“The double helix is indeed a remarkable molecule. Modern man is perhaps 50,000 years old, civilization has existed for scarcely 10,000 years and the United States for only just over 200 years; but DNA and RNA have been around for at least several billion years. All that time the double helix has been there, and active, and yet we are the first creatures on Earth to become aware of its existence.” 

Francis Crick (1916–2004)


 

E-Mail: kevin.lamkiewicz@uni-jena.de
Room: 08S06
Phone: +49-3641-9-46484

CV: Click here


Publications

2022

Sofer, Summer; Lamkiewicz, Kevin; Eilat, Shir Armoza; Partouche, Shirly; Marz, Manja; Moskovits, Neta; Stemmer, Salomon M; Shlomai, Amir; Sklan, Ella H

A genome-wide CRISPR activation screen reveals Hexokinase 1 as a critical factor in promoting resistance to multi-kinase inhibitors in hepatocellular carcinoma cells Journal Article

In: FASEB J , vol. 36, iss. 3, pp. e22191, 2022.

Abstract | Links | BibTeX

Fuchs, Jonas; Lamkiewicz, Kevin; Kolesnikova, Larissa; Hölzer, Martin; Marz, Manja; Kochs, Georg

Comparative study of ten thogotovirus isolates and their distinct in vivo characteristics Journal Article

In: J Virol, 2022.

Abstract | Links | BibTeX

2021

Pappas, Nikolaos; Roux, Simon; Hölzer, Martin; Lamkiewicz, Kevin; Mock, Florian; Marz, Manja; Dutilh, Bas E.

Virus Bioinformatics Incollection

In: Reference Module in Life Sciences, vol. 1, pp. 124-132, Elsevier, 2021, ISBN: 978-0-12-809633-8.

Abstract | Links | BibTeX

2020

Hufsky, Franziska; Beerenwinkel, Niko; Meyer, Irmtraud M.; Roux, Simon; Cook, Georgia May; Kinsella, Cormac M.; Lamkiewicz, Kevin; Marquet, Mike; Nieuwenhuijse, David F.; Olendraite, Ingrida; Paraskevopoulou, Sofia; Young, Francesca; Dijkman, Ronald; Ibrahim, Bashar; Kelly, Jenna; Mercier, Philippe Le; Marz, Manja; Ramette, Alban; Thiel, Volker

The International Virus Bioinformatics Meeting 2020 Journal Article

In: Viruses, vol. 12, no. 12, pp. 1398, 2020.

Abstract | Links | BibTeX

Kalvari, Ioanna; Nawrocki, Eric P; Ontiveros-Palacios, Nancy; Argasinska, Joanna; Lamkiewicz, Kevin; Marz, Manja; Griffiths-Jones, Sam; Toffano-Nioche, Claire; Gautheret, Daniel; Weinberg, Zasha; Rivas, Elena; Eddy, Sean R; Finn, Robert D; Bateman, Alex; Petrov, Anton I

Rfam 14: expanded coverage of metagenomic, viral and microRNA families Journal Article

In: Nucleic Acids Res, vol. 49, no. D1, pp. D192–D200, 2020.

Abstract | Links | BibTeX

Hufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne-Christin; Heider, Dominik; Hoffmann, Marie; Hölzer, Martin; Hoops, Stefan; Kaderali, Lars; Kalvari, Ioanna; Kleist, Max; Kmiecinski, Renó; Kühnert, Denise; Lasso, Gorka; Libin, Pieter; List, Markus; Löchel, Hannah F; Martin, Maria J; Martin, Roman; Matschinske, Julian; McHardy, Alice C; Mendes, Pedro; Mistry, Jaina; Navratil, Vincent; Nawrocki, Eric P; O'Toole, Áine Niamh; Ontiveros-Palacios, Nancy; Petrov, Anton I; Rangel-Pineros, Guillermo; Redaschi, Nicole; Reimering, Susanne; Reinert, Knut; Reyes, Alejandro; Richardson, Lorna; Robertson, David L; Sadegh, Sepideh; Singer, Joshua B; Theys, Kristof; Upton, Chris; Welzel, Marius; Williams, Lowri; Marz, Manja

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research Journal Article

In: Brief Bioinform, vol. 22, no. 2, pp. 642–663, 2020.

Abstract | Links | BibTeX

Jordan-Paiz, Ana; Nevot, Maria; Lamkiewicz, Kevin; Lataretu, Marie; Franco, Sandra; Marz, Manja; Martinez, Miguel Angel

HIV-1 lethality and loss of Env protein expression induced by single synonymous substitutions in the virus genome intronic splicing silencer Journal Article

In: J Virol, vol. 94, no. 21, 2020.

Abstract | Links | BibTeX

Hufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D.; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne-Christin; Heider, Dominik; Hoffmann, Marie; Hölzer, Martin; Hoops, Stefan; Kaderali, Lars; Kalvari, Ioanna; Kleist, Max; Kmiecinski, Rene; Kühnert, Denise; Lasso, Gorka; Libin, Pieter; List, Markus; Löchel, Hannah F.; Martin, Maria J.; Martin, Roman; Matschinske, Julian; McHardy, Alice C.; Mendes, Pedro; Mistry, Jaina; Navratil, Vincent; Nawrocki, Eric; O'Toole, Áine Niamh; Palacios-Ontiveros, Nancy; Petrov, Anton I.; Rangel-Piñeros, Guillermo; Redaschi, Nicole; Reimering, Susanne; Reinert, Knut; Reyes, Alejandro; Richardson, Lorna; Robertson, David L.; Sadegh, Sepideh; Singer, Joshua B.; Theys, Kristof; Upton, Chris; Welzel, Marius; Williams, Lowri; Marz, Manja

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research Journal Article

In: Preprints, 2020, (Now published in Brief Bioinform: https://dx.doi.org/10.1093/bib/bbaa232).

