TransRate contents for Homo sapiens + EBOV 3h

S6.1: TransRate results for Homo sapiens + EBOV 3h assemblies

S6.1: TransRate results for Homo sapiens + EBOV 3h assemblies

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assembly	n_seqs	smallest	largest	n_bases	mean_len	n_under_200	n_over_1k	n_over_10k	n_with_orf	mean_orf_percent	n90	n70	n50	n30
trinity	96550	181	19358	109496715	1134.07955	7	27143	389	27014	54.50638	355	1395	2806	4521
oases	218483	100	21505	318936239	1442.4614	25101	98128	697	88747	48.70184	735	1732	2794	4207
trans-abyss	227117	100	25283	127448712	497.24984	108582	30740	154	33734	55.63372	374	1039	2182	4064
soap-trans-default	132751	100	18915	62753613	401.06977	71171	13101	66	12724	52.66849	323	1011	2486	4677
rna-spades	197477	49	22330	94274289	395.779	91460	17186	130	15787	50.27042	268	841	2566	5108
spades	85257	55	20112	60900677	708.54815	4655	12765	128	11856	51.50764	255	602	1830	3700
idba-tran	75087	200	17803	54494901	725.7568	0	13493	21	14753	54.46886	303	553	1092	2090
bridger	82495	201	19904	83187986	1008.40034	0	20426	219	19327	51.84573	320	1145	2540	4123
binpacker	1885	214	18925	6752775	3582.37401	0	1646	48	1547	44.28206	1972	3512	5067	6578
shannon	103815	200	19595	104126494	1003.00047	0	28221	184	30008	58.16531	332	1092	2193	3651

assembly	n10	gc	bases_n	proportion_n	fragments	fragments_mapped	p_fragments_mapped	good_mappings	p_good_mapping	bad_mappings	potential_bridges	bases_uncovered	p_bases_uncovered	contigs_uncovbase	p_contigs_uncovbase
trinity	7691	0.48138	0	0.0	15649763	5979872	0.38211	5654862	0.36134	325010	0	65326003	0.5966	51476	0.53315
oases	7123	0.47743	0	0.0	15649763	910736	0.05819	811222	0.05184	99514	0	298918831	0.93724	199021	0.91092
trans-abyss	25283	0.47615	0	0.0	15649763	4486551	0.28668	4153028	0.26537	333523	0	74032276	0.58088	149491	0.65821
soap-trans-default	18915	0.46951	67140	0.00107	15649763	12661464	0.80905	11634716	0.74344	1026748	0	6914406	0.11018	63375	0.4774
rna-spades	22330	0.46516	12981	0.00014	15649763	9083360	0.58042	8576030	0.548	507330	0	15213796	0.16138	38747	0.19621
spades	6945	0.4705	12471	0.0002	15649763	14283272	0.91268	13416490	0.8573	866782	0	669710	0.011	22031	0.25841
idba-tran	4096	0.47225	0	0.0	15649763	12939237	0.8268	11110967	0.70998	1828270	0	493682	0.00906	28707	0.38232
bridger	7007	0.47693	0	0.0	15649763	6545466	0.41825	6141642	0.39244	403824	0	39663223	0.47679	43207	0.52375
binpacker	9696	0.46218	0	0.0	15649763	2313062	0.1478	2173120	0.13886	139942	0	5612283	0.83111	1662	0.8817
shannon	6276	0.48146	0	0.0	15649763	2187385	0.13977	1968680	0.1258	218705	0	72174960	0.69315	79604	0.76679

assembly	contigs_uncovered	p_contigs_uncovered	contigs_lowcovered	p_contigs_lowcovered	contigs_segmented	p_contigs_segmented	CRBB_hits	n_contigs_with_CRBB	p_contigs_with_CRBB	rbh_per_reference	n_refs_with_CRBB	p_refs_with_CRBB	cov25	p_cov25	cov50
trinity	96550	1.0	96550	1.0	4867	0.05041	57642	57642	0.59702	0.32357	29462	0.16538	10331	0.05799	6936
oases	218483	1.0	218483	1.0	3131	0.01433	160139	160139	0.73296	0.89894	32338	0.18153	16131	0.09055	11300
trans-abyss	227117	1.0	227117	1.0	10829	0.04768	118018	118018	0.51964	0.66249	45046	0.25286	17243	0.09679	9924
soap-trans-default	132751	1.0	132751	1.0	7785	0.05864	56912	56912	0.42871	0.31947	31842	0.17874	9170	0.05148	5167
rna-spades	197477	1.0	197477	1.0	6364	0.03223	58348	58348	0.29547	0.32753	33572	0.18846	10834	0.06082	6544
spades	85257	1.0	85257	1.0	3564	0.0418	37982	37982	0.4455	0.21321	24446	0.13723	8608	0.04832	5796
idba-tran	75087	1.0	75087	1.0	5687	0.07574	48602	48602	0.64728	0.27283	28784	0.16158	10422	0.0585	5148
bridger	82495	1.0	82495	1.0	4081	0.04947	45349	45349	0.54972	0.25457	26475	0.14862	8985	0.05044	5517
binpacker	1885	1.0	1885	1.0	226	0.11989	1853	1853	0.98302	0.0104	990	0.00556	398	0.00223	328
shannon	103815	1.0	103815	1.0	10174	0.098	71460	71460	0.68834	0.40114	26002	0.14596	14075	0.07901	9207

assembly	p_cov50	cov75	p_cov75	cov85	p_cov85	cov95	p_cov95	reference_coverage	score	optimal_score	cutoff	weighted
trinity	0.03894	4577	0.02569	3637	0.02042	2409	0.01352	0.08434	0.1111	0.18869	0.1412	0.0
oases	0.06343	7222	0.04054	5577	0.03131	3409	0.01914	0.12328	0.0011	0.02109	0.35761	0.0
trans-abyss	0.05571	5449	0.03059	3989	0.02239	2296	0.01289	0.11645	0.02047	0.1149	0.33262	0.0
soap-trans-default	0.029	3159	0.01773	2438	0.01369	1454	0.00816	0.07133	0.11145	0.35872	0.13247	0.0
rna-spades	0.03673	4030	0.02262	3090	0.01735	1896	0.01064	0.08445	0.09162	0.35252	0.01519	0.0
spades	0.03254	3970	0.02229	3139	0.01762	1901	0.01067	0.07729	0.46544	0.57475	0.02714	0.0
idba-tran	0.0289	2039	0.01145	1182	0.00664	487	0.00273	0.0692	0.41322	0.42677	0.04094	0.0
bridger	0.03097	3454	0.01939	2675	0.01502	1654	0.00928	0.07058	0.16034	0.19928	0.11072	0.0
binpacker	0.00184	251	0.00141	210	0.00118	146	0.00082	0.00361	0.0055	0.04723	0.27112	0.0
shannon	0.05168	5461	0.03066	3814	0.02141	1939	0.01088	0.11089	0.01761	0.05062	0.22691	0.0