TransRate contents for Homo sapiens



S6.1: TransRate results for Homo sapiens assemblies

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assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity36542718424438286479420783.9501815640206306074350.8153827561318403423
oases131614310025843843235288607.4417229269120720365616628742.0888633567112302362
trans-abyss176243910023693437845625166.093431260396596981535787751.92248284657194323693
soap-trans-default108786910023820241236376133.58194837283275021332657148.01834287773339123820
rna-spades6680195229250294083262382.28565212315498051653905646.2542524343911172963
spades3537285642266177477612491.7180437174309991372543046.127572513857001618
idba-tran28137120015954138699791492.94274023480202419352.459842413535661054
bridger27789220126339206635529743.582140431644133868345.1041928055213863163
binpacker2795720024003729182902608.230140226042022008242.565741406248135114770
shannon16248620018602117068086720.48106031290543122555.6978225561214462495
assemblyn10gcbases_nproportion_nfragmentsfragments_mappedp_fragments_mappedgood_mappingsp_good_mappingbad_mappingspotential_bridgesbases_uncoveredp_bases_uncoveredcontigs_uncovbasep_contigs_uncovbase
trinity63280.4955800.096093116294908920.3069276293950.28753186149701691222920.590351887890.51663
oases59800.499200.09609311670579210.0734559602490.06203109767207926481610.9400112492210.94915
trans-abyss236930.4811400.096093116209985140.21852202899020.2111570861202771441580.6329714944120.84792
soap-trans-default238200.469773957450.0016496093116636655760.66254567214040.5902869441720788234720.326757498020.68924
rna-spades292500.471119226940.0031496093116391253850.40716373097420.3882718156430630778870.214492087740.31253
spades46040.47786419510.0002496093116765347780.79646704530070.733176081771055356050.031191326000.37486
idba-tran26020.484800.096093116610313540.63513467139510.4861314317403031296640.022561113980.39591
bridger64350.4891700.096093116331589680.34507310264390.3228821325290869374800.420731360260.48949
binpacker74690.5149100.096093116262047860.2727250281340.2604611766520610718980.83754263180.94137
shannon43970.5003100.096093116249457590.2596209140740.2176440316850588852320.503648800.3993
assemblycontigs_uncoveredp_contigs_uncoveredcontigs_lowcoveredp_contigs_lowcoveredcontigs_segmentedp_contigs_segmentedCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50
trinity3654271.03654271.0690990.189091269311269310.347350.71255503310.28254336550.1889324342
oases13161431.013161431.0400170.03045598585598580.425383.14287802470.45048203910.1144711732
trans-abyss17624391.017624391.0918370.052112888002888000.163861.62123830980.46649513520.2882733169
soap-trans-default10878691.010878691.0886960.081531190581190580.109440.66835555320.31174152550.085647593
rna-spades6680191.06680191.0879430.1316597589975890.146090.54783510820.28676181080.1016510450
spades3537281.03537281.0606000.1713288378883780.249850.49613491370.27584144090.080897278
idba-tran2813711.02813711.0508970.1808988660886600.31510.49771478690.26872161360.090587451
bridger2778921.02778921.0544700.1960172799727990.261970.40867400980.2251130640.073347769
binpacker279571.0279571.043240.1546726506265060.94810.1488111700.062798750.055448113
shannon1624861.01624861.0399220.245777424774240.47650.43463343460.192819500.00533284
assemblyp_cov50cov75p_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.13665165530.09292134450.0754892830.052110.227440.058330.13180.419030.0
oases0.0658658130.0326339130.0219719900.011170.08810.000860.017930.145920.0
trans-abyss0.1862192450.10804146950.0824997780.054890.262190.005920.105880.104940.0
soap-trans-default0.0426240650.0228230360.0170420430.011470.091830.016640.267520.032150.0
rna-spades0.0586657110.0320643140.0242229320.016460.111190.137710.232010.014820.0
spades0.0408633490.018823390.0131314430.00810.080420.251640.396650.176870.0
idba-tran0.0418326220.0147214760.008296490.003640.083260.195740.250390.393260.0
bridger0.0436145080.0253135040.0196724240.013610.0850.10090.140930.149340.0
binpacker0.0455459660.0334950450.0283238810.021790.073030.009460.069560.369080.0
shannon0.001591010.00057670.00038430.000240.003730.032010.066340.317350.0