miRDeep2

miRDeep home

Parameters used


miRDeep2 version2.0.0.8
Program call/mnt/prostlocal/programs/mirdeep/mirdeep2_0_0_8/bin/miRDeep2.pl /mnt/prostlocal2/projects/mh_bats_ncrna_annotation/2018/mirdeep2/rsi/rsi_short_name.fa /mnt/prostlocal2/projects/mh_bats_ncrna_annotation/2018/genomes/rsi.renamed.fa.mirdeep_formated /mnt/prostlocal2/projects/mh_bats_ncrna_annotation/2018/mirdeep2/rsi/rsi_mapping.arf none none none
Reads/mnt/prostlocal2/projects/mh_bats_ncrna_annotation/2018/mirdeep2/rsi/rsi_short_name.fa
Genome/mnt/prostlocal2/projects/mh_bats_ncrna_annotation/2018/genomes/rsi.renamed.fa.mirdeep_formated
Mappings/mnt/prostlocal2/projects/mh_bats_ncrna_annotation/2018/mirdeep2/rsi/rsi_mapping.arf
Reference mature miRNAsnone
Other mature miRNAsnone


Survey of miRDeep2 performance for score cut-offs -10 to 10
miRDeep2 scorefor details on how the log-odds score is calculated, see Friedlander et al., Nature Biotechnology, 2008. estimated signal-to-noisefor the given score cut-off, the signal-to-noise ratio is estimated as r = total miRNA hairpins reported / mean estimated false positive miRNA hairpins over 100 rounds of permuted controls. excision gearingthis is the minimum read stack height required for excising a potential miRNA precursor from the genome in this analysis.
1015.13
914.83
814.73
714.33
613.93
513.23
412.63
311.73
210.23
13.53
01.23
-113
-21.13
-313
-40.93
-50.93
-60.93
-70.93
-813
-913
-1013





novel miRNAs predicted by miRDeep2


provisional idthis is a provisional miRNA name assigned by miRDeep2. The first part of the id designates the chromosome or genome contig on which the miRNA gene is located. The second part is a running number that is added to avoid identical ids. The running number is incremented by one for each potential miRNA precursor that is excised from the genome. Clicking this field will display a pdf of the structure, read signature and score breakdown of the reported miRNA. miRDeep2 scorethe log-odds score assigned to the hairpin by miRDeep2 estimated probability that the miRNA candidate is a true positivethe estimated probability that a predicted novel miRNA with a score of this or higher is a true positive. To see exactly how this probability is estimated, mouse over the 'novel miRNAs, true positives' in the table at the top of the webpage. rfam alertthis field indicates if the predicted miRNA hairpin has sequence similarity to reference rRNAs or tRNAs. Warnings in this field should overrule the estimated probability that a reported miRNA is a true positive (previous field). total read countthis is the sum of read counts for the predicted mature, loop and star miRNAs. mature read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted mature miRNA, including 2 nts upstream and 5 nts downstream. loop read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted miRNA loop, including 2 nts upstream and 5 nts downstream. star read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted star miRNA, including 2 nts upstream and 5 nts downstream. significant randfold p-valuethis field indicates if the estimated randfold p-value of the excised potential miRNA hairpin is equal to or lower than 0.05 (see Bonnet et al., Bioinformatics, 2004). miRBase miRNAthis field displays the ids of any reference mature miRNAs for the species that map perfectly (full length, no mismatches) to the reported miRNA hairpin. If this is the case, the reported miRNA hairpin is assigned as a known miRNA. If not, it is assigned as a novel miRNA. If more than one reference mature miRNA maps to the miRNA hairpin, then only the id of the reference miRBase miRNA that matches the predicted mature sequence is output. example miRBase miRNA with the same seedthis field displays the ids of any reference mature miRNAs from related species that have a seed sequence identical to that of the reported mature miRNA. The seed is here defined as nucleotides 2-8 from the 5' end of the mature miRNA. If more than one reference mature miRNA have identical seed, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs from related species is displayed. UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the consensus precursor sequence against the reference genome. NCBI blastnclicking this field will initiate a NCBI blastn search of the consensus precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences). consensus mature sequencethis is the consensus mature miRNA sequence as inferred from the deep sequencing reads. consensus star sequencethis is the consensus star miRNA sequence as inferred from the deep sequencing reads. consensus precursor sequencethis is the consensus precursor miRNA sequence as inferred from the deep sequencing reads. Note that this is the inferred Drosha hairpin product, and therefore does not include substantial flanking genomic sequence as does most miRBase precursors. precursor coordinateThe given precursor coordinates refer do absolute position in the mapped reference sequence
RSI_126_13095 7.5e+6 14824476 14818169 0 6307 yes blast uauugcacuugucccggccugu agguugggaucgguugcaaugcu agguugggaucgguugcaaugcuguguuucuguaugguauugcacuugucccggccugu NW_017739045.1:1327326..1327385:+
RSI_742_33079 6.8e+6 13393638 13393557 0 81 yes blast uauugcacuugucccggccugu ggguggggauuuguugcauuacu ggguggggauuuguugcauuacuuguauuauacauaaaguauugcacuugucccggccugu NW_017739661.1:857004..857065:+
RSI_60_7308 5.6e+6 11009141 10695311 0 313830 yes blast aacauucaacgcugucggugagu accaccgaccguugacuguacc aacauucaacgcugucggugaguuugggauuugaaaaaaccaccgaccguugacuguacc NW_017738979.1:1513580..1513640:+
RSI_325_23483 5.4e+6 10695984 10695872 0 112 yes blast aacauucaacgcugucggugagu accaucgaccguugauuguacc aacauucaacgcugucggugaguuuggaauuaaagucaaaaccaucgaccguugauuguacc NW_017739244.1:1035351..1035413:-
RSI_535_29395 1.5e+6 3123390 3123251 1 138 yes blast ugagguaguagguuguauaguu cuauacaaucuacugucuuucc ugagguaguagguuguauaguuuuagggucacacccaccacugggagauaacuauacaaucuacugucuuucc NW_017739454.1:86967..87040:-
RSI_148_14524 1.5e+6 3122305 3122126 0 179 yes blast ugagguaguagguuguauaguu cuauacaaucuacugucuuucc ugagguaguagguuguauaguuuggggcucugcccugcuaugggauaacuauacaaucuacugucuuucc NW_017739067.1:1376216..1376286:+
RSI_288_22135 6.2e+5 1231583 1205396 0 26187 yes blast uguaaacauccucgacuggaagcu cuuucagucggauguuugcagc uguaaacauccucgacuggaagcugugaagccgcagaugggcuuucagucggauguuugcagc NW_017739207.1:3271947..3272010:-
RSI_348_24311 6.2e+5 1223986 1199291 26 24669 yes blast cacuagauugugagcuccugga aaggagcucacagucuauugag aaggagcucacagucuauugaguugcccuucugacuuccccacuagauugugagcuccugga NW_017739267.1:1541482..1541544:+
RSI_151_14774 6.2e+5 1219857 769719 0 450138 yes blast agcucggucugaggccccucagu ugaggggcagagagcgagacuuu ugaggggcagagagcgagacuuuucuauuuuccaaaagcucggucugaggccccucagu NW_017739070.1:1141058..1141117:-
