Systematic analysis and evolution of 5S ribosomal DNA in metazoans

(Joaquín Vierna, Stefanie Wehner, Christian Höner zu Siederdissen, Andrés Martínez-Lage and Manja Marz)

Organism	Assembly	Coverage	real genomesize (Mbp)	Mbp expected	Download date	Download
Homo sapiens	f		3096	3423	26.11.10	Download link
Pongo pygmaeus	f	6X	3447	3703	28.01.10	Download link
Macaca mulata	f	5.1X	3097	3291	28.01.10	Download link
Callithrix jacchus Marmoset	c	6X	2927	3355	28.01.10	Download link
Tarsius syrichta	s	1.82X	3187	5144	28.01.10	Download link
Otolemur garnettii	s	1.5X	3429	3531	28.01.10	Download link
Mus musculus	f		2717	3216	26.11.10	Download link
Rattus norvegicus	f		2719	3286	26.11.10	Download link
Dipodomys ordii	s	1.85X	2165	4377	28.01.10	Download link
Spermophilus tridecemlineatus	s	1.90X	3499	3932	28.01.10	Download link
Cavia porcellus	s	2X	2723	3751	28.01.10	Download link
Ochotona princeps	s	1.93X	4782	3107	28.01.10	Download link
Oryctolagus cuniculus	s	7.48	3474	3107	28.01.10	Download link
Tupaia belangeri	s	2X	3670	3472	28.01.10	Download link
Felis catus	s	1.87X	4056	3040	28.01.10	Download link
Canis familiaris	f	7.6X	2532	3051	28.01.10	Download link
Vicugna pacos	s	2.51X	2968	3169	28.01.10	Download link
Tursiops truncatus	s	2.59X	2522	3081	28.01.10	Download link
Bos taurus	f	9.5X	2918	3537	28.01.10	Download link
Sus scrofa	f	4X	2263	3059	28.01.10	Download link
Equus caballus	f	6.8X	2475	3149	28.01.10	Download link
Myotis lucifugus	s	7X	2859	2248	28.01.10	Download link
Pteropus vampyrus	s	2.63X	2000	2318	28.01.10	Download link
Erinaceus europaeus	s	1.86X	3378	3579	28.01.10	Download link
Sorex araneus	s	1.9X	2944	2846	28.01.10	Download link
Loxodonta africana	s	7X	4181	4181	28.01.10	Download link
Echinops telfairi	s	2X	3834	4919	28.01.10	Download link
Procavia capensis	s	2.19X	2993	3971	28.01.10	Download link
Dasypus novemcinctus	s	2X	4824	5291	28.01.10	Download link
Choloepus hoffmanni	s	2.05X	2467	4137	28.01.10	Download link
Monodelphis domestica	f	6.8X	3606	4592	28.01.10	Download link
Macropus eugenii	s	2X	2956	4224	28.01.10	Download link
Ornithorhynchus anatinus	f	1.84	2073	2993	26.11.10	Download link
Taeniopygia guttata	f	6X	1233	1222	28.01.10	Download link
Gallus gallus	f	6.6X	1100	1222	28.01.10	Download link
Xenopus tropicalis	s	7.65X	1511	3978	28.01.10	Download link
Tetraodon nigroviridis	f	6X	359	421	28.01.10	Download link
Takifugu rubripes	s	8.5X	393	391	28.01.10	Download link
Gasterostreus aculeatus	s	6X	61	626	28.01.10	Download link
Oryzias latipes	f	10.6X	869	1010	28.01.10	Download link
Danio rerio	f	~30X	1481	1817	28.01.10	Download link
Callorhinchus mili	c	1.4X	769	1897	28.01.10	Download link
Petromyzon marinus	c	5.9X	1027	2020	28.01.10	Download link
Branchiostoma floridae	s	8.1X	522	577	28.01.10	Download link
Ciona intestinalis	f	11X	173	196	28.01.10	Download link
