TransRate contents for Homo sapiens simulated

S6.1: TransRate results for Homo sapiens simulated assemblies

S6.1: TransRate results for Homo sapiens simulated assemblies

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assembly	n_seqs	smallest	largest	n_bases	mean_len	n_under_200	n_over_1k	n_over_10k	n_with_orf	mean_orf_percent	n90	n70	n50	n30
trinity	13484	201	23646	30990431	2298.31141	0	8448	191	7429	43.37841	1173	2533	3850	5525
oases	46469	100	70154	110723383	2370.18606	3884	28135	881	24053	37.42736	1344	2817	4266	6240
trans-abyss	25272	100	25059	24282473	921.11756	7850	6696	77	6582	45.49152	555	1380	2524	4253
soap-trans-default	14965	100	24125	15259485	971.86916	5703	4260	46	3331	36.27748	701	1853	3036	4577
rna-spades	11766	131	21175	20302635	1720.13777	391	6051	99	5321	40.38284	778	1801	2858	4517
spades	10537	56	21229	10674626	979.83876	3126	2622	57	2284	39.61807	517	1673	3102	5188
idba-tran	12151	200	17933	10489247	863.24146	0	2737	17	2666	47.6202	337	727	1444	2683
bridger	10457	201	25108	18025876	1723.80951	0	5166	82	4231	42.21987	757	2012	3136	4580
binpacker	13415	200	24808	25851910	1927.08982	0	7424	147	6392	43.57058	913	2160	3364	4804
shannon	7255	200	18026	7801435	1075.3184	0	2340	9	2101	47.36729	388	1155	2137	3286

assembly	n10	gc	bases_n	proportion_n	fragments	fragments_mapped	p_fragments_mapped	good_mappings	p_good_mapping	bad_mappings	potential_bridges	bases_uncovered	p_bases_uncovered	contigs_uncovbase	p_contigs_uncovbase
trinity	9467	0.49723	0	0.0	56962181	16479045	0.2893	14730533	0.2586	1748512	0	15568389	0.50236	10914	0.8094
oases	10998	0.49136	0	0.0	56962181	6187748	0.10863	2841838	0.04989	3345910	0	91879830	0.82981	45467	0.97844
trans-abyss	8618	0.49143	0	0.0	56962181	28946315	0.50817	27643086	0.48529	1303229	0	7689817	0.31668	21711	0.85909
soap-trans-default	9010	0.48533	70524	0.00462	56962181	32653692	0.57325	26752721	0.46966	5900971	0	2557199	0.16758	10621	0.70972
rna-spades	7820	0.4863	101303	0.00499	56962181	25524290	0.44809	23129122	0.40604	2395168	0	5028340	0.24767	8793	0.74732
spades	10173	0.48622	14402	0.00135	56962181	48473698	0.85098	45523641	0.79919	2950057	0	130186	0.0122	4882	0.46332
idba-tran	5532	0.48535	0	0.0	56962181	42241369	0.74157	33890176	0.59496	8351193	0	135493	0.01292	4611	0.37947
bridger	7694	0.49086	0	0.0	56962181	21245536	0.37298	18702579	0.32833	2542957	0	3988140	0.22125	7415	0.70909
binpacker	8371	0.49517	0	0.0	56962181	18422650	0.32342	15928466	0.27963	2494184	0	11164862	0.43188	10440	0.77823
shannon	5552	0.48685	0	0.0	56962181	10273679	0.18036	8068363	0.14164	2205316	0	1361260	0.17449	4065	0.5603

assembly	contigs_uncovered	p_contigs_uncovered	contigs_lowcovered	p_contigs_lowcovered	contigs_segmented	p_contigs_segmented	CRBB_hits	n_contigs_with_CRBB	p_contigs_with_CRBB	rbh_per_reference	n_refs_with_CRBB	p_refs_with_CRBB	cov25	p_cov25	cov50
trinity	13484	1.0	13484	1.0	3069	0.2276	12452	12452	0.92346	0.85026	6369	0.43489	3083	0.21052	2670
oases	46469	1.0	46469	1.0	2960	0.0637	41412	41412	0.89117	2.82772	9149	0.62472	4934	0.33691	4143
trans-abyss	25272	1.0	25272	1.0	4684	0.18534	18133	18133	0.71751	1.23817	9785	0.66815	7132	0.48699	5604
soap-trans-default	14965	1.0	14965	1.0	3738	0.24978	10623	10623	0.70986	0.72537	6465	0.44145	2713	0.18525	1889
rna-spades	11766	1.0	11766	1.0	3812	0.32398	11068	11068	0.94068	0.75575	6882	0.46992	3490	0.23831	2734
spades	10537	1.0	10537	1.0	2571	0.244	6301	6301	0.59799	0.43025	5432	0.37091	2318	0.15828	1783
idba-tran	12151	1.0	12151	1.0	2951	0.24286	8585	8585	0.70653	0.58621	6439	0.43967	3083	0.21052	2029
bridger	10457	1.0	10457	1.0	2642	0.25265	9190	9190	0.87884	0.62752	5924	0.40451	2663	0.18184	1991
binpacker	13415	1.0	13415	1.0	2677	0.19955	12044	12044	0.8978	0.8224	6326	0.43196	2875	0.19631	2183
shannon	7255	1.0	7255	1.0	1999	0.27553	6601	6601	0.90986	0.45073	3488	0.23817	2062	0.1408	1585

assembly	p_cov50	cov75	p_cov75	cov85	p_cov85	cov95	p_cov95	reference_coverage	score	optimal_score	cutoff	weighted
trinity	0.18231	2220	0.15159	2000	0.13657	1724	0.11772	0.24396	0.02168	0.11168	0.51954	0.0
oases	0.2829	3327	0.22718	2927	0.19986	2303	0.15726	0.37548	0.0008	0.0107	0.26171	0.0
trans-abyss	0.38266	4246	0.28993	3709	0.25326	3076	0.21004	0.45944	0.03812	0.22431	0.51595	0.0
soap-trans-default	0.12899	1292	0.08822	1056	0.07211	826	0.0564	0.18247	0.03236	0.20541	0.38075	0.0
rna-spades	0.18668	1963	0.13404	1683	0.11492	1340	0.0915	0.2459	0.07185	0.19116	0.42602	0.0
spades	0.12175	1195	0.0816	969	0.06617	749	0.05114	0.16027	0.12832	0.46692	0.58142	0.0
idba-tran	0.13855	1018	0.06951	706	0.04821	373	0.02547	0.17764	0.14764	0.34794	0.55157	0.0
bridger	0.13595	1367	0.09334	1168	0.07975	957	0.06535	0.1877	0.06429	0.14218	0.43188	0.0
binpacker	0.14906	1528	0.10434	1308	0.08931	1082	0.07388	0.20281	0.02724	0.12943	0.43188	0.0
shannon	0.10823	1229	0.08392	1097	0.07491	912	0.06227	0.13061	0.01479	0.05617	0.43242	0.0