, Hertel J, Brindley P J, Santana C B, Kehr S, Attolini C S, Stadler P F

Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum (Journal Article)

BMC Genomics, 10 , pp. 464-464, 2009.

(Abstract | Links | BibTeX)

Jones T A, Otto W, Marz M, Eddy S R, Stadler P F

A survey of nematode SmY RNAs (Journal Article)

RNA Biol, 6 (1), pp. 5-8, 2009.

(Abstract | Links | BibTeX)

Marz M, Stadler P F

Comparative analysis of eukaryotic U3 snoRNA (Journal Article)

RNA Biol, 6 (5), pp. 503-507, 2009.

(Abstract | Links | BibTeX)

2008

Marz M, Kirsten T, Stadler P F

Evolution of spliceosomal snRNA genes in metazoan animals (Journal Article)

J Mol Evol, 67 (6), pp. 594-607, 2008.

(Abstract | Links | BibTeX)

Gruber A R, Koper-Emde D, Marz M, Tafer H, Bernhart S, Obernosterer G, Mosig A, Hofacker I L, Stadler P F, Benecke B

Invertebrate 7SK snRNAs (Journal Article)

J Mol Evol, 66 (2), pp. 107-115, 2008.

(Abstract | Links | BibTeX)

2007

Marz M, Mosig A, Stadler B M, Stadler P F

U7 snRNAs: a computational survey (Journal Article)

Genomics Proteomics Bioinformatics, 5 (3-4), pp. 187-195, 2007.

(Abstract | Links | BibTeX)

ENCODE Project Consortium, et al

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (Journal Article)

Nature, 447 (7146), pp. 799-816, 2007.

(Abstract | Links | BibTeX)

Washietl S, Pedersen J S, Korbel J O, Stocsits C, Gruber A R, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis S E, Denoeud F, Lagarde J, Drenkow J, Kapranov P, Gingeras T R, Guig'o R, Snyder M, Gerstein M B, Reymond A, Hofacker I L, Stadler P F

Structured RNAs in the ENCODE selected regions of the human genome (Journal Article)

Genome Res, 17 (6), pp. 852-864, 2007.

(Abstract | Links | BibTeX)

2006

Lindemeyer M

Evolution of snRNAs (Masters Thesis)

2006, (Diploma thesis in Computer Science).

(BibTeX)

Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker I L, Stadler P F

The expansion of the metazoan microRNA repertoire (Journal Article)

BMC Genomics, 7 , pp. 25-25, 2006.

(Abstract | Links | BibTeX)

2005

Lindemeyer M

Arbeiten zur evolutiven Optimierung des HI-Virus (Masters Thesis)

2005, (Diploma thesis in Biology).

(BibTeX)

72 entries « 2 of 2 »