Ciona savignyi	c	12X	177	196	28.01.10	Download link
Oikopleura dioica	s	10X	70	68	28.01.10	Download link
Saccoglossus kowalevskii	s	7X	776	800	27.03.10	Download link
Drosophila melanogaster	f		169	168	27.03.10	Download link
Drosophila simulans	s	9.5X	138	142	27.03.10	Download link
Drosophila sechellia	s		167	166	27.03.10	Download link
Drosophila erecta	f		153	147	27.03.10	Download link
Drosophila yakuba	s		166	170	27.03.10	Download link
Drosophila ananassae	s		231	199	27.03.10	Download link
Drosophila pseudoobscura	s		153	168	27.03.10	Download link
Drosophila persimilis	s		188	192	27.03.10	Download link
Drosophila willistoni	s		236	220	27.03.10	Download link
Drosophila virilis	s		206	362	27.03.10	Download link
Drosophila mojavensis	s		194	179	27.03.10	Download link
Drosophila grimshawi	s		200	240	27.03.10	Download link
Anopheles gambiae	s	10X	236	264	31.01.10	Download link
Aedes aegypti	c	8X	1384	942	31.01.10	Download link
Bombyx mori	s	6X	481	513	27.03.10	Download link
Tribolium castaneum	c	7X	200	202	27.03.10	Download link
Apis mellifera	s	7.5X	235	229	11.11.10	Download link
Nasonia vitripennis	f	7X	357	333	27.03.10	Download link
Pediculus humanus	c	8.5X	111	108	31.01.10	Download link
Acyrthosiphon pisum	s	6.2X	464	303	27.03.10	Download link
Daphnia pulex	s	8.7X	197	289	27.03.10	Download link
Ixodes scapularis	s	4X	1765	2357	31.01.10	Download link
Caenorhabditis remanei	c	9.2X	145	101	11.11.10	Download link
Caenorhabditis briggsae	f	10X	108	117	11.11.10	Download link
Caenorhabditis brenneri	c	9.5X	190	101	11.11.10	Download link
Caenorhabditis elegans	f		100	93	11.11.10	Download link
Caenorhabditis japonica	c	6.3X	163	101	11.11.10	Download link
Haemonchus contortus	c	2-3X	298	59	11.11.10	Download link
Ancylostoma canium	c	10X	75	166	31.01.10	Download link
Pristionchus pacificus	c	8.92X	170	166	11.11.10	Download link
Strongyloides ratti	c		396	225	11.11.10	Download link
Meloidogyne incognita	c		82	49	11.11.10	Download link
Meloidogyne hapla	c	10.4X	53	44	11.11.10	Download link
Brugia malayi	c	11X	96	108	11.11.10	Download link
Trichinella spiralis	c	~35X	3061	254	31.02.10	Download link
Echinococcus multilocularis			10	440	11.11.10	Download link
Schistosoma mansoni	s	3X	381	254	27.03.10	Download link
Schistosoma japonicum	c		369	254	11.11.10	Download link
Schmidtea mediterranea	c	11.6X	902	704	27.05.10	Download link
Helobdella robusta	c		3090	303	31.02.10	Download link
Capitella sp	c	~7.9X	3592	235	02.02.10	Download link
Alvinella pompejana	c		290	729	31.01.10	Download link
Lottia gigantea	s	8.87X	360	421	11.11.10	Download link
Aplysia californica	s	9.86X	716	1858	31.01.10	Download link
Biomphalaria glabrata	c	23X	202	929	31.01.10	Download link
Euprymna scolopes	c		47	3668	11.11.10	Download link
Acropora palmata	c		9	225	31.01.10	Download link