RSI_816_33751 5.6e+5 1113299 1107061 0 6238 yes blast ucccugagacccuuuaaccuguga acaggugagguucuugggagc ucccugagacccuuuaaccugugagcacguccagggucacaggugagguucuugggagc NW_017739735.1:336744..336803:-
RSI_148_14526 4.5e+5 890133 883796 7 6330 yes blast ugagguaguagguugugugguu cuauacaaccuacugccuuccc ugagguaguagguugugugguuucagggcagugauguugcccccucagaagauaacuauacaaccuacugccuuccc NW_017739067.1:1377199..1377276:+
RSI_535_29369 4.4e+5 872145 862656 100 9389 yes blast uucacaguggcuaaguucug agagcuuagcugauuggugaac agagcuuagcugauuggugaacagugacugguuuccgcuuuguucacaguggcuaaguucug NW_017739454.1:1468947..1469009:+
RSI_91_10024 4.3e+5 846260 844535 18 1707 yes blast ugagguaguaguuugugcuguu cugcgcaagcuacugccuug ugagguaguaguuugugcuguuggucggguugugacauugcccgcuguggagauaacugcgcaagcuacugccuug NW_017739010.1:1744290..1744366:+
RSI_424_26617 3.9e+5 775048 774257 0 791 yes blast aagcugccaguugaagaacugu aguucuucaguggcaagcuuu aguucuucaguggcaagcuuuauguccugacccagcuaaagcugccaguugaagaacugu NW_017739343.1:996451..996511:+
RSI_35_4160 3.2e+5 631622 629435 0 2187 yes blast caacggaaucccaaaagcagcug cugcgcuuggauuucguuccc caacggaaucccaaaagcagcuguugucuccagagcauuccagcugcgcuuggauuucguuccc NW_017738954.1:2019188..2019252:+
RSI_162_15585 3.0e+5 601946 600186 113 1647 yes blast uacccuguagauccgaauuugu caaauucguaucuaggggaau uacccuguagauccgaauuuguguaaggaauuuuguggucacaaauucguaucuaggggaau NW_017739081.1:1381501..1381563:-
RSI_52_6637 2.6e+5 528884 528768 0 116 yes blast uucaaguaauccaggauaggcu ccuauucuugguuacuugcacg uucaaguaauccaggauaggcugugcaggucccaaguggccuauucuugguuacuugcacg NW_017738971.1:3314373..3314434:-
RSI_149_14574 2.1e+5 413793 413593 0 200 yes blast uacccuguagaaccgaauuugu agauucgauucuaggggaaua uacccuguagaaccgaauuugugugguauccacauagucacagauucgauucuaggggaaua NW_017739068.1:194953..195015:+
RSI_180_16660 2.0e+5 403220 402724 0 496 yes blast uccuguacugagcugccccgag cggggcagcucaguacaggau uccuguacugagcugccccgaggcucuucacggugcccggcucggggcagcucaguacaggau NW_017739099.1:2836770..2836833:+
RSI_180_16695 2.0e+5 402270 402006 0 264 yes blast uccuguacugagcugccccgag cggggcagcucaguacaggau uccuguacugagcugccccgagccgggcaccgugaagagccucggggcagcucaguacaggau NW_017739099.1:2836769..2836832:-
RSI_4_561 1.6e+5 332004 328518 0 3486 yes blast uguaaacauccccgacuggaagcu cuuucagucagauguuugcugc uguaaacauccccgacuggaagcuguaagacauggcuaagcuuucagucagauguuugcugc NW_017738923.1:12075568..12075630:-
RSI_120_12570 1.5e+5 306421 286146 0 20275 yes blast uagcuuaucagacugauguugacu caacagcagucgaugggcugu uagcuuaucagacugauguugacuguugaaucucauggcaacagcagucgaugggcugu NW_017739039.1:2932905..2932964:+
RSI_288_22131 1.5e+5 303582 281203 0 22379 yes blast uguaaacauccuacacucucagcu cugggagaaggcuguuuacucu uguaaacauccuacacucucagcugugcaaagugagaaagcugggagaaggcuguuuacucu NW_017739207.1:3247853..3247915:-
RSI_816_33755 1.1e+5 227698 216275 0 11423 no blast cacccguagaaccgaccuugcg caagcucgugucuguggguccg cacccguagaaccgaccuugcggggccuucgccgcacacaagcucgugucuguggguccg NW_017739735.1:337385..337445:-
RSI_901_34296 1.0e+5 205288 205269 8 11 yes blast ugagguaguagauuguauaguu cuauacagucuacugucuuucc ugagguaguagauuguauaguuuuagggucauaccccaucuuggagauaacuauacagucuacugucuuucc NW_017739820.1:205331..205403:+
RSI_535_29393 1.0e+5 202188 202131 0 57 yes blast ugagguaguagauuguauaguu cuauacaaucuauugccuuccc ugagguaguagauuguauaguugugggguagugauuuuacccuguucaggagauaacuauacaaucuauugccuuccc NW_017739454.1:86587..86665:-
RSI_816_33753 9.5e+4 186446 185304 33 1109 yes blast ugagguaggagguuguauaguu cuauacggccuccuagcuuucc ugagguaggagguuguauaguugaggaggacacccaaggagaucacuauacggccuccuagcuuucc NW_017739735.1:337200..337267:-
RSI_85_9657 8.6e+4 169400 169306 0 94 yes blast uagcagcacguaaauauuggcg accaauauuauugugcugcuuu uagcagcacguaaauauuggcguagugaaauaaauauuaaacaccaauauuauugugcugcuuu NW_017739004.1:767605..767669:-
RSI_260_20872 8.6e+4 169224 169216 0 8 yes blast uagcagcacguaaauauuggcg ccaguauuaacugugcugcugaa uagcagcacguaaauauuggcguuaagauucuaaaauuaucuccaguauuaacugugcugcugaa NW_017739179.1:1354462..1354527:+
RSI_85_9614 7.8e+4 153404 153306 6 92 yes blast ugagguaguagguuguaugguu cuguacaaccuucuagcuuucc ugagguaguagguuguaugguuuagaguuacacccugggaguuaacuguacaaccuucuagcuuucc NW_017739004.1:8039562..8039629:+
RSI_104_11303 6.8e+4 133493 133214 0 279 yes blast acuggacuuggagucagaaggc cuccugacuccagguccugugu cuccugacuccagguccuguguguuaccucgaaauagcacuggacuuggagucagaaggc NW_017739023.1:1102052..1102112:+
RSI_23335_35971 6.7e+4 132459 69439 0 63020 yes blast ucgaggagcucacagucuagu cuagacugaagcuccuugagga ucgaggagcucacagucuaguaugucuccuccccuacuagacugaagcuccuugagga NW_017762254.1:300..358:-
RSI_790_33503 6.6e+4 129576 129529 0 47 yes blast agcuacaucuggcuacugggucuc ggcucaguagccaguguagauc ggcucaguagccaguguagauccuguguuuuguaaucaguagcuacaucuggcuacugggucuc NW_017739709.1:223378..223442:+
RSI_764_33284 6.2e+4 122615 107741 1 14873 no blast cauugcacuugucucggucuga aggcggagacuugggcaauugcu aggcggagacuugggcaauugcuggacgcugcccugggcauugcacuugucucggucuga NW_017739683.1:251664..251724:-
RSI_26_3256 5.8e+4 115311 115307 0 4 yes blast aaaagcuggguugagagggcga gccuucucuucccgguucuucccg gccuucucuucccgguucuucccggagucgggaaaagcuggguugagagggcga NW_017738945.1:118760..118814:-
RSI_43_5633 5.0e+4 99786 99687 0 99 yes blast uagguaguuuccuguuguuggg ucgacagcacgacacugccuuc uagguaguuuccuguuguugggauccaccuuucucucgacagcacgacacugccuuc NW_017738962.1:2328624..2328681:-
RSI_37_4487 4.5e+4 89869 89798 0 71 yes blast uagguaguuucauguuguuggg ucggcaacaagaaacugccuga uagguaguuucauguuguugggauugaguuuugaacucggcaacaagaaacugccuga NW_017738956.1:873267..873325:-
RSI_742_33059 4.5e+4 89645 88752 0 893 yes blast caaaacgugaggcgcugcuau cagcagcaauucauguuuugaa cagcagcaauucauguuuugaagugcuuuaaaagguucaaaacgugaggcgcugcuau NW_017739661.1:550168..550226:+
RSI_85_9616 4.3e+4 84597 45315 0 39282 yes blast ucccugagacccuaacuuguga acaagucaggcucuugggaccu ucccugagacccuaacuugugagguauuuuaguaacaucacaagucaggcucuugggaccu NW_017739004.1:8085840..8085901:+
RSI_125_13020 4.3e+4 84474 78788 87 5599 yes blast uguaaacauccuugacuggaagcu cuuucagucggauguuuacagc uguaaacauccuugacuggaagcuguaagguguucagaggagcuuucagucggauguuuacagc NW_017739044.1:628989..629053:+
RSI_536_29478 4.2e+4 83734 77674 1 6059 yes blast uaauacugccugguaaugaugac caucuuacugggcagcauugga caucuuacugggcagcauuggauggugucuggucucuaauacugccugguaaugaugac NW_017739455.1:962278..962337:-
RSI_162_15595 3.5e+4 70312 70218 0 94 yes blast uagguaguuucauguuguuggg caacgacauuaaaccacccga uagguaguuucauguuguugggccuggauuucugaacacaacgacauuaaaccacccga NW_017739081.1:1433499..1433558:-
RSI_233_19409 2.9e+4 58117 58101 0 16 yes blast aacauucauuguugucgguggg ccaccgagggaugaaugucac aacauucauuguugucgguggguugugaggacggaggccagacccaccgagggaugaaugucac NW_017739152.1:541591..541655:-
RSI_177_16434 2.7e+4 53783 53073 0 710 yes blast uucaaguaauucaggauagguu ccuguucuccauuacuuggcuc uucaaguaauucaggauagguugugugccauccagccuguucuccauuacuuggcuc NW_017739096.1:190582..190639:+
