TransRate contents for Homo sapiens simulated



S6.1: TransRate results for Homo sapiens simulated assemblies

back to top

assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity1348420123646309904312298.3114108448191742943.378411173253338505525
oases46469100701541107233832370.186063884281358812405337.427361344281742666240
trans-abyss252721002505924282473921.117567850669677658245.49152555138025244253
soap-trans-default149651002412515259485971.869165703426046333136.27748701185330364577
rna-spades1176613121175203026351720.13777391605199532140.38284778180128584517
spades10537562122910674626979.838763126262257228439.61807517167331025188
idba-tran121512001793310489247863.241460273717266647.620233772714442683
bridger1045720125108180258761723.809510516682423142.21987757201231364580
binpacker1341520024808258519101927.0898207424147639243.57058913216033644804
shannon72552001802678014351075.3184023409210147.36729388115521373286
assemblyn10gcbases_nproportion_nfragmentsfragments_mappedp_fragments_mappedgood_mappingsp_good_mappingbad_mappingspotential_bridgesbases_uncoveredp_bases_uncoveredcontigs_uncovbasep_contigs_uncovbase
trinity94670.4972300.056962181164790450.2893147305330.258617485120155683890.50236109140.8094
oases109980.4913600.05696218161877480.1086328418380.0498933459100918798300.82981454670.97844
trans-abyss86180.4914300.056962181289463150.50817276430860.485291303229076898170.31668217110.85909
soap-trans-default90100.48533705240.0046256962181326536920.57325267527210.469665900971025571990.16758106210.70972
rna-spades78200.48631013030.0049956962181255242900.44809231291220.406042395168050283400.2476787930.74732
spades101730.48622144020.0013556962181484736980.85098455236410.79919295005701301860.012248820.46332
idba-tran55320.4853500.056962181422413690.74157338901760.59496835119301354930.0129246110.37947
bridger76940.4908600.056962181212455360.37298187025790.328332542957039881400.2212574150.70909
binpacker83710.4951700.056962181184226500.32342159284660.2796324941840111648620.43188104400.77823
shannon55520.4868500.056962181102736790.1803680683630.141642205316013612600.1744940650.5603
assemblycontigs_uncoveredp_contigs_uncoveredcontigs_lowcoveredp_contigs_lowcoveredcontigs_segmentedp_contigs_segmentedCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50
trinity134841.0134841.030690.227612452124520.923460.8502663690.4348930830.210522670
oases464691.0464691.029600.063741412414120.891172.8277291490.6247249340.336914143
trans-abyss252721.0252721.046840.1853418133181330.717511.2381797850.6681571320.486995604
soap-trans-default149651.0149651.037380.2497810623106230.709860.7253764650.4414527130.185251889
rna-spades117661.0117661.038120.3239811068110680.940680.7557568820.4699234900.238312734
spades105371.0105371.025710.244630163010.597990.4302554320.3709123180.158281783
idba-tran121511.0121511.029510.24286858585850.706530.5862164390.4396730830.210522029
bridger104571.0104571.026420.25265919091900.878840.6275259240.4045126630.181841991
binpacker134151.0134151.026770.1995512044120440.89780.822463260.4319628750.196312183
shannon72551.072551.019990.27553660166010.909860.4507334880.2381720620.14081585
assemblyp_cov50cov75p_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.1823122200.1515920000.1365717240.117720.243960.021680.111680.519540.0
oases0.282933270.2271829270.1998623030.157260.375480.00080.01070.261710.0
trans-abyss0.3826642460.2899337090.2532630760.210040.459440.038120.224310.515950.0
soap-trans-default0.1289912920.0882210560.072118260.05640.182470.032360.205410.380750.0
rna-spades0.1866819630.1340416830.1149213400.09150.24590.071850.191160.426020.0
spades0.1217511950.08169690.066177490.051140.160270.128320.466920.581420.0
idba-tran0.1385510180.069517060.048213730.025470.177640.147640.347940.551570.0
bridger0.1359513670.0933411680.079759570.065350.18770.064290.142180.431880.0
binpacker0.1490615280.1043413080.0893110820.073880.202810.027240.129430.431880.0
shannon0.1082312290.0839210970.074919120.062270.130610.014790.056170.432420.0