Acropora millepora	c	5X	11	225	31.01.10	Download link
Porites lobata			10	1114	11.11.10	Download link
Nematostella vectensis	s	7.8X	357	225	27.03.10	Download link
Reniera spez	c	~9X	2882	359	11.11.10	Download link
Trichoplax adhaerens	s	8X	106	39	27.03.10	Download link

GFF, FA, STK Alignment files and Constraints for RNAfold

	5S rRNA				U1 snRNA
Organism	GFF	FA	STK	Constraints	GFF	FA	STK	Constraints
Homo sapiens	hsa.5S.gff	hsa.5S.fa	hsa.5S.stk	hsa.5S.constraints	hsa.U1.gff	hsa.U1.fa	hsa.U1.stk	hsa.U1.constraints
Pongo pygmaeus	ppy.5S.gff	ppy.5S.fa	ppy.5S.stk	ppy.5S.constraints	ppy.U1.gff	ppy.U1.fa	ppy.U1.stk	ppy.U1.constraints
Macaca mulata	mac.5S.gff	mac.5S.fa	mac.5S.stk	mac.5S.constraints	mac.U1.gff	mac.U1.fa	mac.U1.stk	mac.U1.constraints
Callithrix jacchus Marmoset	cjc.5S.gff	cjc.5S.fa	cjc.5S.stk	cjc.5S.constraints	cjc.U1.gff	cjc.U1.fa	cjc.U1.stk	cjc.U1.constraints
Tarsius syrichta	tsy.5S.gff	tsy.5S.fa	tsy.5S.stk	tsy.5S.constraints	tsy.U1.gff	tsy.U1.fa	tsy.U1.stk	tsy.U1.constraints
Otolemur garnettii	oga.5S.gff	oga.5S.fa	oga.5S.stk	oga.5S.constraints	oga.U1.gff	oga.U1.fa	oga.U1.stk	oga.U1.constraints
Mus musculus	mmu.5S.gff	mmu.5S.fa	mmu.5S.stk	mmu.5S.constraints	mmu.U1.gff	mmu.U1.fa	mmu.U1.stk	mmu.U1.constraints
Rattus norvegicus	rno.5S.gff	rno.5S.fa	rno.5S.stk	rno.5S.constraints	rno.U1.gff	rno.U1.fa	rno.U1.stk	rno.U1.constraints
Dipodomys ordii	dor.5S.gff	dor.5S.fa	dor.5S.stk	dor.5S.constraints	dor.U1.gff	dor.U1.fa	dor.U1.stk	dor.U1.constraints
Spermophilus tridecemlineatus	str.5S.gff	str.5S.fa	str.5S.stk	str.5S.constraints	str.U1.gff	str.U1.fa	str.U1.stk	str.U1.constraints
Cavia porcellus	cpo.5S.gff	cpo.5S.fa	cpo.5S.stk	cpo.5S.constraints	cpo.U1.gff	cpo.U1.fa	cpo.U1.stk	cpo.U1.constraints
Ochotona princeps	opr.5S.gff	opr.5S.fa	opr.5S.stk	opr.5S.constraints	opr.U1.gff	opr.U1.fa	opr.U1.stk	opr.U1.constraints
Oryctolagus cuniculus	ocu.5S.gff	ocu.5S.fa	ocu.5S.stk	ocu.5S.constraints	ocu.U1.gff	ocu.U1.fa	ocu.U1.stk	ocu.U1.constraints
Tupaia belangeri	tbe.5S.gff	tbe.5S.fa	tbe.5S.stk	tbe.5S.constraints	tbe.U1.gff	tbe.U1.fa	tbe.U1.stk	tbe.U1.constraints
Felis catus	fca.5S.gff	fca.5S.fa	fca.5S.stk	fca.5S.constraints	fca.U1.gff	fca.U1.fa	fca.U1.stk	fca.U1.constraints
Canis familiaris	cfa.5S.gff	cfa.5S.fa	cfa.5S.stk	cfa.5S.constraints	cfa.U1.gff	cfa.U1.fa	cfa.U1.stk	cfa.U1.constraints
Vicugna pacos	vpa.5S.gff	vpa.5S.fa	vpa.5S.stk	vpa.5S.constraints	vpa.U1.gff	vpa.U1.fa	vpa.U1.stk	vpa.U1.constraints
Tursiops truncatus	ttr.5S.gff	ttr.5S.fa	ttr.5S.stk	ttr.5S.constraints	ttr.U1.gff	ttr.U1.fa	ttr.U1.stk	ttr.U1.constraints
Bos taurus	bta.5S.gff	bta.5S.fa	bta.5S.stk	bta.5S.constraints	bta.U1.gff	bta.U1.fa	bta.U1.stk	bta.U1.constraints
Sus scrofa	ssc.5S.gff	ssc.5S.fa	ssc.5S.stk	ssc.5S.constraints	ssc.U1.gff	ssc.U1.fa	ssc.U1.stk	ssc.U1.constraints