RSI_85_9659 2.7e+4 53148 52185 0 963 yes blast uagcagcacaucaugguuuaca cgaaucauuauuugcugcucu uagcagcacaucaugguuuacacacuacagucaagaugcgaaucauuauuugcugcucu NW_017739004.1:767755..767814:-
RSI_810_33706 2.5e+4 50709 45525 0 5184 yes blast ucccugagacccuaacuuguga acggguuaggcucuugggag ucccugagacccuaacuugugauguuuaccguuuaaauccacggguuaggcucuugggag NW_017739729.1:529221..529281:+
RSI_36_4290 2.5e+4 49220 49167 8 45 yes blast ugagguaguaguuuguacaguu cuguacaggccacugccuugcc ugagguaguaguuuguacaguuugagggucuaugauaccacccgguacaggagauaacuguacaggccacugccuugcc NW_017738955.1:5930468..5930547:+
RSI_764_33285 2.4e+4 48904 48224 0 680 yes blast caaagugcuguucgugcagguag acugcugagcuagcacuucccga caaagugcuguucgugcagguagugugauuaccugaccuacugcugagcuagcacuucccga NW_017739683.1:251869..251931:-
RSI_535_29392 2.4e+4 48790 31435 15 17340 yes blast cuauacgaccugcugccuuucu agagguaguagguugcauaguu agagguaguagguugcauaguuuuagggcagggauuuugcccacaaggagguaacuauacgaccugcugccuuucu NW_017739454.1:84019..84095:-
RSI_790_33505 2.4e+4 47153 45507 0 1646 yes blast agcuacauugucugcuggguuu accuggcauacaauguagauuucugu accuggcauacaauguagauuucuguguuuguuaggcaacagcuacauugucugcuggguuu NW_017739709.1:224077..224139:+
RSI_233_19377 2.0e+4 39649 39220 46 383 yes blast uucacaguggcuaaguuccg agggcuuagcugcuugugagca agggcuuagcugcuugugagcagggucugcuccaagucauguucacaguggcuaaguuccg NW_017739152.1:566698..566759:+
RSI_21_2536 1.8e+4 36653 36647 1 5 yes blast uuuggcaaugguagaacucacacu gugguucuagacuugccaacu uuuggcaaugguagaacucacacuggugagguaaugggauccggugguucuagacuugccaacu NW_017738940.1:7294200..7294264:+
RSI_535_29367 1.8e+4 36248 36122 0 126 yes blast aucacauugccagggauuaccacg ggguuccuggcaugcugauuu ggguuccuggcaugcugauuugugacuuaagauaaaaucacauugccagggauuaccacg NW_017739454.1:1468721..1468781:+
RSI_87_9836 1.7e+4 35136 33705 0 1431 yes blast gccccugggccuauccuagaa ucuagguauggucccagggau ucuagguauggucccagggaucccagaucaaaccaggccccugggccuauccuagaa NW_017739006.1:6053930..6053987:-
RSI_24_2821 1.4e+4 29106 28969 7 130 yes blast accacaggguagaaccacggac cagugguuuuacccuaugguagg cagugguuuuacccuaugguagguuacgucaugcuguucuaccacaggguagaaccacggac NW_017738943.1:9644014..9644076:+
RSI_78_8969 1.4e+4 27737 20944 0 6793 yes blast ucacagugaaccggucucuuu cggggccguagcacugucugaga cggggccguagcacugucugagagguuuacauuucucacagugaaccggucucuuu NW_017738997.1:3379997..3380053:+
RSI_37_4479 1.3e+4 27385 24104 14 3267 yes blast uccgagccugggucucucucu ggggguccccggugcucggau ggggguccccggugcucggaucucgagggugcuuauuguucgguccgagccugggucucucucu NW_017738956.1:831793..831857:-
RSI_651_31753 1.2e+4 24402 24332 17 53 yes blast cagugcaauguuaaaagggca gcucuuuucacauugugcuacu gcucuuuucacauugugcuacugucugcaccuaccacuagcagugcaauguuaaaagggca NW_017739570.1:183072..183133:+
RSI_764_33288 1.0e+4 21035 19049 0 1986 yes blast ccgcacuguggguacuugcu uaaagugcugacagugcagau uaaagugcugacagugcagauagugguccucuccgugcuaccgcacuguggguacuugcu NW_017739683.1:252091..252151:-
RSI_233_19411 1.0e+4 21010 18901 0 2109 yes blast aacauucaaccugucggugaguu accaucgaccguugaguggacc aacauucaaccugucggugaguuugggcagcucaggcaaaccaucgaccguugaguggacc NW_017739152.1:541755..541816:-
RSI_742_33061 1.0e+4 20018 17696 0 2322 yes blast gaguauuguuucugcugcccgg uagcagcgggaacacuacug uagcagcgggaacacuacugcagugagugaucggugcucuggaguauuguuucugcugcccgg NW_017739661.1:550487..550550:+
RSI_52_6652 9.8e+3 19331 19322 0 9 no blast ucacagugaaccggucucuuu gggggccgaugcacuguacgaga gggggccgaugcacuguacgagagugaguagcaggucucacagugaaccggucucuuu NW_017738971.1:4845107..4845165:-
RSI_255_20524 8.2e+3 16266 14701 0 1565 yes blast ucccuguccuccaggagcuc agcuccucgaggccagagccc ucccuguccuccaggagcucacuuacaucaggccgugagcuccucgaggccagagccc NW_017739174.1:780002..780060:+
RSI_148_14546 7.4e+3 14564 14563 0 1 yes blast acgcccuucccccccuucuuca aggagggaggagaugggc aggagggaggagaugggccaaguucccucugccuggaacgcccuucccccccuucuuca NW_017739067.1:670782..670841:-
RSI_21_2517 7.2e+3 14257 14226 0 31 yes blast uagcaccaucugaaaucgguua acugauuucuuuugguguucag acugauuucuuuugguguucagagucaauacaauuuucuagcaccaucugaaaucgguua NW_017738940.1:6517460..6517520:+
RSI_589_30360 6.4e+3 12726 12430 0 296 yes blast cacuccucuccucccgucuucu aggacgggaggaaaggaggg aggacgggaggaaaggagggcgugguuucuugcagguccucacuccucuccucccgucuucu NW_017739508.1:2601..2663:-
RSI_35_4255 6.3e+3 12460 12362 0 98 yes blast agcugguguugugaaucaggccg gcuacuucacaacaccagggu agcugguguugugaaucaggccguagccaaucagaaaacggcuacuucacaacaccagggu NW_017738954.1:5119420..5119481:-
RSI_24_2736 6.2e+3 12265 12256 5 4 yes blast agcugguguugugaaucaggccg gcuauuucacgacaccaggguu agcugguguugugaaucaggccgacgagcagugcauccucuuacccggcuauuucacgacaccaggguu NW_017738943.1:505154..505223:+
RSI_178_16584 6.2e+3 12196 7157 0 5039 yes blast cacgcucaugcacacacccaca ugagugugugugugugagugu ugagugugugugugugagugugugucgcuccggguccacgcucaugcacacacccaca NW_017739097.1:4587358..4587416:-
RSI_170_16073 5.9e+3 11597 11591 0 6 yes blast uuugguccccuucaaccagcugu agcugguaaaauggaaccaaau agcugguaaaauggaaccaaaucgccucuucaauggauuugguccccuucaaccagcugu NW_017739089.1:8203066..8203126:+
RSI_374_25166 5.9e+3 11597 11591 0 6 yes blast uuugguccccuucaaccagcugu agcugguaaaauggaaccaaau agcugguaaaauggaaccaaaucaacuguucaauggauuugguccccuucaaccagcugu NW_017739293.1:1026324..1026384:-
RSI_484_28145 5.8e+3 11532 6479 0 5053 no blast acucuuucccuguugcacuacu cagugcaaugaugaaagggca acucuuucccuguugcacuacugugggccgcugggaggcagugcaaugaugaaagggca NW_017739403.1:395315..395374:-
RSI_724_32811 4.9e+3 9678 9659 0 19 yes blast agagguaaaaauuugauuugacu agcaaaucauuuuuuacucucca agagguaaaaauuugauuugacuaguucuuaaacacaucuagcaaaucauuuuuuacucucca NW_017739643.1:1227224..1227287:-
RSI_334_23829 4.8e+3 9572 7342 1 2229 yes blast ucucacacagaaaucgcacccguc ggggugcuaucugugauugagggac ggggugcuaucugugauugagggacauggcaaauagaauugucucacacagaaaucgcacccguc NW_017739253.1:2068818..2068883:+
RSI_233_19375 4.8e+3 9512 9255 0 257 no blast aucacauugccagggauuucca gggguuccuggggaugggauuu gggguuccuggggaugggauuugcugccugucacaaaucacauugccagggauuucca NW_017739152.1:566532..566590:+
RSI_126_13086 4.7e+3 9384 8152 0 1232 yes blast caaagugcuuacagugcagguag acugcagugaaggcacuugua caaagugcuuacagugcagguagugauaugugcaucuacugcagugaaggcacuugua NW_017739045.1:1326626..1326684:+
RSI_626_31346 4.3e+3 8562 3865 0 4697 no blast agccacugcccaccgcacacug cugugcgugugacagcggcuga agccacugcccaccgcacacugcgcugcuucggacccacugugcgugugacagcggcuga NW_017739545.1:426642..426702:+
RSI_557_29855 4.1e+3 8113 7169 0 944 yes blast uccgguucucagggcuccacc aggaagcccuggaggggcuggagg aggaagcccuggaggggcuggaggugauggauguguuccuccgguucucagggcuccacc NW_017739476.1:313342..313402:+
RSI_871_34111 4.1e+3 8081 7533 0 548 yes blast augcaccugggcaaggauuccga uaauccuugcuaccugggugagagu uaauccuugcuaccugggugagagugcugucggaaugcaaugcaccugggcaaggauuccga NW_017739790.1:313385..313447:+
RSI_434_26946 3.8e+3 7571 6733 8 830 no blast ccaccuccccugcaaacgucca gacguuggcucugguggugau ccaccuccccugcaaacguccagugaugcagagguaauggacguuggcucugguggugau NW_017739353.1:564432..564492:+
