Sebastian Krautwurst

E-Mail: sebastian.krautwurst@uni-jena.de
Room: 08S01
Phone: +49-3641-9-46483

Publications

2023

Meyer, Daria; Goettsch, Winfried; Spangenberg, Jannes; Bohn, Patrick; Stieber, Bettina; Krautwurst, Sebastian; zu Siederdissen, Christian Höner; Srivastava, Akash; Zarkovic, Milena; Wollny, Damian; Marz, Manja

Maximizing the potential of genomic and transcriptomic studies by nanopore sequencing Journal Article

In: bioRxiv, 2023.

Abstract | Links | BibTeX

Santos, José Diogo Neves Dos; Vitorino, Inês Rosado; Kallscheuer, Nicolai; Srivastava, Akash; Krautwurst, Sebastian; Marz, Manja; Jogler, Christian; Lobo-da-Cunha, Alexandre; Catita, José; Gonçalves, Hugo; González, Ignacio; Reyes, Fernando; Lage, Olga Maria

Streptomyces marispadix sp. nov., isolated from marine beach sediment Journal Article

In: International Journal of Systematic and Evolutionary Microbiology, vol. 73, no. 7, 2023, ISBN: 1466-5034.

Abstract | Links | BibTeX

Erkes, Annett; Grove, René P; Žarković, Milena; Krautwurst, Sebastian; Koebnik, Ralf; Morgan, Richard D; Wilson, Geoffrey G; Hölzer, Martin; Marz, Manja; Boch, Jens; Grau, Jan

Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing Journal Article

In: BMC Genomics, vol. 24, iss. 1, pp. 151, 2023.

Abstract | Links | BibTeX

2022

Fuesslin, Valeria; Krautwurst, Sebastian; Srivastava, Akash; Winter, Doris; Liedigk, Britta; Thye, Thorsten; Herrera-León, Silvia; Wohl, Shirlee; May, Jürgen; Fobil, Julius N.; Eibach, Daniel; Marz, Manja; Schuldt, Kathrin

Prediction of Antibiotic Susceptibility Profiles of Vibrio cholerae Isolates From Whole Genome Illumina and Nanopore Sequencing Data: CholerAegon Journal Article

In: Front Microbiol, vol. 13, pp. 909692, 2022.

Abstract | Links | BibTeX

2021

Brandt, Christian; Krautwurst, Sebastian; Spott, Riccardo; Lohde, Mara; Jundzill, Mateusz; Marquet, Mike; Hölzer, Martin

poreCov - An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing Journal Article

In: Front Genet, vol. 12, pp. 711437, 2021.

Abstract | Links | BibTeX

Brandt, Christian; Krautwurst, Sebastian; Spott, Riccardo; Lohde, Mara; Jundzill, Mateusz; Marquet, Mike; Hölzer, Martin

poreCov - an easy to use, fast, and robust workflow for SARS-CoV-2 genome reconstruction via nanopore sequencing Journal Article

In: bioRxiv, 2021, (Now published in Frontiers in Genetics: https://dx.doi.org/10.3389/fgene.2021.711437).

Abstract | Links | BibTeX

Krautwurst, Sebastian; Dijkman, Ronald; Thiel, Volker; Krumbholz, Andi; Marz, Manja

Direct RNA Sequencing for Complete Viral Genomes Book Section

In: Frishman, Dmitrij; Marz, Manja (Ed.): Virus Bioinformatics, CRC Press, 2021.

Abstract | Links | BibTeX

2019

Mostajo, Nelly F.; Lataretu, Marie; Krautwurst, Sebastian; Mock, Florian; Desirò, Daniel; Lamkiewicz, Kevin; Collatz, Maximilian; Schoen, Andreas; Weber, Friedemann; Marz, Manja; Hölzer, Martin

A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes Journal Article

In: NAR Genomics Bioinf, vol. 2, no. 1, pp. lqz006, 2019.

Abstract | Links | BibTeX

Viehweger, Adrian; Krautwurst, Sebastian; Lamkiewicz, Kevin; Madhugiri, Ramakanth; Ziebuhr, John; Hölzer, Martin; Marz, Manja

Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis. Journal Article

In: Genome Res, vol. 29, pp. 1545-1554, 2019.

Abstract | Links | BibTeX

Viehweger, Adrian; Krautwurst, Sebastian; Koenig, Brigitte; Marz, Manja

An encoding of genome content for machine learning Journal Article

In: bioRxiv, pp. 524280, 2019.

Abstract | Links | BibTeX