Equus caballus	eca.5S.gff	eca.5S.fa	eca.5S.stk	eca.5S.constraints	eca.U1.gff	eca.U1.fa	eca.U1.stk	eca.U1.constraints
Myotis lucifugus	mlu.5S.gff	mlu.5S.fa	mlu.5S.stk	mlu.5S.constraints	mlu.U1.gff	mlu.U1.fa	mlu.U1.stk	mlu.U1.constraints
Pteropus vampyrus	pva.5S.gff	pva.5S.fa	pva.5S.stk	pva.5S.constraints	pva.U1.gff	pva.U1.fa	pva.U1.stk	pva.U1.constraints
Erinaceus europaeus	eeu.5S.gff	eeu.5S.fa	eeu.5S.stk	eeu.5S.constraints	eeu.U1.gff	eeu.U1.fa	eeu.U1.stk	eeu.U1.constraints
Sorex araneus	sar.5S.gff	sar.5S.fa	sar.5S.stk	sar.5S.constraints	sar.U1.gff	sar.U1.fa	sar.U1.stk	sar.U1.constraints
Loxodonta africana	laf.5S.gff	laf.5S.fa	laf.5S.stk	laf.5S.constraints	laf.U1.gff	laf.U1.fa	laf.U1.stk	laf.U1.constraints
Echinops telfairi	ete.5S.gff	ete.5S.fa	ete.5S.stk	ete.5S.constraints	ete.U1.gff	ete.U1.fa	ete.U1.stk	ete.U1.constraints
Procavia capensis	pca.5S.gff	pca.5S.fa	pca.5S.stk	pca.5S.constraints	pca.U1.gff	pca.U1.fa	pca.U1.stk	pca.U1.constraints
Dasypus novemcinctus	dno.5S.gff	dno.5S.fa	dno.5S.stk	dno.5S.constraints	dno.U1.gff	dno.U1.fa	dno.U1.stk	dno.U1.constraints
Choloepus hoffmanni	cho.5S.gff	cho.5S.fa	cho.5S.stk	cho.5S.constraints	cho.U1.gff	cho.U1.fa	cho.U1.stk	cho.U1.constraints
Monodelphis domestica	mdo.5S.gff	mdo.5S.fa	mdo.5S.stk	mdo.5S.constraints	mdo.U1.gff	mdo.U1.fa	mdo.U1.stk	mdo.U1.constraints
Macropus eugenii	meu.5S.gff	meu.5S.fa	meu.5S.stk	meu.5S.constraints	meu.U1.gff	meu.U1.fa	meu.U1.stk	meu.U1.constraints
Ornithorhynchus anatinus	oan.5S.gff	oan.5S.fa	oan.5S.stk	oan.5S.constraints	oan.U1.gff	oan.U1.fa	oan.U1.stk	oan.U1.constraints
Taeniopygia guttata	tgu.5S.gff	tgu.5S.fa	tgu.5S.stk	tgu.5S.constraints	tgu.U1.gff	tgu.U1.fa	tgu.U1.stk	tgu.U1.constraints
Gallus gallus	gga.5S.gff	gga.5S.fa	gga.5S.stk	gga.5S.constraints	gga.U1.gff	gga.U1.fa	gga.U1.stk	gga.U1.constraints
Xenopus tropicalis	xtr.5S.gff	xtr.5S.fa	xtr.5S.stk	xtr.5S.constraints	xtr.U1.gff	xtr.U1.fa	xtr.U1.stk	xtr.U1.constraints
Tetraodon nigroviridis	tni.5S.gff	tni.5S.fa	tni.5S.stk	tni.5S.constraints	tni.U1.gff	tni.U1.fa	tni.U1.stk	tni.U1.constraints
Takifugu rubripes	tru.5S.gff	tru.5S.fa	tru.5S.stk	tru.5S.constraints	tru.U1.gff	tru.U1.fa	tru.U1.stk	tru.U1.constraints
Gasterostreus aculeatus	gac.5S.gff	gac.5S.fa	gac.5S.stk	gac.5S.constraints	gac.U1.gff	gac.U1.fa	gac.U1.stk	gac.U1.constraints
Oryzias latipes	ola.5S.gff	ola.5S.fa	ola.5S.stk	ola.5S.constraints	ola.U1.gff	ola.U1.fa	ola.U1.stk	ola.U1.constraints
Danio rerio	dre.5S.gff	dre.5S.fa	dre.5S.stk	dre.5S.constraints	dre.U1.gff	dre.U1.fa	dre.U1.stk	dre.U1.constraints
Callorhinchus mili	cmi.5S.gff	cmi.5S.fa	cmi.5S.stk	cmi.5S.constraints	cmi.U1.gff	cmi.U1.fa	cmi.U1.stk	cmi.U1.constraints
Petromyzon marinus	pma.5S.gff	pma.5S.fa	pma.5S.stk	pma.5S.constraints	pma.U1.gff	pma.U1.fa	pma.U1.stk	pma.U1.constraints
Branchiostoma floridae	bfl.5S.gff	bfl.5S.fa	bfl.5S.stk	bfl.5S.constraints	bfl.U1.gff	bfl.U1.fa	bfl.U1.stk	bfl.U1.constraints
