TransRate contents for Escherichia coli



S6.1: TransRate results for Escherichia coli assemblies

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Scores and read-based metrics can only be calculated for paired-end data. This data set consists of single-end data.

assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity4403201171482143836486.903470347392775.03612383495531014
oases7364100151133602307438.5844625457426152665.7172630258210512169
trans-abyss9555100103593081448247.6398751014453105972.7304426348310233220
soap-trans-default7007100123632579222302.575573225439199871.988072704969582244
rna-spades706712395802556747298.584262730340088873.776772504087411679
spades411956125682370141573.53484804881107369.469142614387581398
idba-tran3803200125552069405544.150670414194971.993012544086801208
bridger4254201127722117305497.720970363192674.590622383615821050
binpacker157207126641910671216.9872606616645.13338522116918092739
shannon4221200171452145566508.307510371293073.34472403675981125
assemblyn10gcbases_nproportion_nCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50p_cov50cov75
trinity26520.5117200.0339633960.771290.7857522830.5282318270.4227212960.29986826
oases151130.5113200.0553555350.751631.2806626180.6057417310.4005112330.28528758
trans-abyss103590.5083100.0635363530.664891.4699230380.702921940.04489610.0141127
soap-trans-default123630.5111600.0512751270.73171.1862629840.6904211900.275346670.15433373
rna-spades95800.50982008.0e-05514051400.727321.1892629680.6867211350.262615540.12818281
spades32870.510561004.0e-05336133610.815970.7776523970.55468760.202685090.11777283
idba-tran26670.5130300.0308630860.811460.7140222120.51189690.22425790.13397343
bridger26430.5124200.0329332930.774090.7619222490.5203617950.4153212810.29639810
binpacker74790.5088200.01121120.713380.02591950.02198350.0081260.0060221
shannon30110.5123400.0327232720.775170.7570622220.5141117590.4069912330.28528779
assemblyp_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.191126630.15345300.122630.31635NANANANA
oases0.175386180.142994900.113370.30558NANANANA
trans-abyss0.00625220.00509150.003470.02844NANANANA
soap-trans-default0.08632980.068952460.056920.19492NANANANA
rna-spades0.065022250.052061870.043270.17587NANANANA
spades0.065482350.054371930.044660.14391NANANANA
idba-tran0.079362960.068492370.054840.16029NANANANA
bridger0.187416490.150165200.120310.31082NANANANA
binpacker0.00486190.0044180.004160.00619NANANANA
shannon0.180246410.148315180.119850.3049NANANANA