TransRate contents for Candida albicans

S6.1: TransRate results for Candida albicans assemblies

S6.1: TransRate results for Candida albicans assemblies

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assembly	n_seqs	smallest	largest	n_bases	mean_len	n_under_200	n_over_1k	n_over_10k	n_with_orf	mean_orf_percent	n90	n70	n50	n30
trinity	8970	201	9485	9391261	1046.96332	0	3415	0	5144	81.69261	453	1050	1635	2330
oases	24818	100	11143	26010636	1033.27089	2477	9802	6	14879	79.537	564	1097	1629	2321
trans-abyss	26356	100	11036	22581342	825.78331	5723	7970	4	12179	81.46816	485	1069	1659	2423
soap-trans-default	14927	100	10036	8947594	551.90025	5150	2767	1	5115	84.14638	381	840	1349	2074
rna-spades	8297	65	10176	10567988	1258.18621	790	3936	4	5034	75.46275	701	1412	2079	2888
spades	6821	34	10912	9173845	1335.47779	561	3503	1	4437	77.02173	767	1469	2108	2935
idba-tran	9408	200	10969	8652155	919.65933	0	2947	2	5324	83.37413	416	840	1315	2001
bridger	8413	201	10055	10651444	1266.06965	0	4036	1	5672	79.39954	613	1250	1824	2606
binpacker	8324	201	10055	11072685	1330.21204	0	4263	1	5903	78.64989	658	1280	1846	2629
shannon	17225	200	8054	12793669	742.7384	0	4077	0	8112	87.68973	318	669	1093	1628

assembly	n10	gc	bases_n	proportion_n	fragments	fragments_mapped	p_fragments_mapped	good_mappings	p_good_mapping	bad_mappings	potential_bridges	bases_uncovered	p_bases_uncovered	contigs_uncovbase	p_contigs_uncovbase
trinity	3802	0.3492	0	0.0	11168529	9354646	0.83759	8693416	0.77839	661230	0	1222238	0.13015	3405	0.3796
oases	3766	0.34917	0	0.0	11168529	1352386	0.12109	1235497	0.11062	116889	0	22575199	0.86792	22178	0.89363
trans-abyss	4216	0.34771	0	0.0	11168529	1029138	0.09215	968259	0.0867	60879	0	18560427	0.82194	24531	0.93076
soap-trans-default	4992	0.34729	1282	0.00014	11168529	10428522	0.93374	9310169	0.83361	1118353	0	169722	0.01897	7684	0.51477
rna-spades	4761	0.3448	11627	0.0011	11168529	8826917	0.79034	8193396	0.73361	633521	0	1697403	0.16062	3644	0.43919
spades	4691	0.34601	4525	0.00049	11168529	10758710	0.96331	9927143	0.88885	831567	0	27010	0.00294	1711	0.25084
idba-tran	3263	0.34648	0	0.0	11168529	9563445	0.85629	8075900	0.72309	1487545	0	24984	0.00289	3141	0.33386
bridger	4284	0.3475	0	0.0	11168529	8068063	0.72239	7473892	0.66919	594171	0	3326590	0.31231	3868	0.45976
binpacker	4367	0.3477	0	0.0	11168529	7967472	0.71339	7382929	0.66105	584543	0	3991753	0.3605	4076	0.48967
shannon	2556	0.35453	0	0.0	11168529	1911906	0.17119	1732137	0.15509	179769	0	6199186	0.48455	12363	0.71774

assembly	contigs_uncovered	p_contigs_uncovered	contigs_lowcovered	p_contigs_lowcovered	contigs_segmented	p_contigs_segmented	CRBB_hits	n_contigs_with_CRBB	p_contigs_with_CRBB	rbh_per_reference	n_refs_with_CRBB	p_refs_with_CRBB	cov25	p_cov25	cov50
trinity	8970	1.0	8970	1.0	635	0.07079	7100	7100	0.79153	0.57161	5376	0.43282	2485	0.20006	2080
oases	24818	1.0	24818	1.0	736	0.02966	19566	19566	0.78838	1.57524	6257	0.50374	3206	0.25811	2684
trans-abyss	26356	1.0	26356	1.0	829	0.03145	18792	18792	0.71301	1.51292	6722	0.54118	5021	0.40423	4333
soap-trans-default	14927	1.0	14927	1.0	887	0.05942	10340	10340	0.6927	0.83246	6245	0.50278	2936	0.23637	2162
rna-spades	8297	1.0	8297	1.0	870	0.10486	6728	6728	0.8109	0.54166	5182	0.4172	2422	0.19499	2167
spades	6821	1.0	6821	1.0	639	0.09368	5554	5554	0.81425	0.44715	4893	0.39393	2153	0.17334	1947
idba-tran	9408	1.0	9408	1.0	939	0.09981	7316	7316	0.77764	0.589	5669	0.4564	2865	0.23066	2180
bridger	8413	1.0	8413	1.0	770	0.09153	7039	7039	0.83668	0.5667	5285	0.42549	2285	0.18396	1902
binpacker	8324	1.0	8324	1.0	737	0.08854	7130	7130	0.85656	0.57403	5193	0.41808	2273	0.183	1903
shannon	17225	1.0	17225	1.0	4851	0.28163	13440	13440	0.78026	1.08204	6399	0.51518	4500	0.36229	3714

assembly	p_cov50	cov75	p_cov75	cov85	p_cov85	cov95	p_cov95	reference_coverage	score	optimal_score	cutoff	weighted
trinity	0.16746	1813	0.14596	1711	0.13775	1609	0.12954	0.18357	0.36563	0.45572	0.36771	0.0
oases	0.21609	2316	0.18646	2172	0.17487	2011	0.1619	0.23593	0.00266	0.05827	0.55043	0.0
trans-abyss	0.34884	3742	0.30126	3523	0.28363	3224	0.25956	0.3824	0.00327	0.03363	0.295	0.0
soap-trans-default	0.17406	1650	0.13284	1499	0.12068	1314	0.10579	0.19889	0.22604	0.48033	0.36251	0.0
rna-spades	0.17446	1962	0.15796	1884	0.15168	1776	0.14298	0.19819	0.29197	0.40623	0.27606	0.0
spades	0.15675	1776	0.14298	1723	0.13872	1620	0.13042	0.17457	0.45143	0.54236	0.03355	0.0
idba-tran	0.17551	1629	0.13115	1415	0.11392	1219	0.09814	0.1961	0.40589	0.41421	0.05753	0.0
bridger	0.15313	1656	0.13332	1569	0.12632	1442	0.11609	0.17196	0.21125	0.36308	0.31091	0.0
binpacker	0.15321	1658	0.13348	1573	0.12664	1446	0.11642	0.17137	0.16839	0.36772	0.31091	0.0
shannon	0.29901	3107	0.25014	2855	0.22985	2417	0.19459	0.30264	0.02696	0.05188	0.23318	0.0