Ciona intestinalis	cin.5S.gff	cin.5S.fa	cin.5S.stk	cin.5S.constraints	cin.U1.gff	cin.U1.fa	cin.U1.stk	cin.U1.constraints
Ciona savignyi	csa.5S.gff	csa.5S.fa	csa.5S.stk	csa.5S.constraints	csa.U1.gff	csa.U1.fa	csa.U1.stk	csa.U1.constraints
Oikopleura dioica	odi.5S.gff	odi.5S.fa	odi.5S.stk	odi.5S.constraints	odi.U1.gff	odi.U1.fa	odi.U1.stk	odi.U1.constraints
Saccoglossus kowalevskii	sko.5S.gff	sko.5S.fa	sko.5S.stk	sko.5S.constraints	sko.U1.gff	sko.U1.fa	sko.U1.stk	sko.U1.constraints
Drosophila melanogaster	dme.5S.gff	dme.5S.fa	dme.5S.stk	dme.5S.constraints	dme.U1.gff	dme.U1.fa	dme.U1.stk	dme.U1.constraints
Drosophila simulans	dsi.5S.gff	dsi.5S.fa	dsi.5S.stk	dsi.5S.constraints	dsi.U1.gff	dsi.U1.fa	dsi.U1.stk	dsi.U1.constraints
Drosophila sechellia	dse.5S.gff	dse.5S.fa	dse.5S.stk	dse.5S.constraints	dse.U1.gff	dse.U1.fa	dse.U1.stk	dse.U1.constraints
Drosophila erecta	der.5S.gff	der.5S.fa	der.5S.stk	der.5S.constraints	der.U1.gff	der.U1.fa	der.U1.stk	der.U1.constraints
Drosophila yakuba	dya.5S.gff	dya.5S.fa	dya.5S.stk	dya.5S.constraints	dya.U1.gff	dya.U1.fa	dya.U1.stk	dya.U1.constraints
Drosophila ananassae	dan.5S.gff	dan.5S.fa	dan.5S.stk	dan.5S.constraints	dan.U1.gff	dan.U1.fa	dan.U1.stk	dan.U1.constraints
Drosophila pseudoobscura	dps.5S.gff	dps.5S.fa	dps.5S.stk	dps.5S.constraints	dps.U1.gff	dps.U1.fa	dps.U1.stk	dps.U1.constraints
Drosophila persimilis	dpe.5S.gff	dpe.5S.fa	dpe.5S.stk	dpe.5S.constraints	dpe.U1.gff	dpe.U1.fa	dpe.U1.stk	dpe.U1.constraints
Drosophila willistoni	dwi.5S.gff	dwi.5S.fa	dwi.5S.stk	dwi.5S.constraints	dwi.U1.gff	dwi.U1.fa	dwi.U1.stk	dwi.U1.constraints
Drosophila virilis	dvi.5S.gff	dvi.5S.fa	dvi.5S.stk	dvi.5S.constraints	dvi.U1.gff	dvi.U1.fa	dvi.U1.stk	dvi.U1.constraints
Drosophila mojavensis	dmo.5S.gff	dmo.5S.fa	dmo.5S.stk	dmo.5S.constraints	dmo.U1.gff	dmo.U1.fa	dmo.U1.stk	dmo.U1.constraints
Drosophila grimshawi	dgr.5S.gff	dgr.5S.fa	dgr.5S.stk	dgr.5S.constraints	dgr.U1.gff	dgr.U1.fa	dgr.U1.stk	dgr.U1.constraints
Anopheles gambiae	aga.5S.gff	aga.5S.fa	aga.5S.stk	aga.5S.constraints	aga.U1.gff	aga.U1.fa	aga.U1.stk	aga.U1.constraints
Aedes aegypti	aae.5S.gff	aae.5S.fa	aae.5S.stk	aae.5S.constraints	aae.U1.gff	aae.U1.fa	aae.U1.stk	aae.U1.constraints
Bombyx mori	bmo.5S.gff	bmo.5S.fa	bmo.5S.stk	bmo.5S.constraints	bmo.U1.gff	bmo.U1.fa	bmo.U1.stk	bmo.U1.constraints
Tribolium castaneum	tca.5S.gff	tca.5S.fa	tca.5S.stk	tca.5S.constraints	tca.U1.gff	tca.U1.fa	tca.U1.stk	tca.U1.constraints
Apis mellifera	ame.5S.gff	ame.5S.fa	ame.5S.stk	ame.5S.constraints	ame.U1.gff	ame.U1.fa	ame.U1.stk	ame.U1.constraints
Nasonia vitripennis	nvi.5S.gff	nvi.5S.fa	nvi.5S.stk	nvi.5S.constraints	nvi.U1.gff	nvi.U1.fa	nvi.U1.stk	nvi.U1.constraints
Pediculus humanus	phu.5S.gff	phu.5S.fa	phu.5S.stk	phu.5S.constraints	phu.U1.gff	phu.U1.fa	phu.U1.stk	phu.U1.constraints
