TransRate contents for Homo sapiens + EBOV 23h

S6.1: TransRate results for Homo sapiens + EBOV 23h assemblies

S6.1: TransRate results for Homo sapiens + EBOV 23h assemblies

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assembly	n_seqs	smallest	largest	n_bases	mean_len	n_under_200	n_over_1k	n_over_10k	n_with_orf	mean_orf_percent	n90	n70	n50	n30
trinity	97849	178	20401	115578380	1181.17592	8	27771	445	27267	53.73373	367	1520	3035	4759
oases	178498	100	23109	301780980	1672.57489	21653	83481	1144	73470	47.1938	860	2177	3512	5185
trans-abyss	213005	100	21517	131712188	558.14264	97723	32834	247	34492	53.73122	403	1134	2312	4194
soap-trans-default	131711	100	18919	64547511	421.63548	67988	13407	94	12594	51.41692	325	981	2483	4676
rna-spades	206133	49	27327	102095122	415.83765	92492	18612	176	16505	47.53883	272	849	2635	5246
spades	93814	55	20713	63872058	670.87929	10280	13234	158	11884	49.53084	258	613	1800	3716
idba-tran	78116	200	15346	57271805	733.16356	0	14183	22	14903	52.33453	307	563	1103	2100
bridger	83744	201	22383	87621316	1046.29963	0	20547	383	19042	48.88316	331	1200	2733	4494
binpacker	12291	200	21781	43913385	3572.80815	0	10860	367	10314	46.96748	1954	3425	4709	6513
shannon	84456	200	16736	60817797	720.11221	0	14993	38	18020	61.57702	263	572	1419	2635

assembly	n10	gc	bases_n	proportion_n	fragments	fragments_mapped	p_fragments_mapped	good_mappings	p_good_mapping	bad_mappings	potential_bridges	bases_uncovered	p_bases_uncovered	contigs_uncovbase	p_contigs_uncovbase
trinity	8025	0.48187	0	0.0	23930250	6698386	0.27991	6380448	0.26663	317938	0	70120282	0.60669	54523	0.55722
oases	8314	0.48216	0	0.0	23930250	2886955	0.12064	2732996	0.11421	153959	0	283104704	0.93811	162721	0.91161
trans-abyss	15104	0.4759	0	0.0	23930250	3370092	0.14083	3079184	0.12867	290908	0	81000058	0.61498	145013	0.6808
soap-trans-default	18919	0.46715	68238	0.00106	23930250	20608713	0.8612	19437442	0.81225	1171271	0	8164500	0.12649	69875	0.53052
rna-spades	27327	0.46264	13568	0.00013	23930250	8956139	0.37426	8482589	0.35447	473550	0	19628166	0.19225	50926	0.24705
spades	7285	0.46659	18247	0.00029	23930250	15568880	0.65059	14595365	0.60991	973515	0	1198914	0.01877	33583	0.35797
idba-tran	4153	0.46948	0	0.0	23930250	13153379	0.54965	10051744	0.42004	3101635	0	627792	0.01096	31965	0.4092
bridger	7868	0.4762	0	0.0	23930250	10267677	0.42907	9749289	0.4074	518388	0	42233927	0.48201	48025	0.57347
binpacker	10116	0.48513	0	0.0	23930250	8224019	0.34367	7858560	0.32839	365459	0	35852196	0.81643	11199	0.91115
shannon	4865	0.47801	0	0.0	23930250	3265475	0.13646	2753695	0.11507	511780	0	28281717	0.46502	53173	0.62959

assembly	contigs_uncovered	p_contigs_uncovered	contigs_lowcovered	p_contigs_lowcovered	contigs_segmented	p_contigs_segmented	CRBB_hits	n_contigs_with_CRBB	p_contigs_with_CRBB	rbh_per_reference	n_refs_with_CRBB	p_refs_with_CRBB	cov25	p_cov25	cov50
trinity	97849	1.0	97849	1.0	4466	0.04564	56436	56436	0.57677	0.3168	28688	0.16104	8947	0.05022	5796
oases	178498	1.0	178498	1.0	2495	0.01398	128628	128628	0.72061	0.72205	29545	0.16585	13316	0.07475	9583
trans-abyss	213005	1.0	213005	1.0	8444	0.03964	103774	103774	0.48719	0.58253	41739	0.2343	16755	0.09405	10140
soap-trans-default	131711	1.0	131711	1.0	6972	0.05293	53370	53370	0.40521	0.29959	30625	0.17191	8806	0.04943	5013
rna-spades	206133	1.0	206133	1.0	5806	0.02817	58726	58726	0.28489	0.32966	33469	0.18788	10632	0.05968	6165
spades	93814	1.0	93814	1.0	3298	0.03515	38670	38670	0.4122	0.21707	24865	0.13958	8016	0.045	5084
idba-tran	78116	1.0	78116	1.0	5510	0.07054	49310	49310	0.63124	0.2768	29193	0.16387	10410	0.05844	5184
bridger	83744	1.0	83744	1.0	3850	0.04597	44070	44070	0.52625	0.24739	25701	0.14427	8766	0.04921	5351
binpacker	12291	1.0	12291	1.0	1214	0.09877	12000	12000	0.97632	0.06736	6197	0.03479	2602	0.01461	2080
shannon	84456	1.0	84456	1.0	9124	0.10803	52684	52684	0.6238	0.29574	22741	0.12766	10418	0.05848	6143

assembly	p_cov50	cov75	p_cov75	cov85	p_cov85	cov95	p_cov95	reference_coverage	score	optimal_score	cutoff	weighted
trinity	0.03254	3706	0.0208	2916	0.01637	1902	0.01068	0.07324	0.07829	0.14025	0.16164	0.0
oases	0.05379	6463	0.03628	5131	0.0288	3295	0.0185	0.10789	0.00241	0.03191	0.01581	0.0
trans-abyss	0.05692	5833	0.03274	4359	0.02447	2680	0.01504	0.11747	0.00831	0.05168	0.1589	0.0
soap-trans-default	0.02814	3096	0.01738	2419	0.01358	1504	0.00844	0.06869	0.09522	0.39598	0.09155	0.0
rna-spades	0.03461	3749	0.02104	2866	0.01609	1851	0.01039	0.08193	0.05117	0.21737	0.01115	0.0
spades	0.02854	3320	0.01864	2670	0.01499	1651	0.00927	0.06837	0.25146	0.38949	0.02772	0.0
idba-tran	0.0291	2102	0.0118	1263	0.00709	561	0.00315	0.06954	0.2276	0.24431	0.25221	0.0
bridger	0.03004	3231	0.01814	2501	0.01404	1614	0.00906	0.06884	0.15148	0.19635	0.05332	0.0
binpacker	0.01168	1491	0.00837	1235	0.00693	873	0.0049	0.02631	0.01792	0.0675	0.05312	0.0
shannon	0.03448	3462	0.01943	2485	0.01395	1275	0.00716	0.07719	0.02652	0.04847	0.35982	0.0