TransRate contents for Candida albicans



S6.1: TransRate results for Candida albicans assemblies

back to top

assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity8970201948593912611046.96332034150514481.69261453105016352330
oases2481810011143260106361033.270892477980261487979.537564109716292321
trans-abyss263561001103622581342825.783315723797041217981.46816485106916592423
soap-trans-default14927100100368947594551.90025515027671511584.1463838184013492074
rna-spades82976510176105679881258.1862179039364503475.46275701141220792888
spades6821341091291738451335.4777956135031443777.02173767146921082935
idba-tran9408200109698652155919.65933029472532483.3741341684013152001
bridger841320110055106514441266.06965040361567279.39954613125018242606
binpacker832420110055110726851330.21204042631590378.64989658128018462629
shannon17225200805412793669742.7384040770811287.6897331866910931628
assemblyn10gcbases_nproportion_nfragmentsfragments_mappedp_fragments_mappedgood_mappingsp_good_mappingbad_mappingspotential_bridgesbases_uncoveredp_bases_uncoveredcontigs_uncovbasep_contigs_uncovbase
trinity38020.349200.01116852993546460.8375986934160.77839661230012222380.1301534050.3796
oases37660.3491700.01116852913523860.1210912354970.110621168890225751990.86792221780.89363
trans-abyss42160.3477100.01116852910291380.092159682590.0867608790185604270.82194245310.93076
soap-trans-default49920.3472912820.0001411168529104285220.9337493101690.83361111835301697220.0189776840.51477
rna-spades47610.3448116270.00111116852988269170.7903481933960.73361633521016974030.1606236440.43919
spades46910.3460145250.0004911168529107587100.9633199271430.888858315670270100.0029417110.25084
idba-tran32630.3464800.01116852995634450.8562980759000.7230914875450249840.0028931410.33386
bridger42840.347500.01116852980680630.7223974738920.66919594171033265900.3123138680.45976
binpacker43670.347700.01116852979674720.7133973829290.66105584543039917530.360540760.48967
shannon25560.3545300.01116852919119060.1711917321370.15509179769061991860.48455123630.71774
assemblycontigs_uncoveredp_contigs_uncoveredcontigs_lowcoveredp_contigs_lowcoveredcontigs_segmentedp_contigs_segmentedCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50
trinity89701.089701.06350.07079710071000.791530.5716153760.4328224850.200062080
oases248181.0248181.07360.0296619566195660.788381.5752462570.5037432060.258112684
trans-abyss263561.0263561.08290.0314518792187920.713011.5129267220.5411850210.404234333
soap-trans-default149271.0149271.08870.0594210340103400.69270.8324662450.5027829360.236372162
rna-spades82971.082971.08700.10486672867280.81090.5416651820.417224220.194992167
spades68211.068211.06390.09368555455540.814250.4471548930.3939321530.173341947
idba-tran94081.094081.09390.09981731673160.777640.58956690.456428650.230662180
bridger84131.084131.07700.09153703970390.836680.566752850.4254922850.183961902
binpacker83241.083241.07370.08854713071300.856560.5740351930.4180822730.1831903
shannon172251.0172251.048510.2816313440134400.780261.0820463990.5151845000.362293714
assemblyp_cov50cov75p_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.1674618130.1459617110.1377516090.129540.183570.365630.455720.367710.0
oases0.2160923160.1864621720.1748720110.16190.235930.002660.058270.550430.0
trans-abyss0.3488437420.3012635230.2836332240.259560.38240.003270.033630.2950.0
soap-trans-default0.1740616500.1328414990.1206813140.105790.198890.226040.480330.362510.0
rna-spades0.1744619620.1579618840.1516817760.142980.198190.291970.406230.276060.0
spades0.1567517760.1429817230.1387216200.130420.174570.451430.542360.033550.0
idba-tran0.1755116290.1311514150.1139212190.098140.19610.405890.414210.057530.0
bridger0.1531316560.1333215690.1263214420.116090.171960.211250.363080.310910.0
binpacker0.1532116580.1334815730.1266414460.116420.171370.168390.367720.310910.0
shannon0.2990131070.2501428550.2298524170.194590.302640.026960.051880.233180.0