Acyrthosiphon pisum	api.5S.gff	api.5S.fa	api.5S.stk	api.5S.constraints	api.U1.gff	api.U1.fa	api.U1.stk	api.U1.constraints
Daphnia pulex	dpu.5S.gff	dpu.5S.fa	dpu.5S.stk	dpu.5S.constraints	dpu.U1.gff	dpu.U1.fa	dpu.U1.stk	dpu.U1.constraints
Ixodes scapularis	isc.5S.gff	isc.5S.fa	isc.5S.stk	isc.5S.constraints	isc.U1.gff	isc.U1.fa	isc.U1.stk	isc.U1.constraints
Caenorhabditis remanei	cre.5S.gff	cre.5S.fa	cre.5S.stk	cre.5S.constraints	cre.U1.gff	cre.U1.fa	cre.U1.stk	cre.U1.constraints
Caenorhabditis briggsae	cbr.5S.gff	cbr.5S.fa	cbr.5S.stk	cbr.5S.constraints	cbr.U1.gff	cbr.U1.fa	cbr.U1.stk	cbr.U1.constraints
Caenorhabditis brenneri	cbe.5S.gff	cbe.5S.fa	cbe.5S.stk	cbe.5S.constraints	cbe.U1.gff	cbe.U1.fa	cbe.U1.stk	cbe.U1.constraints
Caenorhabditis elegans	cel.5S.gff	cel.5S.fa	cel.5S.stk	cel.5S.constraints	cel.U1.gff	cel.U1.fa	cel.U1.stk	cel.U1.constraints
Caenorhabditis japonica	cja.5S.gff	cja.5S.fa	cja.5S.stk	cja.5S.constraints	cja.U1.gff	cja.U1.fa	cja.U1.stk	cja.U1.constraints
Haemonchus contortus	hco.5S.gff	hco.5S.fa	hco.5S.stk	hco.5S.constraints	hco.U1.gff	hco.U1.fa	hco.U1.stk	hco.U1.constraints
Ancylostoma canium	acn.5S.gff	acn.5S.fa	acn.5S.stk	acn.5S.constraints	acn.U1.gff	acn.U1.fa	acn.U1.stk	acn.U1.constraints
Pristionchus pacificus	ppa.5S.gff	ppa.5S.fa	ppa.5S.stk	ppa.5S.constraints	ppa.U1.gff	ppa.U1.fa	ppa.U1.stk	ppa.U1.constraints
Meloidogyne incognita	min.5S.gff	min.5S.fa	min.5S.stk	min.5S.constraints	min.U1.gff	min.U1.fa	min.U1.stk	min.U1.constraints
Meloidogyne hapla	mha.5S.gff	mha.5S.fa	mha.5S.stk	mha.5S.constraints	mha.U1.gff	mha.U1.fa	mha.U1.stk	mha.U1.constraints
Brugia malayi	bma.5S.gff	bma.5S.fa	bma.5S.stk	bma.5S.constraints	bma.U1.gff	bma.U1.fa	bma.U1.stk	bma.U1.constraints
Trichinella spiralis	tsp.5S.gff	tsp.5S.fa	tsp.5S.stk	tsp.5S.constraints	tsp.U1.gff	tsp.U1.fa	tsp.U1.stk	tsp.U1.constraints
Schistosoma mansoni	sma.5S.gff	sma.5S.fa	sma.5S.stk	sma.5S.constraints	sma.U1.gff	sma.U1.fa	sma.U1.stk	sma.U1.constraints
Schistosoma japonicum	sja.5S.gff	sja.5S.fa	sja.5S.stk	sja.5S.constraints	sja.U1.gff	sja.U1.fa	sja.U1.stk	sja.U1.constraints
Schmidtea mediterranea	sme.5S.gff	sme.5S.fa	sme.5S.stk	sme.5S.constraints	sme.U1.gff	sme.U1.fa	sme.U1.stk	sme.U1.constraints
Helobdella robusta	hro.5S.gff	hro.5S.fa	hro.5S.stk	hro.5S.constraints	hro.U1.gff	hro.U1.fa	hro.U1.stk	hro.U1.constraints
Capitella sp	cca.5S.gff	cca.5S.fa	cca.5S.stk	cca.5S.constraints	cca.U1.gff	cca.U1.fa	cca.U1.stk	cca.U1.constraints
Alvinella pompejana	apo.5S.gff	apo.5S.fa	apo.5S.stk	apo.5S.constraints	apo.U1.gff	apo.U1.fa	apo.U1.stk	apo.U1.constraints
Lottia gigantea	lgi.5S.gff	lgi.5S.fa	lgi.5S.stk	lgi.5S.constraints	lgi.U1.gff	lgi.U1.fa	lgi.U1.stk	lgi.U1.constraints
Aplysia californica	aca.5S.gff	aca.5S.fa	aca.5S.stk	aca.5S.constraints	aca.U1.gff	aca.U1.fa	aca.U1.stk	aca.U1.constraints
