Welcome to The RNA World Website

formerly hosted by Leibniz Institute for Age Research - Fritz Lipmann Institute Jena.

The RNA World Website provides a collection of links to RNA-related information. It was launched in 1995 and has been maintained over the years by Jürgen Sühnel affiliated with the Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI), formerly known as Institute of Molecular Biotechnology (IMB), located in Jena/Germany. From now on, responsibility is taken over by Manja Marz.

Contact to Jürgen Sühnel:



Databases

Sequences, Secondary structures, Other

Three-dimensional structures (coordinates and images)


Software

Web Tools
Downloads
  1. 3DNA (Versatile package for analyzing and rebuilding 3-dimensional nucleic acid structure)
  2. Bielefeld RNA Studio (Multiple tools for RNA analysis from Bielefeld)
  3. CARD (RNA secondary structure drawing)
  4. ERPIN - Easy RNA Profile IdentificatioN
  5. ESSA (RNA secondary structure analysis tool)
  6. Freiburg RNA Tools (Prediction of RNA-RNA interactions, exact RNA matching and RNA alignments)
  7. INFERNAL (Inference of RNA secondary structure alignments)
  8. Mc-Sym (Molecular modeling using constraint satisfaction)
  9. NAMOT - Nucleic Acid MOdeling Tool [for Linux 32/64, Unix 32/64 bit, Mac OS]
  10. PKNOTs (RNA pseudoknot prediction)
  11. QRNA (ncRNA genefinder)
  12. RALEE - RNA ALignment Editor in Emacs
  13. RNABOB (Pattern searching for RNA secondary structures)
  14. RNACAD (Stochastic context-free grammar RNA modeling package, that accounts for both primary and secondary structure information)
  15. RNAdraw
  16. RNAMLview/RNAView (Generates 2-dimensional displays of RNA/DNA secondary structures with tertiary interactions)
  17. RNA Movies (Visualizing RNA secondary structure spaces)
  18. RNAMotif
  19. RnaViz (secondary structure drawing of RNA)
  20. SStructView (RNA secondary structure Java applet)
  21. tRNAscan-SE (tRNA detection in large-scale genome sequences)
  22. Vienna RNA package (RNA secondary structure prediction and comparison)
  23. Yammp (modeling and refinement of low-resolution nucleic acid models)
  1. For Linux 32/64 bit, Mac OS, Windows Cygwin/MinGW/MSYS, Sun OS 5.9, SGI IRIX64
  2. For Linux 32/64 bit, Unix 32/64 bit, Windows 32 bit
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  4. For Linux 32/64 bit
  5. For Linux 32/64 bit, Unix from HP-UX 9.0, SGI from IRIX 5.3, Sun from Solaris 2.4
  6. For Linux 32/64 bit
  7. For Linux 32/64 bit, Unix 32/64 bit
  8. For Linux glibc 2.3, SGI IRIX 6.5, Sun OS 5.9
  9. For Linux 32/64, Unix 32/64 bit, Mac OS
  10. For Linux 32/64 bit, Unix 32/64 bit
  11. For Linux 32/64 bit, Unix 32/64 bit
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  13. For Linux 32/64 bit, Unix 32/64 bit, SGI Indigo2 R4400, SGI IRIX 5.3, Sun Ultra-1, Sun Solaris 2.5, DEC Alpha, DEC OSF/1 V3.2
  14. For Linux 32/64 bit, Unix 32/64
  15. For Windows 32 bit
  16. For Linux 32/64 bit, Unix 32/64 bit, Sun OS, Mac OS

  17. For Linux 32/64 bit, Unix 32/64 bit, Mac OS, Windows 32/64 bit
  18. For Linux 32/64 bit, Unix 32/64 bit
  19. For Linux 32/64 bit, Unix 32/64 bit
  20. For Linux 32/64 bit, Unix 32/64 bit, Mac OS, Windows 32/64 bit
  21. For Linux 32/64 bit, SGI IRIX, Sun Solaris, DEC Alpha, DEC OSF/1
  22. For Linux 32/64 bit, Unix 32/64 bit, Mac OS, Windows 32/64 bit
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Books



Misc


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