Processed alignment with 13 sequences and 1947 sites.

Processor time taken: 428 seconds.

Results

GARD found evidence of 2 breakpoints

BPs | c-AIC | Δ c-AIC | Segments
--- | --- | --- | ---
0 | 19996.79256709643 |  |
1-1947
1 | 19908.39547163544 | 88.39709546099039 |
549 |
2 | 19821.83383007637 | 86.56164155907027 |
270 | 549 |
3 | 19821.83383007637 | 0 |
270 | 549 |

Substitution process parameters

Nucleotide Model (010010) Fit Results

Log likelihood : -9966.878267882417
c-AIC : 19996.79256709643

Using general discrete distribution of rates across sites
Rate : 0.115Weight : 0.568
Rate : 1.957Weight : 0.414
Rate : 6.857Weight : 0.018

Nucleotide substitution rate matrix

| A | C | G | T
--- | --- | --- | --- | ---
A | * | 0.3223418444454191 | 1 | 0.3223418444454191
C | - | * | 0.3223418444454191 | 1
G | - | - | * | 0.3223418444454191
T | - | - | - | *

KH-test

Breakpoint | LHS Raw p | LHS adjusted p | RHS Raw p | RHS adjusted p
--- | --- | --- | --- | ---
270 | 0.04580 | 0.18320 | 0.00870 | 0.03480
549 | 0.00010 | 0.00040 | 0.04720 | 0.18880

At p = 0.01 there are 0 significant breakpoints

At p = 0.05 there are 0 significant breakpoints

At p = 0.1 there are 0 significant breakpoints

Mean splits identify: 0.2962962962962963

Final breakpoints
(regardless of the KH-test (user defined) and adjusted to keep in-frame alignment, if necessary)

- 270
- 549

ATTENTION: as defined by the user break points are also used for further calculations even if the KH test showed no significant topological incongruence!