TransRate contents for Homo sapiens + EBOV 3h



S6.1: TransRate results for Homo sapiens + EBOV 3h assemblies

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assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity96550181193581094967151134.079557271433892701454.50638355139528064521
oases218483100215053189362391442.461425101981286978874748.70184735173227944207
trans-abyss22711710025283127448712497.24984108582307401543373455.63372374103921824064
soap-trans-default1327511001891562753613401.069777117113101661272452.66849323101124864677
rna-spades197477492233094274289395.77991460171861301578750.2704226884125665108
spades85257552011260900677708.548154655127651281185651.5076425560218303700
idba-tran750872001780354494901725.7568013493211475354.4688630355310922090
bridger8249520119904831879861008.400340204262191932751.84573320114525404123
binpacker18852141892567527753582.374010164648154744.282061972351250676578
shannon103815200195951041264941003.000470282211843000858.16531332109221933651
assemblyn10gcbases_nproportion_nfragmentsfragments_mappedp_fragments_mappedgood_mappingsp_good_mappingbad_mappingspotential_bridgesbases_uncoveredp_bases_uncoveredcontigs_uncovbasep_contigs_uncovbase
trinity76910.4813800.01564976359798720.3821156548620.361343250100653260030.5966514760.53315
oases71230.4774300.0156497639107360.058198112220.051849951402989188310.937241990210.91092
trans-abyss252830.4761500.01564976344865510.2866841530280.265373335230740322760.580881494910.65821
soap-trans-default189150.46951671400.0010715649763126614640.80905116347160.743441026748069144060.11018633750.4774
rna-spades223300.46516129810.000141564976390833600.5804285760300.5485073300152137960.16138387470.19621
spades69450.4705124710.000215649763142832720.91268134164900.857386678206697100.011220310.25841
idba-tran40960.4722500.015649763129392370.8268111109670.70998182827004936820.00906287070.38232
bridger70070.4769300.01564976365454660.4182561416420.392444038240396632230.47679432070.52375
binpacker96960.4621800.01564976323130620.147821731200.13886139942056122830.8311116620.8817
shannon62760.4814600.01564976321873850.1397719686800.12582187050721749600.69315796040.76679
assemblycontigs_uncoveredp_contigs_uncoveredcontigs_lowcoveredp_contigs_lowcoveredcontigs_segmentedp_contigs_segmentedCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50
trinity965501.0965501.048670.0504157642576420.597020.32357294620.16538103310.057996936
oases2184831.02184831.031310.014331601391601390.732960.89894323380.18153161310.0905511300
trans-abyss2271171.02271171.0108290.047681180181180180.519640.66249450460.25286172430.096799924
soap-trans-default1327511.01327511.077850.0586456912569120.428710.31947318420.1787491700.051485167
rna-spades1974771.01974771.063640.0322358348583480.295470.32753335720.18846108340.060826544
spades852571.0852571.035640.041837982379820.44550.21321244460.1372386080.048325796
idba-tran750871.0750871.056870.0757448602486020.647280.27283287840.16158104220.05855148
bridger824951.0824951.040810.0494745349453490.549720.25457264750.1486289850.050445517
binpacker18851.018851.02260.11989185318530.983020.01049900.005563980.00223328
shannon1038151.01038151.0101740.09871460714600.688340.40114260020.14596140750.079019207
assemblyp_cov50cov75p_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.0389445770.0256936370.0204224090.013520.084340.11110.188690.14120.0
oases0.0634372220.0405455770.0313134090.019140.123280.00110.021090.357610.0
trans-abyss0.0557154490.0305939890.0223922960.012890.116450.020470.11490.332620.0
soap-trans-default0.02931590.0177324380.0136914540.008160.071330.111450.358720.132470.0
rna-spades0.0367340300.0226230900.0173518960.010640.084450.091620.352520.015190.0
spades0.0325439700.0222931390.0176219010.010670.077290.465440.574750.027140.0
idba-tran0.028920390.0114511820.006644870.002730.06920.413220.426770.040940.0
bridger0.0309734540.0193926750.0150216540.009280.070580.160340.199280.110720.0
binpacker0.001842510.001412100.001181460.000820.003610.00550.047230.271120.0
shannon0.0516854610.0306638140.0214119390.010880.110890.017610.050620.226910.0