### Mx1 in bats

#### full alignment

Go back to Positive Selection Results

Switch CodeML results

- CodeML fragment_1
- CodeML fragment_2
- CodeML fragment_3

# Results of CodeML analyses for the full alignment

## CodeML parameter and result files

| M0 | M1a | M2a | M7 | M8 | M8a
--- | --- | --- | --- | --- | --- | ---
F3X4 | results | params | results | params | results | params | results | params | results | params | results | params
F1X4 | results | params | results | params | results | params | results | params | results | params | results | params
F61 | results | params | results | params | results | params | results | params | results | params | results | params

## Likelihood ratio tests between nested models

Green = LRT was significant at significance level 0.1

Red = LRT was not significant.

| M1a-M2a | M7-M8 | M8a-M8
--- | --- | --- | ---
F61 | lnL_M1a = -9832.25 lnL_M2a = -9800.79 LRT: χ2 = 62.91 % sites with ω > 1 = 5.7 avg(ω) = 3.26 p < 0.001 | lnL_M7 = -9840.32 lnL_M8 = -9798.89 LRT: χ2 = 82.85 % sites with ω > 1 = 8.06 avg(ω) = 2.75 p < 0.001 | lnL_M8a = -9830.88 lnL_M8 = -9798.89 LRT: χ2 = 63.98 % sites with ω > 1 = 8.06 avg(ω) = 2.75 p < 0.001
F1X4 | lnL_M1a = -9805.43 lnL_M2a = -9776.37 LRT: χ2 = 58.12 % sites with ω > 1 = 4.66 avg(ω) = 3.45 p < 0.001 | lnL_M7 = -9810.71 lnL_M8 = -9772.54 LRT: χ2 = 76.34 % sites with ω > 1 = 7.05 avg(ω) = 2.79 p < 0.001 | lnL_M8a = -9801.87 lnL_M8 = -9772.54 LRT: χ2 = 58.65 % sites with ω > 1 = 7.05 avg(ω) = 2.79 p < 0.001
F3X4 | lnL_M1a = -9734.09 lnL_M2a = -9693.18 LRT: χ2 = 81.82 % sites with ω > 1 = 4.74 avg(ω) = 4.23 p < 0.001 | lnL_M7 = -9738.25 lnL_M8 = -9687.55 LRT: χ2 = 101.39 % sites with ω > 1 = 6.26 avg(ω) = 3.45 p < 0.001 | lnL_M8a = -9727.16 lnL_M8 = -9687.55 LRT: χ2 = 79.21 % sites with ω > 1 = 6.26 avg(ω) = 3.45 p < 0.001