RSI_527_29232 3.8e+3 7566 7377 133 56 no blast ucuggcuccgugucuucacuccc gagggagggacgggggcugugc ucuggcuccgugucuucacucccguguguguccgaggagggagggagggacgggggcugugc NW_017739446.1:1207337..1207399:+
RSI_901_34298 3.7e+3 7425 7415 0 10 yes blast ugagguaguaaguuguauuguu cuauacaacuuacuacuuuccc ugagguaguaaguuguauuguugugggguagggauuuuaggccccaauuagaagauaacuauacaacuuacuacuuuccc NW_017739820.1:206201..206281:+
RSI_4_559 3.4e+3 6831 6407 0 424 yes blast uguaaacauccuacacucagcu cugggagguggauguuuacuuc uguaaacauccuacacucagcuguaauauguggauuggcugggagguggauguuuacuuc NW_017738923.1:12071164..12071224:-
RSI_741_33050 3.2e+3 6457 4485 0 1972 yes blast ucccccaggugugauucugauuug uuaucagaaucuccagggguac uuaucagaaucuccagggguacuuauaauuugaaaaagucccccaggugugauucugauuug NW_017739660.1:672298..672360:-
RSI_43_5610 3.2e+3 6442 5864 0 578 yes blast ucagugcacuacagaacuuugu aaaguucugagacacuccgacu aaaguucugagacacuccgacucuguauaugauagaagucagugcacuacagaacuuugu NW_017738962.1:1387703..1387763:-
RSI_85_9612 2.9e+3 5874 5061 0 813 yes blast aacccguagauccgaucuugug caagcucgcuucuaugggucugu aacccguagauccgaucuuguggugaaguggaccgcacaagcucgcuucuaugggucugu NW_017739004.1:8038830..8038890:+
RSI_38_4624 2.8e+3 5593 5490 0 103 yes blast ugagaacugaauuccauaggcugu ugcccuagggacucaguucug ugagaacugaauuccauaggcugugagcucuagcacaugcccuagggacucaguucug NW_017738957.1:5508643..5508701:+
RSI_21_2532 2.8e+3 5538 5343 1 194 yes blast uauggcacugguagaauucacug ugaauuaccgaagggccauaaa uauggcacugguagaauucacugugaacagucucggucagugaauuaccgaagggccauaaa NW_017738940.1:7289911..7289973:+
RSI_314_23086 2.6e+3 5163 5003 0 160 yes blast gucaacacuugcugguuuccucu gggagccaggaaguauugauguu gggagccaggaaguauugauguuucugccaguuuagcgucaacacuugcugguuuccucu NW_017739233.1:2569464..2569524:-
RSI_871_34105 2.5e+3 5062 4124 0 938 yes blast ccucccacacccaaggcuugca caugccuugaguguaggaccgu caugccuugaguguaggaccguuggcaucuuaauuacccucccacacccaaggcuugca NW_017739790.1:308182..308241:+
RSI_126_13087 2.3e+3 4710 4487 0 223 no blast acugcccuaagugcuccuucug uaaggugcaucuagugcagauag uaaggugcaucuagugcagauagugaaguagauuagcaucuacugcccuaagugcuccuucug NW_017739045.1:1326762..1326825:+
RSI_639_31578 2.2e+3 4371 4370 0 1 yes blast aggcaagaugcuggcauagcug ugcuaugccaacauauugccauc aggcaagaugcuggcauagcuguugaacugagaaccugcuaugccaacauauugccauc NW_017739558.1:847831..847890:+
RSI_321_23376 2.1e+3 4144 2986 0 1158 yes blast uaaugccccuaaaaauccuuau agggacuuucaggggcagcugug agggacuuucaggggcagcuguguuuucugacucagucauaaugccccuaaaaauccuuau NW_017739240.1:660240..660301:-
RSI_321_23377 1.9e+3 3787 3266 0 521 yes blast ugggucuuugcgggcgagauga aacuggccuacaaagucccagu ugggucuuugcgggcgagaugagggugucgguucaacuggccuacaaagucccagu NW_017739240.1:672780..672836:-
RSI_251_20378 1.8e+3 3605 3592 0 13 no blast acccgucccgugcguccccggac cgggaacgucgagacuggagc acccgucccgugcguccccggacguugcucucugccccgggaacgucgagacuggagc NW_017739170.1:2839162..2839220:+
RSI_220_18697 1.6e+3 3267 2934 26 307 no blast ccacugccccaggugcugcug cgcauccccuagggcauuggugu cgcauccccuagggcauugguguaaagcuggagacccacugccccaggugcugcug NW_017739139.1:1335606..1335662:+
RSI_536_29476 1.4e+3 2799 2416 1 382 yes blast uaacacugucugguaacgauguu caucuuaccggacagugcugga caucuuaccggacagugcuggauuucucggcucgacucuaacacugucugguaacgauguu NW_017739455.1:961695..961756:-
RSI_126_13092 1.1e+3 2155 2146 0 9 yes blast uaaagugcuuauagugcagguag acugcauuaugagcacuuaaagu uaaagugcuuauagugcagguaguguuuaguuaucuacugcauuaugagcacuuaaagu NW_017739045.1:1327074..1327133:+
RSI_689_32296 9.7e+2 1903 1830 0 73 yes blast cuuggcaccuaguaagcacuca agugccugcuaugugccagg cuuggcaccuaguaagcacucaguaaauacuugaugagugccugcuaugugccagg NW_017739608.1:65472..65528:+
RSI_368_24990 7.7e+2 1562 1554 0 8 no blast gaagauuagcauggccccug aggaugacacgcaaauuc gaagauuagcauggccccugcgccaggaugacacgcaaauuc NW_017739287.1:1475842..1475884:-
RSI_495_28392 7.4e+2 1463 1381 0 82 yes blast aacuggcccacaaagucccgcu cgggguuuugagggcgagauga cgggguuuugagggcgagaugaguuuauguuuuauccaacuggcccacaaagucccgcu NW_017739414.1:999180..999239:-
RSI_106_11442 7.2e+2 1437 1433 0 4 no blast cacuagacugugagcuccuggg agccaacaucaggucug cacuagacugugagcuccugggggugcagggacuguuuccuacucauuuuggucuuuagcuccuagccaacaucaggucug NW_017739025.1:129925..130006:+
RSI_8_1024 6.1e+2 1206 1204 0 2 yes blast guacaguacugugauaacugaa cgguuaucaugguaccgaugcug cgguuaucaugguaccgaugcuguauaucugaaagguacaguacugugauaacugaa NW_017738927.1:235446..235503:-
RSI_9_1144 6.0e+2 1192 1191 0 1 yes blast guacaguacugugauaacugaa caguuaucacagugcugaugc caguuaucacagugcugaugcuguccauucuaaagguacaguacugugauaacugaa NW_017738928.1:3829554..3829611:-
RSI_424_26609 5.8e+2 1148 1088 1 59 yes blast uaacagucuacagccauggucg accguggcuuucgauuguuacu accguggcuuucgauuguuacugugggaaccgaagguaacagucuacagccauggucg NW_017739343.1:762342..762400:+
RSI_434_26941 5.5e+2 1085 921 0 164 yes blast aggggcuggcuuuccucuggu uggagagaaaggcaguuccuga uggagagaaaggcaguuccugaugguccccuccccaggggcuggcuuuccucuggu NW_017739353.1:525620..525676:+
RSI_126_13093 5.4e+2 1057 1048 0 9 yes blast ugugcaaauccaugcaaaacuga aguuuugcagguuugcauccagc aguuuugcagguuugcauccagcugugugauauucugcugugcaaauccaugcaaaacuga NW_017739045.1:1327209..1327270:+
RSI_46_5766 5.1e+2 1009 725 0 284 yes blast aaggagcuuacaaucuagcuggg caacuagacugugagcuucuaga aaggagcuuacaaucuagcuggggguaaaugacuugcacaugaacgcaacuagacugugagcuucuaga NW_017738965.1:495717..495786:+
RSI_2_140 4.9e+2 973 972 0 1 yes blast uguaacagcaacuccaugugga ccaguggagauguuguuacuu uguaacagcaacuccauguggacugugugccaauuuccaguggagauguuguuacuu NW_017738921.1:1287010..1287067:+
RSI_133_13552 4.1e+2 819 767 0 52 yes blast uguaacagcaacuccaugugga ccaguggggcugcuguuaucugg uguaacagcaacuccauguggaaguacccacuaguuccaguggggcugcuguuaucugg NW_017739052.1:2074289..2074348:+
RSI_408_26146 4.1e+2 802 472 0 330 yes blast ucucugggccugugucuuaggcu caaagcacacggccugcagagagg ucucugggccugugucuuaggcucugcaagaucaaccgagcaaagcacacggccugcagagagg NW_017739327.1:312212..312276:+
RSI_453_27448 3.8e+2 752 277 0 475 yes blast cauuauuacuuuugguacgcg ucguaccgugaguaauaaugcg cauuauuacuuuugguacgcgcugugacacuucaaacucguaccgugaguaauaaugcg NW_017739372.1:356392..356451:-
RSI_286_21991 3.4e+2 rRNA 673 625 0 48 no blast ccugguuaguacuuggaug cucggaagcuaagcagggu cucggaagcuaagcaggguugggccugguuaguacuuggaug NW_017739205.1:988614..988656:+
RSI_88_9881 3.1e+2 615 571 0 44 yes blast ucuaguaagaguggcaguugaag augcugacauauuuacuagagg augcugacauauuuacuagaggguaaaauuaauaaccuucuaguaagaguggcaguugaag NW_017739007.1:3833556..3833617:+
RSI_142_14210 2.7e+2 528 527 0 1 yes blast agaguugagucuggacgucccg ugauuguccaaacgcaauucucga ugauuguccaaacgcaauucucgagucucuggccucggccgagaguugagucuggacgucccg NW_017739061.1:3460250..3460313:-
RSI_554_29840 2.6e+2 533 532 0 1 no blast uugcagcugccugggagugauuuc cggucacucugggcacc cggucacucugggcaccgcagcacugugcuggggauguugcagcugccugggagugauuuc NW_017739473.1:1009786..1009847:-
