TransRate contents for Homo sapiens + EBOV 23h



S6.1: TransRate results for Homo sapiens + EBOV 23h assemblies

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assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity97849178204011155783801181.175928277714452726753.73373367152030354759
oases178498100231093017809801672.57489216538348111447347047.1938860217735125185
trans-abyss21300510021517131712188558.1426497723328342473449253.73122403113423124194
soap-trans-default1317111001891964547511421.635486798813407941259451.4169232598124834676
rna-spades2061334927327102095122415.8376592492186121761650547.5388327284926355246
spades93814552071363872058670.8792910280132341581188449.5308425861318003716
idba-tran781162001534657271805733.16356014183221490352.3345330756311032100
bridger8374420122383876213161046.299630205473831904248.88316331120027334494
binpacker1229120021781439133853572.808150108603671031446.967481954342547096513
shannon844562001673660817797720.11221014993381802061.5770226357214192635
assemblyn10gcbases_nproportion_nfragmentsfragments_mappedp_fragments_mappedgood_mappingsp_good_mappingbad_mappingspotential_bridgesbases_uncoveredp_bases_uncoveredcontigs_uncovbasep_contigs_uncovbase
trinity80250.4818700.02393025066983860.2799163804480.266633179380701202820.60669545230.55722
oases83140.4821600.02393025028869550.1206427329960.1142115395902831047040.938111627210.91161
trans-abyss151040.475900.02393025033700920.1408330791840.128672909080810000580.614981450130.6808
soap-trans-default189190.46715682380.0010623930250206087130.8612194374420.812251171271081645000.12649698750.53052
rna-spades273270.46264135680.000132393025089561390.3742684825890.354474735500196281660.19225509260.24705
spades72850.46659182470.0002923930250155688800.65059145953650.60991973515011989140.01877335830.35797
idba-tran41530.4694800.023930250131533790.54965100517440.42004310163506277920.01096319650.4092
bridger78680.476200.023930250102676770.4290797492890.40745183880422339270.48201480250.57347
binpacker101160.4851300.02393025082240190.3436778585600.328393654590358521960.81643111990.91115
shannon48650.4780100.02393025032654750.1364627536950.115075117800282817170.46502531730.62959
assemblycontigs_uncoveredp_contigs_uncoveredcontigs_lowcoveredp_contigs_lowcoveredcontigs_segmentedp_contigs_segmentedCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50
trinity978491.0978491.044660.0456456436564360.576770.3168286880.1610489470.050225796
oases1784981.01784981.024950.013981286281286280.720610.72205295450.16585133160.074759583
trans-abyss2130051.02130051.084440.039641037741037740.487190.58253417390.2343167550.0940510140
soap-trans-default1317111.01317111.069720.0529353370533700.405210.29959306250.1719188060.049435013
rna-spades2061331.02061331.058060.0281758726587260.284890.32966334690.18788106320.059686165
spades938141.0938141.032980.0351538670386700.41220.21707248650.1395880160.0455084
idba-tran781161.0781161.055100.0705449310493100.631240.2768291930.16387104100.058445184
bridger837441.0837441.038500.0459744070440700.526250.24739257010.1442787660.049215351
binpacker122911.0122911.012140.0987712000120000.976320.0673661970.0347926020.014612080
shannon844561.0844561.091240.1080352684526840.62380.29574227410.12766104180.058486143
assemblyp_cov50cov75p_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.0325437060.020829160.0163719020.010680.073240.078290.140250.161640.0
oases0.0537964630.0362851310.028832950.01850.107890.002410.031910.015810.0
trans-abyss0.0569258330.0327443590.0244726800.015040.117470.008310.051680.15890.0
soap-trans-default0.0281430960.0173824190.0135815040.008440.068690.095220.395980.091550.0
rna-spades0.0346137490.0210428660.0160918510.010390.081930.051170.217370.011150.0
spades0.0285433200.0186426700.0149916510.009270.068370.251460.389490.027720.0
idba-tran0.029121020.011812630.007095610.003150.069540.22760.244310.252210.0
bridger0.0300432310.0181425010.0140416140.009060.068840.151480.196350.053320.0
binpacker0.0116814910.0083712350.006938730.00490.026310.017920.06750.053120.0
shannon0.0344834620.0194324850.0139512750.007160.077190.026520.048470.359820.0