Biomphalaria glabrata	bgl.5S.gff	bgl.5S.fa	bgl.5S.stk	bgl.5S.constraints	bgl.U1.gff	bgl.U1.fa	bgl.U1.stk	bgl.U1.constraints
Euprymna scolopes	esc.5S.gff	esc.5S.fa	esc.5S.stk	esc.5S.constraints	esc.U1.gff	esc.U1.fa	esc.U1.stk	esc.U1.constraints
Acropora palmata	apa.5S.gff	apa.5S.fa	apa.5S.stk	apa.5S.constraints	apa.U1.gff	apa.U1.fa	apa.U1.stk	apa.U1.constraints
Acropora millepora	ami.5S.gff	ami.5S.fa	ami.5S.stk	ami.5S.constraints	ami.U1.gff	ami.U1.fa	ami.U1.stk	ami.U1.constraints
Nematostella vectensis	nve.5S.gff	nve.5S.fa	nve.5S.stk	nve.5S.constraints	nve.U1.gff	nve.U1.fa	nve.U1.stk	nve.U1.constraints
Reniera spez	rsp.5S.gff	rsp.5S.fa	rsp.5S.stk	rsp.5S.constraints	rsp.U1.gff	rsp.U1.fa	rsp.U1.stk	rsp.U1.constraints
Trichoplax adhaerens	tad.5S.gff	tad.5S.fa	tad.5S.stk	tad.5S.constraints	tad.U1.gff	tad.U1.fa	tad.U1.stk	tad.U1.constraints

5s rDNA clusters

green=plus strand; blue=negative strand; filled=A-type; not filled=Q-type;

Organism	*.ps
Homo sapiens	hsa.5S.gff.10000.cluster.eps
Pongo pygmaeus	ppy.5S.gff.10000.cluster.eps
Macaca mulata	mac.5S.gff.10000.cluster.eps
Callithrix jacchus Marmoset	cjc.5S.gff.10000.cluster.eps
Tarsius syrichta	tsy.5S.gff.10000.cluster.eps
Otolemur garnettii	oga.5S.gff.10000.cluster.eps
Mus musculus	mmu.5S.gff.10000.cluster.eps
Rattus norvegicus	rno.5S.gff.10000.cluster.eps
Dipodomys ordii	dor.5S.gff.10000.cluster.eps
Spermophilus tridecemlineatus	str.5S.gff.10000.cluster.eps
Cavia porcellus	cpo.5S.gff.10000.cluster.eps
Ochotona princeps	opr.5S.gff.10000.cluster.eps
Oryctolagus cuniculus	ocu.5S.gff.10000.cluster.eps
Tupaia belangeri	tbe.5S.gff.10000.cluster.eps
Felis catus	fca.5S.gff.10000.cluster.eps
Canis familiaris	cfa.5S.gff.10000.cluster.eps
Vicugna pacos	vpa.5S.gff.10000.cluster.eps
Tursiops truncatus	ttr.5S.gff.10000.cluster.eps
Bos taurus	bta.5S.gff.10000.cluster.eps
Sus scrofa	ssc.5S.gff.10000.cluster.eps
Equus caballus	eca.5S.gff.10000.cluster.eps
Myotis lucifugus	mlu.5S.gff.10000.cluster.eps
Pteropus vampyrus	pva.5S.gff.10000.cluster.eps
Erinaceus europaeus	eeu.5S.gff.10000.cluster.eps
Sorex araneus	sar.5S.gff.10000.cluster.eps
Loxodonta africana	laf.5S.gff.10000.cluster.eps
Echinops telfairi	ete.5S.gff.10000.cluster.eps
Procavia capensis	pca.5S.gff.10000.cluster.eps
Dasypus novemcinctus	dno.5S.gff.10000.cluster.eps
Choloepus hoffmanni	cho.5S.gff.10000.cluster.eps
Monodelphis domestica	mdo.5S.gff.10000.cluster.eps
Macropus eugenii	meu.5S.gff.10000.cluster.eps
Ornithorhynchus anatinus	oan.5S.gff.10000.cluster.eps
Taeniopygia guttata	tgu.5S.gff.10000.cluster.eps
Gallus gallus	gga.5S.gff.10000.cluster.eps
Xenopus tropicalis	xtr.5S.gff.10000.cluster.eps
Tetraodon nigroviridis	tni.5S.gff.10000.cluster.eps
Takifugu rubripes	tru.5S.gff.10000.cluster.eps
Gasterostreus aculeatus	gac.5S.gff.10000.cluster.eps