RSI_871_34118 2.5e+2 499 488 0 11 yes blast uacccauugcauaucggagcug accuccugugugcauggauuaca uacccauugcauaucggagcugugaauucucaaagcaccuccugugugcauggauuaca NW_017739790.1:317245..317304:+
RSI_208_18171 2.4e+2 483 463 0 20 yes blast uugugcuugaucuaaccaugug caugguuccgucaagcacca uugugcuugaucuaaccaugugguugccagguaugaguaaaacaugguuccgucaagcacca NW_017739127.1:5452910..5452972:-
RSI_1_107 2.3e+2 461 424 0 37 no blast cauggaggucucugucuggcu ucugaucguuccccuccauaca cauggaggucucugucuggcuuaggacagcugacuaagucugaucguuccccuccauaca NW_017738920.1:3085674..3085734:-
RSI_21_2516 2.2e+2 441 381 4 56 yes blast gcugguuucauauggugguuuaga uagcaccauuugaaaucaguguu gcugguuucauauggugguuuagauuuaaauagugauugucuagcaccauuugaaaucaguguu NW_017738940.1:6517058..6517122:+
RSI_286_21978 2.2e+2 431 429 0 2 yes blast ucuccgccaccuccaccucggc ccggcggcguuggcggg ucuccgccaccuccaccucggccugaccccaggccggcggcguuggcggg NW_017739205.1:442871..442921:+
RSI_594_30476 2.1e+2 423 318 0 105 yes blast accgauuucuccugguguucaga uagcaccauuugaaaucgguua accgauuucuccugguguucagagucuguuuuugucuagcaccauuugaaaucgguua NW_017739513.1:1439777..1439835:+
RSI_77_8927 2.1e+2 431 421 0 10 no blast cugucaccccauugaucgccagg ggcugaucuggcuggcu cugucaccccauugaucgccaggcuugauuuggcugaucuggcuggcu NW_017738996.1:2990929..2990977:-
RSI_871_34108 2.0e+2 407 382 21 4 yes blast caucccuugcaugguggagggu cucccacaugcaggguuugca caucccuugcaugguggagggugcgcuugcugaaaaccccucccacaugcaggguuugca NW_017739790.1:308570..308630:+
RSI_211_18340 2.0e+2 401 372 0 29 yes blast ucuacagugcacgugucuccagu ggagacgcggcccuguuggagu ucuacagugcacgugucuccaguguggcucagagacuggagacgcggcccuguuggagu NW_017739130.1:1790457..1790516:+
RSI_374_25133 1.9e+2 372 365 0 7 yes blast aucucagguucgucagcccgug aggacuguccaaccugagaaug aggacuguccaaccugagaauggugucuccagggucaaucucagguucgucagcccgug NW_017739293.1:230721..230780:+
RSI_242_19820 1.7e+2 340 339 0 1 yes blast uggcagugucuuagcugguuguu aaucagcaaguauacugcccu uggcagugucuuagcugguuguugugaguaauagugaaggaagcaaucagcaaguauacugcccu NW_017739161.1:1800383..1800448:+
RSI_662_31926 1.5e+2 300 238 0 62 yes blast cagugccucggcagugcagcc gugcauugcuguugcauug gugcauugcuguugcauugcaugugugugaggcgggugcagugccucggcagugcagcc NW_017739581.1:411375..411434:-
RSI_236_19618 1.0e+2 202 196 0 6 yes blast cuuuuugcggucugggcuugc aagcccuuaccccaaaaagca cuuuuugcggucugggcuugcuguacauaacucaauagccggaagcccuuaccccaaaaagca NW_017739155.1:3133301..3133364:+
RSI_215_18435 1.0e+2 198 189 4 5 yes blast ugugugugugugugugugugu cauacacacauacacacacacauau uguguguguguguguguguguauauguguguguguguguauauauacauauauacauauauacacauacacacauacacacacacauau NW_017739134.1:1421174..1421263:+
RSI_467_27697 1.0e+2 199 197 0 2 yes blast cuuuuugcggucugggcuugc aagcccuuaccccaaaaag cuuuuugcggucugggcuugcuguuccucucaacaguagucaggaagcccuuaccccaaaaag NW_017739386.1:62595..62658:-
RSI_306_22793 9.2e+1 179 135 0 44 yes blast uggaagacuagugauuuuguuguu caacaaaucacagucugccaua uggaagacuagugauuuuguuguuuuuagauaacuaaaucgacaacaaaucacagucugccaua NW_017739225.1:1133190..1133254:-
RSI_21_2590 6.4e+1 123 115 0 8 yes blast uuuuucauuauugcuccugacc ucaagagcaauaacgaaaaaug ucaagagcaauaacgaaaaauguuugucauaaaccguuuuucauuauugcuccugacc NW_017738940.1:6765849..6765907:-
RSI_119_12520 6.0e+1 117 77 0 40 yes blast gagacugaugaguucccggga ugaaggaacuugugagucuccu ugaaggaacuugugagucuccuauugaaaaugaacaggagacugaugaguucccggga NW_017739038.1:629103..629161:+
RSI_51_6395 5.6e+1 116 115 0 1 no blast cuccccgggcuguggccgcg gccccgccccagccccg gccccgccccagccccgccccuuccgccucuacccugugcggcuccccgggcuguggccgcg NW_017738970.1:12509585..12509647:+
RSI_251_20364 3.8e+1 83 82 0 1 no blast ugcaagcaacacucuguggcaga gacacaauuugagcuugcuaua ugcaagcaacacucuguggcagaugaucaaaacugucugacacaauuugagcuugcuaua NW_017739170.1:2274553..2274613:+
RSI_159_15388 3.4e+1 73 64 0 9 no blast cugcccuggcccgagggaccgacu cggccccacgcaccaggguaaga cggccccacgcaccaggguaagagagagucucacuuccugcccuggcccgagggaccgacu NW_017739078.1:3200941..3201002:-
RSI_949_34610 3.3e+1 62 23 0 39 yes blast uagcagcacagaaauauuggca ccaauauuggcugagcugcuccag uagcagcacagaaauauuggcacugggaagaaagucugccaauauuggcugagcugcuccag NW_017739868.1:46357..46419:+
RSI_722_32759 3.3e+1 63 41 1 21 yes blast uuauaaagcaaugagacugauu uccgucucaguuacuuuauagcc uuauaaagcaaugagacugauugucaugugucgugugugggauccgucucaguuacuuuauagcc NW_017739641.1:603398..603463:-
RSI_219_18624 3.2e+1 60 58 0 2 yes blast acaguagucugcacauugguu cccaguguucagacuaccuguuc cccaguguucagacuaccuguucagggggcucugaauguguacaguagucugcacauugguu NW_017739138.1:737233..737295:-
RSI_1_80 3.2e+1 60 58 0 2 yes blast acaguagucugcacauugguu cccaguguucagacuaccuguuc cccaguguucagacuaccuguucaggaaaaugccguuguacaguagucugcacauugguu NW_017738920.1:878642..878702:-
RSI_484_28125 2.8e+1 52 51 0 1 yes blast acgggcugcccucuccccacc ggggugggggcugcagc ggggugggggcugcagcacggggcaggcgggaggugugccucacgggcugcccucuccccacc NW_017739403.1:188788..188851:+
RSI_104_11301 2.8e+1 52 51 0 1 yes blast ugagaugaagcacuguagcu ggugcagugcugcaucucugguca ggugcagugcugcaucucuggucaguugggagucugagaugaagcacuguagcu NW_017739023.1:900601..900655:+
RSI_211_18362 2.6e+1 56 45 0 11 no blast agcggacuggcagccugcuucu agccaggcggucaaugcgcug agcggacuggcagccugcuucucguugagcagagccaggcggucaaugcgcug NW_017739130.1:2199423..2199476:-
RSI_105_11408 2.3e+1 43 27 0 16 yes blast caauguuuccacagugcaucac gugcauuguaguugcauugca gugcauuguaguugcauugcacguucuagcgguacccgugcaauguuuccacagugcaucac NW_017739024.1:150274..150336:-
RSI_35_4217 2.1e+1 39 37 0 2 yes blast gaacgaaauccaagcgcagcug gcugcuuuugggauuccguugcc gaacgaaauccaagcgcagcuggaaugcucuggagacaacagcugcuuuugggauuccguugcc NW_017738954.1:2019186..2019250:-
RSI_37_4496 1.7e+1 30 29 0 1 yes blast uccgccccgucccccucccaga gucggagggugcgcgggguugaaagca gucggagggugcgcgggguugaaagcaggccgcuccgccccgucccccucccaga NW_017738956.1:1320828..1320883:-
RSI_50_6274 1.6e+1 33 32 0 1 yes blast aggaagggagagggagagag ugucuuuuuuuuuuuuu ugucuuuuuuuuuuuuuaguuuucuuuuuuguuacugcccaaagcaagggggagaagagaggaagggagagggagagag NW_017738969.1:1558214..1558293:-
RSI_930_34489 1.5e+1 29 28 0 1 yes blast uauauauauauauguacguaug uacguagauauauauguauuu uauauauauauauguacguauguguauauaaauguauacguagauauauauguauuu NW_017739849.1:73105..73162:-
RSI_16_1971 1.3e+1 23 21 0 2 yes blast uuacaguuguucaaccaguuacu uaaccaguugaacaacugaaccc uuacaguuguucaaccaguuacuaaucuaacuaauuguaaccaguugaacaacugaaccc NW_017738935.1:3739991..3740051:-
RSI_24_2835 1.1e+1 23 14 0 9 yes blast uuuccucugugaacucccacugu auuugggggccacaugggaaaga auuugggggccacaugggaaagagcuucugaacucuuuccucugugaacucccacugu NW_017738943.1:11671508..11671566:+
RSI_10_1288 1.1e+1 19 18 0 1 yes blast ucucucucucucucucucu aagggagggaggaggga aagggagggaggagggaaggaaggaagaaaauaucuauuucucucucucucucucucu NW_017738929.1:3487579..3487637:-
RSI_151_14734 1.1e+1 19 10 0 9 yes blast ugaggggccucagaccgagcuu gucucgcucucugccccucagc ugaggggccucagaccgagcuuuuggaaaauagaaaagucucgcucucugccccucagc NW_017739070.1:1141060..1141119:+
RSI_1_8 1.0e+1 18 10 0 8 yes blast uaaccaaugugcagacuacugu cagguagucugaacacuggggc uaaccaaugugcagacuacuguacaacggcauuuuccugaacagguagucugaacacuggggc NW_017738920.1:878641..878704:+
