TransRate contents for Homo sapiens + EBOV 7h

S6.1: TransRate results for Homo sapiens + EBOV 7h assemblies

S6.1: TransRate results for Homo sapiens + EBOV 7h assemblies

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assembly	n_seqs	smallest	largest	n_bases	mean_len	n_under_200	n_over_1k	n_over_10k	n_with_orf	mean_orf_percent	n90	n70	n50	n30
trinity	121575	190	32958	131284068	1079.85444	4	31302	446	29666	52.15256	342	1240	2748	4548
oases	259024	100	30876	413418382	1577.23614	32539	115525	1461	93991	43.81502	795	2047	3352	4991
trans-abyss	275008	100	33717	159092044	517.394	127520	37375	281	38250	51.96626	376	1025	2240	4247
soap-trans-default	165909	100	18920	77171809	395.68574	86791	15236	116	13587	49.37891	315	885	2422	4774
rna-spades	243604	49	24540	120597574	418.92345	104828	21847	226	18063	45.99342	270	764	2448	5083
spades	125233	55	20514	76646332	597.31671	19577	15588	150	13212	48.01043	254	560	1533	3452
idba-tran	95730	200	14793	67564753	705.78453	0	16160	30	15558	50.41416	301	530	1020	1990
bridger	103284	201	20494	101788269	985.51827	0	23481	348	20628	47.63959	317	1018	2550	4357
binpacker	28888	201	20392	82239975	2846.85596	0	22925	425	20765	47.6602	1515	2799	4065	5677
shannon	133199	200	18276	134108876	1006.83095	0	35758	256	35397	54.6887	327	1124	2287	3740

assembly	n10	gc	bases_n	proportion_n	fragments	fragments_mapped	p_fragments_mapped	good_mappings	p_good_mapping	bad_mappings	potential_bridges	bases_uncovered	p_bases_uncovered	contigs_uncovbase	p_contigs_uncovbase
trinity	7861	0.47575	0	0.0	22268601	8826331	0.39636	8370969	0.37591	455362	0	76433503	0.5822	66998	0.55108
oases	8222	0.4709	0	0.0	22268601	1109641	0.04983	980599	0.04404	129042	0	391537099	0.94707	238630	0.92127
trans-abyss	33717	0.46957	0	0.0	22268601	4390754	0.19717	4021625	0.1806	369129	0	97946993	0.61566	188030	0.68373
soap-trans-default	18920	0.46135	88811	0.00115	22268601	17054362	0.76585	15707902	0.70538	1346460	0	10402229	0.13479	86391	0.52071
rna-spades	24540	0.45697	16169	0.00013	22268601	11411607	0.51245	10771691	0.48372	639916	0	24134507	0.20012	62821	0.25788
spades	7071	0.46313	32561	0.00042	22268601	19038680	0.85496	17799804	0.79932	1238876	0	1938339	0.02529	50920	0.4066
idba-tran	4151	0.46385	0	0.0	22268601	17703528	0.795	14861393	0.66737	2842135	0	754072	0.01116	38312	0.40021
bridger	7480	0.46965	0	0.0	22268601	8801425	0.39524	8236499	0.36987	564926	0	47773597	0.46934	59257	0.57373
binpacker	8773	0.47739	0	0.0	22268601	7013523	0.31495	6595135	0.29616	418388	0	62389157	0.75862	25451	0.88102
shannon	6445	0.47456	0	0.0	22268601	2426275	0.10895	2145413	0.09634	280862	0	95170904	0.70965	101586	0.76266

assembly	contigs_uncovered	p_contigs_uncovered	contigs_lowcovered	p_contigs_lowcovered	contigs_segmented	p_contigs_segmented	CRBB_hits	n_contigs_with_CRBB	p_contigs_with_CRBB	rbh_per_reference	n_refs_with_CRBB	p_refs_with_CRBB	cov25	p_cov25	cov50
trinity	121575	1.0	121575	1.0	5942	0.04888	64447	64447	0.5301	0.36177	32430	0.18204	10339	0.05804	6674
oases	259024	1.0	259024	1.0	3096	0.01195	172679	172679	0.66665	0.96933	35026	0.19662	15567	0.08738	11096
trans-abyss	275008	1.0	275008	1.0	11279	0.04101	124678	124678	0.45336	0.69988	48425	0.27183	19123	0.10735	11311
soap-trans-default	165909	1.0	165909	1.0	9618	0.05797	60007	60007	0.36169	0.33685	34295	0.19251	9939	0.05579	5547
rna-spades	243604	1.0	243604	1.0	7748	0.03181	62866	62866	0.25807	0.3529	36498	0.20488	11865	0.0666	7164
spades	125233	1.0	125233	1.0	5191	0.04145	52295	52295	0.41758	0.29356	31716	0.17804	9595	0.05386	5774
idba-tran	95730	1.0	95730	1.0	7371	0.077	55248	55248	0.57712	0.31013	32452	0.18217	11527	0.06471	5722
bridger	103284	1.0	103284	1.0	5051	0.0489	49021	49021	0.47462	0.27518	28801	0.16167	9808	0.05506	5902
binpacker	28888	1.0	28888	1.0	2725	0.09433	27114	27114	0.93859	0.1522	14295	0.08024	6017	0.03378	4633
shannon	133199	1.0	133199	1.0	11895	0.0893	84711	84711	0.63597	0.47552	28950	0.16251	15443	0.08669	10304

assembly	p_cov50	cov75	p_cov75	cov85	p_cov85	cov95	p_cov95	reference_coverage	score	optimal_score	cutoff	weighted
trinity	0.03746	4283	0.02404	3358	0.01885	2245	0.0126	0.08296	0.11471	0.19023	0.18733	0.0
oases	0.06229	7407	0.04158	5820	0.03267	3834	0.02152	0.12149	0.00086	0.01572	0.28093	0.0
trans-abyss	0.06349	6537	0.0367	4864	0.0273	2966	0.01665	0.12851	0.01175	0.07246	0.18921	0.0
soap-trans-default	0.03114	3452	0.01938	2701	0.01516	1733	0.00973	0.07571	0.08569	0.3314	0.24745	0.0
rna-spades	0.04021	4342	0.02437	3369	0.01891	2132	0.01197	0.09082	0.07834	0.29863	0.01577	0.0
spades	0.03241	3614	0.02029	2853	0.01602	1777	0.00998	0.07618	0.28049	0.50802	0.03131	0.0
idba-tran	0.03212	2313	0.01298	1372	0.0077	594	0.00333	0.07533	0.36781	0.38971	0.0357	0.0
bridger	0.03313	3639	0.02043	2836	0.01592	1801	0.01011	0.07521	0.14174	0.17706	0.01881	0.0
binpacker	0.02601	3235	0.01816	2606	0.01463	1715	0.00963	0.05603	0.02326	0.11378	0.33391	0.0
shannon	0.05784	6275	0.03522	4543	0.0255	2426	0.01362	0.1225	0.01259	0.03624	0.21922	0.0