TransRate contents for Mus musculus



S6.1: TransRate results for Mus musculus assemblies

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assemblyn_seqssmallestlargestn_basesmean_lenn_under_200n_over_1kn_over_10kn_with_orfmean_orf_percentn90n70n50n30
trinity6330518815758787261791243.598311217951262043352.20767413164328204137
oases24319610018273188947779748.2875145184517791224961945.3579536785016222909
trans-abyss13540210016948105153277719.9061857350296981012945253.7886525142525334028
soap-trans-default1017451001570953611903452.446885600212592361146451.45431377134526784482
rna-spades76473381913273461333908.3989525161193551661554443.57814516178030464652
spades445675620853515755871150.331192894130891371061144.85287416150129414582
idba-tran556392001351945526327818.24488012278261235854.2814730172315012673
bridger5418220120000669540241235.724480182571311613649.56206424157027714149
binpacker25032011472865148202602.804630203719173438.855791442247834674619
shannon530692001015652948200997.7237201690821701055.04317362107518792838
assemblyn10gcbases_nproportion_nfragmentsfragments_mappedp_fragments_mappedgood_mappingsp_good_mappingbad_mappingspotential_bridgesbases_uncoveredp_bases_uncoveredcontigs_uncovbasep_contigs_uncovbase
trinity66060.4869700.043321537213555140.49295197608930.4561415946210409166470.51973440730.6962
oases58490.486500.04332153729601410.0683327380870.063222205401717591850.909032405880.98928
trans-abyss83290.4864600.043321537123000090.28392114738150.264858261940660746000.628361135350.8385
soap-trans-default157090.48141450990.0008443321537359156380.82905321576180.74233758020063916430.11922727080.71461
rna-spades86500.481652284090.0031143321537208814360.48201188276070.434620538290243922440.33204495360.64776
spades74740.47995772650.001543321537370407830.85502335188050.77372352197806908940.0134221430.49685
idba-tran48190.4812100.043321537297710130.68721222699560.51406750105707789200.01711292730.52612
bridger69160.4864100.043321537201024370.46403183306920.4231317717450276945560.41364367750.67873
binpacker73000.4815100.043321537142886200.32983131483630.303511140257039131280.6006519490.77867
shannon44550.4806100.043321537189988830.43856163260860.3768626727970226029060.42689226750.42727
assemblycontigs_uncoveredp_contigs_uncoveredcontigs_lowcoveredp_contigs_lowcoveredcontigs_segmentedp_contigs_segmentedCRBB_hitsn_contigs_with_CRBBp_contigs_with_CRBBrbh_per_referencen_refs_with_CRBBp_refs_with_CRBBcov25p_cov25cov50
trinity633051.0633051.041220.0651140074400740.633030.38826211380.2048165310.1601613639
oases2431961.02431961.019960.008211923991923990.791131.86406318580.3086627060.026221559
trans-abyss1354021.01354021.065240.0481877403774030.571650.74992288320.27934214360.2076816659
soap-trans-default1017451.01017451.052100.0512145911459110.451240.44481241300.2337880620.078115217
rna-spades764731.0764731.051330.0671235065350650.458530.33973206540.2001183970.081356288
spades445671.0445671.026180.0587426827268270.601950.25991193400.1873866130.064074854
idba-tran556391.0556391.030410.0546638052380520.683910.36867217860.2110785720.083055081
bridger541821.0541821.038100.0703232404324040.598060.31395194580.1885279290.076825708
binpacker25031.025031.05960.23811240724070.961650.0233215130.0146614140.01371235
shannon530691.0530691.042400.079940555405550.764190.39292176690.171191100.0010729
assemblyp_cov50cov75p_cov75cov85p_cov85cov95p_cov95reference_coveragescoreoptimal_scorecutoffweighted
trinity0.13214110920.1074798430.0953675340.072990.218340.061850.221360.542290.0
oases0.01519210.008926980.006764270.004140.022110.000940.019210.323420.0
trans-abyss0.1614126330.1224109820.106483620.081020.247280.011080.115520.504930.0
soap-trans-default0.0505438040.0368632350.0313423520.022790.095390.03480.401380.449360.0
rna-spades0.0609245570.0441538990.0377829280.028370.106240.041630.177180.398230.0
spades0.0470336020.034931280.0303123600.022860.084570.190880.379530.425020.0
idba-tran0.0492328320.0274421140.0204812450.012060.091590.134950.294260.497230.0
bridger0.055341340.0400534870.0337825740.024940.099330.079520.180760.340030.0
binpacker0.0119710100.009798990.008717350.007120.01540.023070.130360.348060.0
shannon0.0002833.0e-0533.0e-0522.0e-050.001070.051160.183940.52760.0