RSI_411_26248 9.4 19 13 0 6 yes blast uaauuuuauguauaagcuagu gagcuuauucauaaaaguacag gagcuuauucauaaaaguacaguauaauccaguaaaccuguaauuuuauguauaagcuagu NW_017739330.1:625607..625668:-
RSI_369_25003 8.2 20 19 0 1 no blast gcggcagcggcggcggcgc ccggccccgccgagccc ccggccccgccgagcccucgggcggcagcggcggcggcgc NW_017739288.1:191575..191615:+
RSI_350_24385 8.0 18 17 0 1 yes blast auauauguauguguguaugugu uauauauauauauauauauau auauauguauguguguauguguauauauauauauauauauauauauauauauauau NW_017739269.1:774024..774080:-
RSI_219_18600 7.7 12 10 0 2 yes blast uaaccaaugugcagacuacugu agguagucugaacacuggg uaaccaaugugcagacuacuguacacauucagagcccccugaacagguagucugaacacuggg NW_017739138.1:737232..737295:+
RSI_742_33063 5.5 9 6 0 3 yes blast ugugacagauugauaacugaaag ucggggaucaucguguca ucggggaucaucgugucacgagagaccacugugcacuugugacagauugauaacugaaag NW_017739661.1:555384..555444:+
RSI_408_26180 4.0 5 4 0 1 yes blast uggggaggcagugggaggau ccucagacuuuccccag ccucagacuuuccccagcccugugcuucggggacuucuuggggaggcagugggaggau NW_017739327.1:825536..825594:-
RSI_1837_35439 3.5 11 9 0 2 no blast uccuccugcugcucucggg gugagugcggggucggg uccuccugcugcucucggggacccugggucugacggggacccgggcgggugagugcggggucggg NW_017740756.1:3141..3206:-
RSI_69_8313 3.5 10 8 0 2 yes blast uuagcaucuggcacuauggacu caccauggacucccagauguuagcaacu caccauggacucccagauguuagcaacuagcucuauggauucccagauguuagcaucuggcacuauggacu NW_017738988.1:2180020..2180091:+
RSI_612_31171 3.1 51 51 0 0 yes blast ccggcggcggcggcggcu cccugccggagccgggu cccugccggagccgggucuagcaugugccgcggcuccccggcggcggcggcggcu NW_017739531.1:104715..104770:+
RSI_405_26060 3.1 83 83 0 0 yes blast caggcgggcgggcgggcag gcccgcccgcccgggucucugcc gcccgcccgcccgggucucugcccagcuccucccgcaggcgggcaggcgggcgggcgggcag NW_017739324.1:456754..456816:-
RSI_219_18630 3.0 42 41 0 1 yes blast gccggggccggggccgggg ucccggaccuggcccaggg ucccggaccuggcccagggccagggccggggccggggccggggccgggg NW_017739138.1:872243..872292:-
RSI_242_19856 3.0 4 3 0 1 yes blast gauuucugggccccacccaga aggggcugggccuggga gauuucugggccccacccagaccgacggaaucagcaguucaggggcugggccuggga NW_017739161.1:4181139..4181196:+
RSI_591_30404 3.0 288 285 2 1 yes blast ccgggcgggcgggcggcggg ccgcccgcccgcgccgc ccgggcgggcgggcggcgggcagccuccuccucuncccuucuucccucuccccucgcagccccugcccgcccgcccgcgccgc NW_017739510.1:250615..250698:+
RSI_136_13803 2.9 266 266 0 0 yes blast ggcgcgcggaggggcggg cgccucugaucugccug ggcgcgcggaggggcgggggucucgcgcgcgucucagccgccgcccucgccucugaucugccug NW_017739055.1:3632031..3632095:-
RSI_86_9731 2.8 327 327 0 0 yes blast gccccccgccgggcccg gugccuucagagggugggcgu gccccccgccgggcccgccccucgccaacuugggggguggugccuucagagggugggcgu NW_017739005.1:1010957..1011017:-
RSI_17300_35917 2.8 14 12 0 2 yes blast ccgcagccgccgccgccgcc ggcggcagcggugggga ccgcagccgccgccgccgcccaagggcuggcgagggaaaggcgugcgcucacagcacaggggcggcagcggugggga NW_017756219.1:491..568:-
RSI_359_24738 2.8 2045 1991 40 14 yes blast cccggccgucccggcggc gcgggugaggccgggccgggc cccggccgucccggcggccauugcuccaagauggcggcggcggcggcggcgggugaggccgggccgggc NW_017739278.1:1099312..1099381:-
RSI_236_19668 2.8 43 42 0 1 yes blast ugcccucugcccucugcccccg gagcagagguugggggcu gagcagagguugggggcuaacuaccccccugcccacuccuccugcccucugcccucugcccccg NW_017739155.1:4748146..4748210:-
RSI_386_25475 2.8 14 12 0 2 yes blast gcucggcggccgcggcgg ccucccggcugcccgccu gcucggcggccgcggcggcggcncugccucccggcugcccgccu NW_017739305.1:314185..314229:-
RSI_453_27412 2.7 84 84 0 0 yes blast gggcgggcggcggcggc ggcugcacgucugcgcgu gggcgggcggcggcggcggugcgauguucgugcaagaggagaagauuuucgcgggcaaggugcugcggcugcacgucugcgcgu NW_017739372.1:901879..901963:+
RSI_35_4206 2.7 83 82 1 0 yes blast uccagcucccggcgcugcccacu caggcagcgcagguggcugugcc caggcagcgcagguggcugugccccgcagcagcggccccgcaccggccgcucgguccagcucccggcgcugcccacu NW_017738954.1:1478124..1478201:-
RSI_192_17323 2.7 70 70 0 0 yes blast ggggucgggggcggucggg cagcggacuggcucugacuccug cagcggacuggcucugacuccugcccggggucgggggcggucggg NW_017739111.1:1844156..1844201:+
RSI_406_26098 2.7 24 24 0 0 yes blast uccgggagugagcggcugc ggccaccuccuccaggaag uccgggagugagcggcugccgcccagggggccaccauguaggcuucaguaccuggcucagggccaccuccuccaggaag NW_017739325.1:1001836..1001915:+
RSI_274_21567 2.7 24 24 0 0 yes blast cuccuccuccuccucccga ggcgggcgaggguggggggggc cuccuccuccuccucccgauuuucccuccucggcgggcgaggguggggggggc NW_017739193.1:5051296..5051349:-
RSI_958_34686 2.7 107 107 0 0 yes blast cagggcugggcugggcuggg gagucguaccuguuccugg gagucguaccuguuccugggcugcggagaugggagcagcucagcagggcugggcugggcuggg NW_017739877.1:47926..47989:-
RSI_546_29692 2.7 12892 12892 0 0 yes blast acccugcucgcugcgcca gggcggccugcggggucu acccugcucgcugcgccauuugucaugcgcggaggccuucucgccacgccauguuucagguggggcggccugcggggucu NW_017739465.1:191504..191584:+
RSI_453_27460 2.7 53 53 0 0 yes blast cgcgaaggcccgcggcggg gggcgcggggcgggugug gggcgcggggcgggugugagcgggccucucccaauggacagaggccggggggcguggccgcggcgcgaaggcccgcggcggg NW_017739372.1:1444657..1444739:-
RSI_149_14627 2.6 26 26 0 0 yes blast accggacucgccucuuccaacu gaggaagaggcggggccagucg accggacucgccucuuccaacucgaguucaauaugggaccgagaggaagaggcggggccagucg NW_017739068.1:1095301..1095365:-
RSI_814_33722 2.6 29 29 0 0 yes blast gagugugugugugugaguga ccucuaaaugcacccgagagc ccucuaaaugcacccgagagcccucuacgcagcccagguucugggcuggugugagggcgagugugugugugugaguga NW_017739733.1:53847..53925:-
RSI_121_12709 2.6 12760 12760 0 0 yes blast acccugcucgcugcgcca gggcggccugcggggucu acccugcucgcugcgccacgugucaugcggggcggccugcggggucu NW_017739040.1:421747..421794:-
RSI_59_7250 2.6 27 27 0 0 yes blast gcgaaggcggcggcggcggcu ccccccacggcacuugugc gcgaaggcggcggcggcggcucugcggggcggcugcgggacugcggcccggggcuggccacgcgcgggccccccacggcacuugugc NW_017738978.1:5284198..5284285:+
RSI_372_25097 2.6 422 413 6 3 yes blast cuccgcgccugucaaaccccucau ggggguggggggggcgc ggggguggggggggcgcggagccgggcuccgggccggccgggcuccgcgccugucaaaccccucau NW_017739291.1:614163..614229:+
RSI_168_15871 2.6 29 29 0 0 yes blast cugccugucugugccugcugu agccggcacugagggcaggu cugccugucugugccugcugucaggccuggcccaggcugagccggcacugagggcaggu NW_017739087.1:420344..420403:-
RSI_915_34364 2.6 136 136 0 0 yes blast ugugugugugugugugugugu aggcacacacaggcacacacacg ugugugugugugugugugugugcgugcgcacgcacacacaggcacacacaggcacacacacg NW_017739834.1:106386..106448:-
RSI_484_28148 2.6 28 26 0 2 yes blast cagugcaaugauauugucaaagc gcucugacgagguugcacuacu gcucugacgagguugcacuacuuugcucugagaagcagugcaaugauauugucaaagc NW_017739403.1:395637..395695:-
RSI_233_19413 2.6 27 27 0 0 yes blast uguuccugcugaacugagccag guguuucagcucaguaggcacggg uguuccugcugaacugagccagucugcacaaaucaacuguguuucagcucaguaggcacggg NW_017739152.1:566856..566918:-
RSI_332_23758 2.6 41 40 1 0 yes blast ugccuggccuccucugcccccagg uuaggguggugggaggacucgggcagu uuaggguggugggaggacucgggcaguggggaagguggcagccgccugagcccuucugccuggccuccucugcccccagg NW_017739251.1:1518286..1518366:-
RSI_95_10303 2.6 54 54 0 0 yes blast ccgggcgggcgggcgcgg ccgcccguccgcccgcggg ccgcccguccgcccgcggggacagccacacccgagcccccggcccuucaccugccacggucucccgggcgggcgggcgcgg NW_017739014.1:946558..946639:+