Abstract | Links | BibTeX

Hölzer, Martin; Barf, Lisa-Marie; Lamkiewicz, Kevin; Vorimore, Fabien; Lataretu, Marie; Favaroni, Alison; Schnee, Christiane; Laroucau, Karine; Marz, Manja; Sachse, Konrad

Comparative Genome Analysis of 33 Chlamydia Strains Reveals Characteristic Features of Chlamydia Psittaci and Closely Related Species Journal Article

In: Pathogens, vol. 9, no. 11, pp. 899, 2020.

Abstract | Links | BibTeX

2019

Mostajo, Nelly F.; Lataretu, Marie; Krautwurst, Sebastian; Mock, Florian; Desirò, Daniel; Lamkiewicz, Kevin; Collatz, Maximilian; Schoen, Andreas; Weber, Friedemann; Marz, Manja; Hölzer, Martin

A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes Journal Article

In: NAR Genomics Bioinf, vol. 2, no. 1, pp. lqz006, 2019.

Abstract | Links | BibTeX

Viehweger, Adrian; Krautwurst, Sebastian; Lamkiewicz, Kevin; Madhugiri, Ramakanth; Ziebuhr, John; Hölzer, Martin; Marz, Manja

Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis. Journal Article

In: Genome Res, vol. 29, pp. 1545-1554, 2019.

Abstract | Links | BibTeX

Dukhovny, Anna; Lamkiewicz, Kevin; Chen, Qian; Fricke, Markus; Jabrane-Ferrat, Nabila; Marz, Manja; Jung, Jae U.; Sklan, Ella H.

A CRISPR activation screen identifies genes protecting from Zika virus infection Journal Article

In: J Virol, vol. 93, no. 16, 2019.

Abstract | Links | BibTeX

Peter, Stephan; Hölzer, Martin; Lamkiewicz, Kevin; Fenizio, Pietro Speroni; Hwaeer, Hassan Al; Marz, Manja; Schuster, Stefan; Dittrich, Peter; Ibrahim, Bashar

Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis Journal Article

In: Viruses, vol. 11, no. 5, pp. 449, 2019.

Abstract | Links | BibTeX

Hufsky, Franziska; Ibrahim, Bashar; Modha, Sejal; Clokie, Martha R. J.; Deinhardt-Emmer, Stefanie; Dutilh, Bas E.; Lycett, Samantha; Simmonds, Peter; Thiel, Volker; Abroi, Aare; Adriaenssens, Evelien M.; Escalera-Zamudio, Marina; Kelly, Jenna Nicole; Lamkiewicz, Kevin; Lu, Lu; Susat, Julian; Sicheritz, Thomas; Robertson, David L.; Marz, Manja

The Third Annual Meeting of the European Virus Bioinformatics Center Journal Article

In: Viruses, vol. 11, no. 5, pp. 420, 2019.

Abstract | Links | BibTeX

2018

Lamkiewicz, Kevin; Barth, Emanuel; Marz, Manja; Ibrahim, Bashar

Identification of potential microRNAs associated with Herpesvirus family based on bioinformatic analysis Journal Article

In: bioRxiv, pp. 417782, 2018.

Abstract | Links | BibTeX

2017

Madhugiri, Ramakanth; Karl, Nadja; Petersen, Daniel; Lamkiewicz, Kevin; Fricke, Markus; Wend, Ulrike; Scheuer, Robina; Marz, Manja; Ziebuhr, John

Structural and functional conservation of cis-acting RNA elements in coronavirus 5'-terminal genome regions Journal Article

In: Virology, vol. 517, pp. 44–55, 2017.

Abstract | Links | BibTeX


Conferences

  • 2020 — 4th International Virus Bioinformatics Meeting in Bern, Switzerland
  • 2020 — 35th TBI Winterseminar in Bled, Slovenia
  • 2019 — 17th Herbstseminar der Bioinformatik in Doubice, Czech Republic
  • 2019 — 3rd Annual Meeting of the European Virus Bioinformatics Center in Glasgow, Scotland
  • 2019 — 28th Annual Meeting of the Society for Virology in Düsseldorf, Germany
  • 2019 — 34th TBI Winterseminar in Bled, Slovenia
  • 2018 — 16th Herbstseminar der Bioinformatik in Doubice, Czech Republic
  • 2018 — German Conference on Bioinformatics 2018 in Vienna, Austria
  • 2018 — Mittelerde-Meeting – 3rd Central German Meeting on Bioinformatics in Mittweida, Germany
  • 2018 — 2nd Annual Meeting of the European Virus Bioinformatics Center in Utrecht, Netherlands
  • 2018 — 28th Annual Meeting of the Society for Virology in Würzburg, Germany
  • 2018 — 33rd TBI Winterseminar in Bled, Slovenia
  • 2017 — 15th Herbstseminar der Bioinformatik in Doubice, Czech
  • 2017 — German Conference on Bioinformatics 2017 in Tübingen, Germany
  • 2017 — Mittelerde-Meeting – 2nd Central German Meeting on Bioinformatics in Leipzig, Germany
  • 2017 — HACKEN – Stay Young or Die Trying!, Hackathon in Jena, Germany
  • 2017 — 1st Annual Meeting of the European Virus Bioinformatics Center in Jena, Germany
  • 2017 — 27th Annual Meeting of the Society for Virology in Marburg, Germany
  • 2017 — 32nd TBI Winterseminar in Bled, Slovenia
  • 2016 — International Symposium on Bioinformatics Research and Applications in Minsk, Belarus
  • 2015 — Recomb-CG in Frankfurt, Germany