TransRate contents for Arabidopsis thaliana



S6.1: TransRate results for Arabidopsis thaliana assemblies

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Scores and read-based metrics can only be calculated for paired-end data. This data set consists of single-end data.

assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity3461720110819359642871038.9198101334221927074.79009459103215762213
oases5780910114892787627671355.39494272332622234145972.07497770133518322526
trans-abyss66004100965053180949766.50761198191968902693372.50447545112416532350
soap-trans-default50876100757628632860513.5985318627869701544980.7777836980313182016
rna-spades3695349867430621356797.3531866061114601580475.67217427104015782190
spades29929551064529569509980.8747716591115911532374.47182451109616382261
idba-tran324472001059927666394852.664160956411623080.7079736980312821839
bridger3001720110044330085271099.6610901287411763574.66313523111516282226
binpacker5914200976690817981535.6439037750451066.83681838137518792617
shannon2768520010604301780201090.0494901200131649576.08368524111616072176
assemblyn10gcbases_nproportion_nCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50p_cov50cov75
trinity34910.4246300.031053310530.897040.64213208290.4307292750.1917972090.149075317
oases39450.4277700.054291542910.939141.12267202810.41938108020.2233794540.19557372
trans-abyss40910.4277300.053643536430.812721.10927241860.50013125290.2590898820.204357142
soap-trans-default49530.424200.040960409600.805090.847222660.4604393530.1934164040.132434032
rna-spades36620.424035002.0e-0531615316150.855550.65376205780.4255391950.1901471470.147795109
spades35850.42415002.0e-0526496264960.88530.5479195780.4048587370.1806770640.146075260
idba-tran29550.4267900.029438294380.907260.60874200890.4154191800.1898367140.138844372
bridger34820.4251200.026811268110.893190.55442192650.3983777500.1602662560.129374596
binpacker40240.4279200.0572657260.968210.1184141890.0866218500.0382616500.034121258
shannon33550.4252900.025053250530.904930.51806166710.3447386010.1778671750.148375550
assemblyp_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.1099538480.0795711940.024690.15512NANANANA
oases0.1524453890.1114416230.033560.19207NANANANA
trans-abyss0.1476949260.1018611900.024610.20992NANANANA
soap-trans-default0.0833825830.053416300.013030.1479NANANANA
rna-spades0.1056536910.0763210490.021690.15415NANANANA
spades0.1087738900.0804411370.023510.151NANANANA
idba-tran0.0904128450.058836260.012940.14613NANANANA
bridger0.0950432600.067419550.019750.132NANANANA
binpacker0.026018500.017582500.005170.03029NANANANA
shannon0.1147739970.0826510990.022730.14777NANANANA