RSI_855_34001 2.6 27 27 0 0 yes blast gcgcgggcugggcgggcgcu cgccccgccacgccccgcgcgg gcgcgggcugggcgggcgcucgggnnnnnnnnnnnnnnnucuugcccgcgaccgcgcgccccgccacgccccgcgcgg NW_017739774.1:166934..167012:-
RSI_486_28176 2.6 13103 13103 0 0 yes blast acccugcucgcugcgcca gugucaugcagggucu acccugcucgcugcgccaguugucaugcagggugucaugcagggucu NW_017739405.1:220467..220514:+
RSI_384_25414 2.5 11 11 0 0 yes blast uuggggagggcaggggagga cucuccgcccaccccgcgg cucuccgcccaccccgcggccgccacuuuggggagggcaggggagga NW_017739303.1:3269..3316:-
RSI_570_30096 2.5 2615 2615 0 0 yes blast cccugcucgcugcgcca gggcagccugcaggguc cccugcucgcugcgccauuugucgugcggggcagccugcaggguc NW_017739489.1:743471..743516:+
RSI_100_11046 2.5 41 41 0 0 yes blast uggcggcggcggcggcugc agcugccgugguggcagaa agcugccgugguggcagaagcugaaguggcggcggcggcggcugc NW_017739019.1:2581008..2581053:-
RSI_371_25044 2.5 191 191 0 0 yes blast uucccuuugucauccuuugccc gcagggauagcaaaggggugc uucccuuugucauccuuugcccaggacucugaguggggcagggauagcaaaggggugc NW_017739290.1:2666947..2667005:+
RSI_800_33603 2.5 581 581 0 0 yes blast aauggcgccacuaggguug acccuaggaaagcgugccauuca acccuaggaaagcgugccauucacauagacuaaaauugaauggcgccacuaggguug NW_017739719.1:250150..250207:+
RSI_256_20663 2.5 109 109 0 0 yes blast cagggcugggcugggcuggg cagcccauuuccggucccaaagca cagggcugggcugggcugggggaucccccaauggggaagcagugggguccgagcacagcccauuuccggucccaaagca NW_017739175.1:1030819..1030898:-
RSI_949_34608 2.5 254 249 5 0 yes blast cagcagcacacugugguuugua caaaccacacugugguguuaga cagcagcacacugugguuuguacggcacuguggccacguccaaaccacacugugguguuaga NW_017739868.1:46188..46250:+
RSI_21_2453 2.5 84 84 0 0 yes blast cccuguccuccaggagcuc gcuggacccuugggaugggggu gcuggacccuugggaugggggugcugagguggguaaggcaccgcagacccuguccuccaggagcuc NW_017738940.1:1050354..1050420:+
RSI_113_12101 2.5 35 35 0 0 yes blast gccccagugggaccaccg gugguggcaggcuucuc gugguggcaggcuucucagacaccuagugcccugagccccagugggaccaccg NW_017739032.1:3818096..3818149:+
RSI_595_30484 2.4 553 553 0 0 yes blast uggguccccaguagcuc gcgggggcugugu uggguccccaguagcucagaacagggcagggggcaugucuuagaugggucccuauuaguucagagcgggggcugugu NW_017739514.1:654885..654962:+
RSI_821_33786 2.4 247 247 0 0 yes blast ugcccaggucggaaggagu accucuguucuggggggu ugcccaggucggaaggagugcuacugcugaccucuguucuggggggu NW_017739740.1:63639..63686:+
RSI_446_27268 2.4 14 14 0 0 yes blast ucugaacacgcucccugcccacg cggguggggagcggggcgggga cggguggggagcggggcggggaauucuccucugaacacgcucccugcccacg NW_017739365.1:509436..509488:-
RSI_486_28195 2.4 19 19 0 0 yes blast ucucucccucucccuucccu ggaagagugaagggagggaaa ggaagagugaagggagggaaaaaguggcagcuucagugugcguguccucucucccucucccuucccu NW_017739405.1:1749638..1749705:+
RSI_354_24573 2.4 12901 12901 0 0 yes blast acccugcucgcugcgcca gugcagggaggccugcagggucu acccugcucgcugcgccauugucgugcagggaggccugcagggucu NW_017739273.1:1509156..1509202:-
RSI_4228_35614 2.4 12159 12159 0 0 yes blast auccugccgacuacgcca gcguccggcggggucu auccugccgacuacgccauguguagugcauggcguccggcggggucu NW_017743147.1:1298..1345:+
RSI_513_28780 2.4 24451 24451 0 0 yes blast ucccuguucgggcgcca gcucugccugagggggaag ucccuguucgggcgccacuggucgcagccugugcgaccaggagggcucugccugagggggaag NW_017739432.1:231848..231911:+
RSI_597_30522 2.4 15 15 0 0 yes blast guagcucagucgguuagag cugggcaacggggcuaccg guagcucagucgguuagagcgcgagcucugggcaacggggcuaccg NW_017739516.1:762027..762073:+
RSI_24_3010 2.4 13 13 0 0 yes blast uagaucugggguggggccu ggcccaccuccagagauucugau ggcccaccuccagagauucugauucuguagaucugggguggggccu NW_017738943.1:11906688..11906734:-
RSI_29_3432 2.4 15 15 0 0 yes blast uccccugcccaggccugcc cugugcccagggcacu uccccugcccaggccugccugaggcugcuugccagagcgauugcaugccagggcugugcccagggcacu NW_017738948.1:2581355..2581424:+
RSI_67_8100 2.4 131952 131952 0 0 yes blast uuaaugcuaaucgugauagggguu cuccuacauauuagcauuaaca uuaaugcuaaucgugauagggguuuuuaccucggacugacuccuacauauuagcauuaaca NW_017738986.1:1388412..1388473:+
RSI_6780_35705 2.4 770 770 0 0 yes blast auccugcucacagcgcca gugccaggcggggucu auccugcucacagcgccauguguuaugcagggugccaggcggggucu NW_017745699.1:44..91:-
RSI_69_8331 2.4 17689 17679 10 0 yes blast uguguauguguguguauauaug uguauauauucauauauacaua uguauauauucauauauacauacauacauauaugugugugugugaguguguguguauguguguguauauaug NW_017738988.1:3504542..3504614:+
RSI_871_34119 2.4 695 695 0 0 yes blast augcaccugggcaaggauuc auccuugcugucugggugcuagu auccuugcugucugggugcuagugcugucucaaugcaaugcaccugggcaaggauuc NW_017739790.1:318155..318212:+
RSI_614_31211 2.4 16 16 0 0 yes blast uccuucauuccaccggagucugu agauuucaguggagugaaguuca uccuucauuccaccggagucugucucauacccaaccagauuucaguggagugaaguuca NW_017739533.1:842825..842884:-
RSI_145_14331 2.4 417 417 0 0 yes blast acccugcucgcugcgcc ggcggccugcggggucu acccugcucgcugcgccguuugucaugcagggcggccugcggggucu NW_017739064.1:1101091..1101138:-
RSI_133_13562 2.4 344 344 0 0 yes blast gcgcggaggggcggggcggg cgucccgcgccugcaccccc cgucccgcgccugcacccccagccucannnnnnnnnnnnnnnnnnnnnccgaggucacgcgcggaggggcggggcggg NW_017739052.1:206075..206153:-
RSI_127_13242 2.4 191 111 0 80 yes blast uugggccccacccccggagacu uagaccugggguagggccuggg uugggccccacccccggagacugugaaucaguaaguagaccugggguagggccuggg NW_017739046.1:6503628..6503685:+
RSI_68_8170 2.4 3143 3141 2 0 yes blast gggcgcgcgccgggccgggc ggggcgacgcgcgccgcc gggcgcgcgccgggccgggcgcgaggagccgcgggagaaggggcggagggcgggggcgacgcgcgccgcc NW_017738987.1:1485458..1485528:+
RSI_520_28982 2.4 363 363 0 0 yes blast caagucacuagugguuccguuuag aaaugguacccuagugacuacaa caagucacuagugguuccguuuaguagaugguugugcauuguuucaaaaugguacccuagugacuacaa NW_017739439.1:650417..650486:+
RSI_399_25886 2.4 12 12 0 0 yes blast acacuguacuggaagauggacc gccaucuuuaccagacaguguua gccaucuuuaccagacaguguuaggagcuucacaauuagaccauccaacacuguacuggaagauggacc NW_017739318.1:1465869..1465938:-
RSI_670_32049 2.4 18 18 0 0 yes blast acucaaacugugggggcacuu gugccgccaucuuuugaguuu acucaaacugugggggcacuuucuguucugucgaggaaagugccgccaucuuuugaguuu NW_017739589.1:353458..353518:-
RSI_94_10236 2.4 21 15 6 0 yes blast gcggcggcagcggcggcagc ugccgcccaaugucauagaca gcggcggcagcggcggcagcagcagcaacaugcccgcgucuguggcccacgucccugcugcaaugcugccgcccaaugucauagaca NW_017739013.1:370207..370294:+
RSI_239_19708 2.4 64 64 0 0 yes blast auuggacuuggagucaggaggc cucagcuucacacagugg auuggacuuggagucaggaggccagucuuagagucaggaggcuggccucagcuucacacagugg NW_017739158.1:2618452..2618516:+
RSI_16_1975 2.4 12892 12892 0 0 yes blast acccugcucgcugcgcca gcguccggcggggucu acccugcucgcugcgccauuugucaugcagggcguccggcggggucu NW_017738935.1:4438239..4438286:-
RSI_35_4161 2.4 16 16 0 0 yes blast uucaaacccaugcuguucaagg uugaacaacacgguuugaacu uugaacaacacgguuugaacuaugcagguucauuuauaugcgggguuuuucaauggaccuguccaguucaaacccaugcuguucaagg NW_017738954.1:2067769..2067857:+
RSI_274_21524 2.4 13103 13103 0 0 yes blast acccugcucgcugcgcca ggcggccugcagggucu acccugcucgcugcgccaguugucgugcagggcggccugcagggucu NW_017739193.1:3545044..3545091:+