Oryzias latipes	ola.5S.gff.10000.cluster.eps
Danio rerio	dre.5S.gff.10000.cluster.eps
Callorhinchus mili	cmi.5S.gff.10000.cluster.eps
Petromyzon marinus	pma.5S.gff.10000.cluster.eps
Branchiostoma floridae	bfl.5S.gff.10000.cluster.eps
Ciona intestinalis	cin.5S.gff.10000.cluster.eps
Ciona savignyi	csa.5S.gff.10000.cluster.eps
Oikopleura dioica	odi.5S.gff.10000.cluster.eps
Saccoglossus kowalevskii	sko.5S.gff.10000.cluster.eps
Drosophila melanogaster	dme.5S.gff.10000.cluster.eps
Drosophila simulans	dsi.5S.gff.10000.cluster.eps
Drosophila sechellia	dse.5S.gff.10000.cluster.eps
Drosophila erecta	der.5S.gff.10000.cluster.eps
Drosophila yakuba	dya.5S.gff.10000.cluster.eps
Drosophila ananassae	dan.5S.gff.10000.cluster.eps
Drosophila pseudoobscura	dps.5S.gff.10000.cluster.eps
Drosophila persimilis	dpe.5S.gff.10000.cluster.eps
Drosophila willistoni	dwi.5S.gff.10000.cluster.eps
Drosophila virilis	dvi.5S.gff.10000.cluster.eps
Drosophila mojavensis	dmo.5S.gff.10000.cluster.eps
Drosophila grimshawi	dgr.5S.gff.10000.cluster.eps
Anopheles gambiae	aga.5S.gff.10000.cluster.eps
Aedes aegypti	aae.5S.gff.10000.cluster.eps
Bombyx mori	bmo.5S.gff.10000.cluster.eps
Tribolium castaneum	tca.5S.gff.10000.cluster.eps
Apis mellifera	ame.5S.gff.10000.cluster.eps
Nasonia vitripennis	nvi.5S.gff.10000.cluster.eps
Pediculus humanus	phu.5S.gff.10000.cluster.eps
Acyrthosiphon pisum	api.5S.gff.10000.cluster.eps
Daphnia pulex	dpu.5S.gff.10000.cluster.eps
Ixodes scapularis	isc.5S.gff.10000.cluster.eps
Caenorhabditis remanei	cre.5S.gff.10000.cluster.eps
Caenorhabditis briggsae	cbr.5S.gff.10000.cluster.eps
Caenorhabditis brenneri	cbe.5S.gff.10000.cluster.eps
Caenorhabditis elegans	cel.5S.gff.10000.cluster.eps
Caenorhabditis japonica	cja.5S.gff.10000.cluster.eps
Haemonchus contortus	hco.5S.gff.10000.cluster.eps
Ancylostoma canium	acn.5S.gff.10000.cluster.eps
Pristionchus pacificus	ppa.5S.gff.10000.cluster.eps
Meloidogyne incognita	min.5S.gff.10000.cluster.eps
Meloidogyne hapla	mha.5S.gff.10000.cluster.eps
Brugia malayi	bma.5S.gff.10000.cluster.eps
Trichinella spiralis	tsp.5S.gff.10000.cluster.eps
Schistosoma mansoni	sma.5S.gff.10000.cluster.eps
Schistosoma japonicum	sja.5S.gff.10000.cluster.eps
Schmidtea mediterranea	sme.5S.gff.10000.cluster.eps
Helobdella robusta	hro.5S.gff.10000.cluster.eps
Capitella sp	cca.5S.gff.10000.cluster.eps
Alvinella pompejana	apo.5S.gff.10000.cluster.eps
Lottia gigantea	lgi.5S.gff.10000.cluster.eps
Aplysia californica	aca.5S.gff.10000.cluster.eps
Biomphalaria glabrata	bgl.5S.gff.10000.cluster.eps
Euprymna scolopes	esc.5S.gff.10000.cluster.eps
Acropora palmata	apa.5S.gff.10000.cluster.eps
Acropora millepora	ami.5S.gff.10000.cluster.eps
Nematostella vectensis	nve.5S.gff.10000.cluster.eps
Reniera spez	rsp.5S.gff.10000.cluster.eps
Trichoplax adhaerens	tad.5S.gff.10000.cluster.eps