TransRate contents for Homo sapiens + EBOV 7h



S6.1: TransRate results for Homo sapiens + EBOV 7h assemblies

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assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity121575190329581312840681079.854444313024462966652.15256342124027484548
oases259024100308764134183821577.236143253911552514619399143.81502795204733524991
trans-abyss27500810033717159092044517.394127520373752813825051.96626376102522404247
soap-trans-default1659091001892077171809395.6857486791152361161358749.3789131588524224774
rna-spades2436044924540120597574418.92345104828218472261806345.9934227076424485083
spades125233552051476646332597.3167119577155881501321248.0104325456015333452
idba-tran957302001479367564753705.78453016160301555850.4141630153010201990
bridger10328420120494101788269985.518270234813482062847.63959317101825504357
binpacker2888820120392822399752846.855960229254252076547.66021515279940655677
shannon133199200182761341088761006.830950357582563539754.6887327112422873740
assemblyn10gcbases_nproportion_nfragmentsfragments_mappedp_fragments_mappedgood_mappingsp_good_mappingbad_mappingspotential_bridgesbases_uncoveredp_bases_uncoveredcontigs_uncovbasep_contigs_uncovbase
trinity78610.4757500.02226860188263310.3963683709690.375914553620764335030.5822669980.55108
oases82220.470900.02226860111096410.049839805990.0440412904203915370990.947072386300.92127
trans-abyss337170.4695700.02226860143907540.1971740216250.18063691290979469930.615661880300.68373
soap-trans-default189200.46135888110.0011522268601170543620.76585157079020.7053813464600104022290.13479863910.52071
rna-spades245400.45697161690.0001322268601114116070.51245107716910.483726399160241345070.20012628210.25788
spades70710.46313325610.0004222268601190386800.85496177998040.799321238876019383390.02529509200.4066
idba-tran41510.4638500.022268601177035280.795148613930.66737284213507540720.01116383120.40021
bridger74800.4696500.02226860188014250.3952482364990.369875649260477735970.46934592570.57373
binpacker87730.4773900.02226860170135230.3149565951350.296164183880623891570.75862254510.88102
shannon64450.4745600.02226860124262750.1089521454130.096342808620951709040.709651015860.76266
assemblycontigs_uncoveredp_contigs_uncoveredcontigs_lowcoveredp_contigs_lowcoveredcontigs_segmentedp_contigs_segmentedCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50
trinity1215751.01215751.059420.0488864447644470.53010.36177324300.18204103390.058046674
oases2590241.02590241.030960.011951726791726790.666650.96933350260.19662155670.0873811096
trans-abyss2750081.02750081.0112790.041011246781246780.453360.69988484250.27183191230.1073511311
soap-trans-default1659091.01659091.096180.0579760007600070.361690.33685342950.1925199390.055795547
rna-spades2436041.02436041.077480.0318162866628660.258070.3529364980.20488118650.06667164
spades1252331.01252331.051910.0414552295522950.417580.29356317160.1780495950.053865774
idba-tran957301.0957301.073710.07755248552480.577120.31013324520.18217115270.064715722
bridger1032841.01032841.050510.048949021490210.474620.27518288010.1616798080.055065902
binpacker288881.0288881.027250.0943327114271140.938590.1522142950.0802460170.033784633
shannon1331991.01331991.0118950.089384711847110.635970.47552289500.16251154430.0866910304
assemblyp_cov50cov75p_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.0374642830.0240433580.0188522450.01260.082960.114710.190230.187330.0
oases0.0622974070.0415858200.0326738340.021520.121490.000860.015720.280930.0
trans-abyss0.0634965370.036748640.027329660.016650.128510.011750.072460.189210.0
soap-trans-default0.0311434520.0193827010.0151617330.009730.075710.085690.33140.247450.0
rna-spades0.0402143420.0243733690.0189121320.011970.090820.078340.298630.015770.0
spades0.0324136140.0202928530.0160217770.009980.076180.280490.508020.031310.0
idba-tran0.0321223130.0129813720.00775940.003330.075330.367810.389710.03570.0
bridger0.0331336390.0204328360.0159218010.010110.075210.141740.177060.018810.0
binpacker0.0260132350.0181626060.0146317150.009630.056030.023260.113780.333910.0
shannon0.0578462750.0352245430.025524260.013620.12250.012590.036240.219220.0