RSI_174_16274 2.3 21 21 0 0 yes blast ucucccaacccuuguaccagug cugguacaggcaugggaggca ucucccaacccuuguaccagugaugugcugcagucccugguacaggcaugggaggca NW_017739093.1:961281..961338:+
RSI_14_1642 2.3 488 488 0 0 yes blast ugagaacugaauuccauggguug accugugaaauucaguucuucag ugagaacugaauuccauggguugugucaaugucagaccugugaaauucaguucuucag NW_017738933.1:2551722..2551780:+
RSI_536_29474 2.3 5165 5165 0 0 yes blast uaauacugucugguaaugccg ucuuaccagacacgguuaga ucuuaccagacacgguuagaccuggguccuucugucuaauacugucugguaaugccg NW_017739455.1:960349..960406:-
RSI_256_20664 2.3 109 109 0 0 yes blast cagggcugggcugggcuggg gagcuuggccugacccauag gagcuuggccugacccauagaggccgauagggaagcugcagggcugggcugggcuggg NW_017739175.1:1030878..1030936:-
RSI_773_33358 2.3 12 12 0 0 yes blast auggggcccaggaaucugcauu uguagauucccaaauccaucu uguagauucccaaauccaucuccagagauuccagcauguuagcucugggauggggcccaggaaucugcauu NW_017739692.1:50956..51027:-
RSI_368_24981 2.3 145 145 0 0 yes blast ugugugugugugugugugugu gcauauauauauacauacaua uguguguguguguguguguguaugugcauauauauauacauacaua NW_017739287.1:373183..373229:-
RSI_628_31409 2.3 12 12 0 0 yes blast uguggcucaguugguugga cuaacgccgaggucgccgg uguggcucaguugguuggagugccaugcuccuaacgccgaggucgccgg NW_017739547.1:284022..284071:-
RSI_520_28978 2.3 12 12 0 0 yes blast uaaaaugcucagacuccuguggu cacggauguuugagcaugcacu uaaaaugcucagacuccugugguggccgcucaugcaccacggauguuugagcaugcacu NW_017739439.1:431284..431343:+
RSI_228_19196 2.3 214 214 0 0 yes blast ggaggggaggaggcuuu ggcauaaucuccgucuccccaa ggcauaaucuccgucuccccaaaccaggaggggaggaggcuuu NW_017739147.1:237906..237949:-
RSI_421_26498 2.3 25 25 0 0 yes blast uggagugugacaaugguguuu acgccauuaucacacuaaaua uggagugugacaaugguguuuguguccaaacuaucaaacgccauuaucacacuaaaua NW_017739340.1:738981..739039:+
RSI_4_437 2.3 166 166 0 0 yes blast cugggcugggguggggggug cuuuccaucccagucagggca cuuuccaucccagucagggcagucagagaaggcuugcugggcugggguggggggug NW_017738923.1:10987155..10987211:+
RSI_424_26607 2.3 77 77 0 0 yes blast uaacagucuccagucacggcc ccuuggcucuagacugcuuacu ccuuggcucuagacugcuuacugcccgggccgcccucaguaacagucuccagucacggcc NW_017739343.1:761922..761982:+
RSI_468_27714 2.3 12 12 0 0 yes blast cggggggcggggugggggg ucccagcuccggugccuguc cggggggcgggguggggggcggnccagggcaagagcuucagcucucggccaguuggucaggguucgaaucccagcuccggugccuguc NW_017739387.1:775526..775614:+
RSI_118_12476 2.3 16 13 3 0 yes blast uccgcugcugcugcugcug guagggacagcuagaaacagg uccgcugcugcugcugcugcugcugcugcugcugcugcugcugcugcugcagcugcuguagggacagcuagaaacagg NW_017739037.1:198343..198421:+
RSI_871_34116 2.3 657 550 0 107 yes blast uaauccuugcuaccugggugagagu acuugggcaaggauucuga uaauccuugcuaccugggugagagugcuuucugaaugcagugcacuugggcaaggauucuga NW_017739790.1:315237..315299:+
RSI_14_1791 2.3 463 463 0 0 yes blast uugugcuugaucuaaccaugug caugguucugucaagcaccgcg uugugcuugaucuaaccaugugguggaacgauggaaacggaacaugguucugucaagcaccgcg NW_017738933.1:8395707..8395771:-
RSI_334_23846 2.3 23 23 0 0 yes blast guaggacccugggcuccu uugcccaaagccucaca uugcccaaagccucacagcaauugcagcacuguuguggguaggacccugggcuccu NW_017739253.1:823744..823800:-
RSI_605_31078 2.3 515 515 0 0 yes blast gggggugccaaaaaaaaaaaaaaa guuguuuuuuuuuggcauccucug gggggugccaaaaaaaaaaaaaaaaaaaguauacacauuuuaagaguuguugucuuaaaauguguguauguuguuuuuuuuuggcauccucug NW_017739524.1:378690..378783:+
RSI_371_25028 2.3 17 17 0 0 yes blast cagccugggucucccuu gcauagcccaggacuuag cagccugggucucccuugaagaacaagcauagcccaggacuuag NW_017739290.1:766507..766551:+
RSI_106_11495 2.3 172 172 0 0 yes blast uugguccccuucaaccagc uggucaaacggaaccaagu uggucaaacggaaccaaguccgucuuccugagagguuugguccccuucaaccagc NW_017739025.1:6631658..6631713:+
RSI_61_7545 2.3 191 181 10 0 yes blast ugugugugugugugugugugu auauauacauauauaccaua auauauacauauauaccauauacacaaucauauauauguauacauauguacacauauauguauguguguaugugugugugugugugugugugu NW_017738980.1:4328139..4328232:+
RSI_209_18261 2.2 136 136 0 0 yes blast uggaagacuagugauuuuguuguu caacaagucacagcuucccca uggaagacuagugauuuuguuguucugauguacgaugacaacaagucacagcuucccca NW_017739128.1:447705..447764:-
RSI_48_6010 2.2 2962 2962 0 0 yes blast ucuuugguuaucuagcuguauga auaaagcuagauaaccgaaagu ucuuugguuaucuagcuguaugagugccacagagccgucauaaagcuagauaaccgaaagu NW_017738967.1:8827731..8827792:+
RSI_742_33081 2.2 2521 2521 0 0 yes blast aauugcacgguauccaucugg ggguggauagcgaugcaauuuu ggguggauagcgaugcaauuuugaucaguauaacaggagaaaaauugcacgguauccaucugg NW_017739661.1:857157..857220:+
RSI_67_8105 2.2 49 49 0 0 yes blast ugaggggcagagagagagag cuacucuguucugcugccucggg cuacucuguucugcugccucggggguuggugauuaggcuaggucucugaggggcagagagagagag NW_017738986.1:1450727..1450793:+
RSI_61_7555 2.2 25 25 0 0 yes blast ggaggggcagagagccaga ugguauuucaaugcccccucau ugguauuucaaugcccccucauuuggugggucaggcugcaugaggcaguguggcuguguggaggggcagagagccaga NW_017738980.1:5602185..5602263:+
RSI_155_14977 2.2 170 166 4 0 yes blast ugugugugugugugugugugu acugcaaaugggcugugcuucacc acugcaaaugggcugugcuucaccgcgugugugugugcgugugugugcgcgcgcgcgugcgugugugugugugugugugugu NW_017739074.1:1546107..1546189:+
RSI_12_1404 2.2 11 10 0 1 yes blast acauccggacgguccugggccag cccuccgaggccaagcug acauccggacgguccugggccagcagauucuggggcagcuggacagcuccagccuggcucugcccuccgaggccaagcug NW_017738931.1:2199639..2199719:+
RSI_174_16327 2.2 55 55 0 0 yes blast agugccugcuaugugccagg aggugcaguagggaacag agugccugcuaugugccaggcccugugcugggccaggugcaguagggaacag NW_017739093.1:1248182..1248234:-
RSI_40_5154 2.2 18 17 1 0 yes blast gguggccgguuagcucaguuggua ccacgugagcugcgcccuccacaac gguggccgguuagcucaguugguagagggaggugcuguuaacaacaagguugccgguucgauucccacaugggccacgugagcugcgcccuccacaac NW_017738959.1:6668698..6668796:+
RSI_3_321 2.2 4851 4851 0 0 yes blast ugagugugugugugugagugu acucacaugcacacuggca ugagugugugugugugaguguguacucacaugcacacuggca NW_017738922.1:6796196..6796238:-
RSI_251_20332 2.2 604 604 0 0 yes blast gcgcgcgccgggccgggc cuuuaaagccugggcgccccn gcgcgcgccgggccgggcgcuggcgggaggcgccgucggccgccuuuaaagccugggcgccccn NW_017739170.1:423195..423259:+
RSI_84_9368 2.2 17699 17699 0 0 yes blast cuagggcccuggcuccaucuccu gagugggguuucgacccuaacc cuagggcccuggcuccaucuccuuuaggaaaaccuucuguggggagugggguuucgacccuaacc NW_017739003.1:4532393..4532458:+
RSI_81_9190 2.2 131 131 0 0 yes blast ugugugugugugugugugugu acacacaauggaauauuuauu uguguguguguguguguguguacguguguaaacacacacguacacacacaauggaauauuuauu NW_017739000.1:2389337..2389401:+
RSI_535_29405 2.2 27 27 0 0 yes blast uguuccugcugaacugagccag gauaucagcucaguaggcaccgg uguuccugcugaacugagccaguguguaaaaugagaacugauaucagcucaguaggcaccgg NW_017739454.1:1469488..1469550:-
RSI_102_11197 2.2 2962 2962 0 0 yes blast ucuuugguuaucuagcuguauga auaaagcuagauaaccgaaagua ucuuugguuaucuagcuguaugaguguauuggucuucauaaagcuagauaaccgaaagua NW_017739021.1:760516..760576:-
RSI_52_6592 2.2 73783 73781 0 2 yes blast caaagaauucuccuuuugggcuu cccaaaggugaauuuuuugggaa caaagaauucuccuuuugggcuuucugaguuuaucuuaagcccaaaggugaauuuuuugggaa NW_017738971.1:7824496..7824559:+
RSI_405_26051 2.2 11 11 0 0 yes blast acaagggcugcuccagcu cuggucuggccccagcau cuggucuggccccagcauaccccucuccagggucacagagccuugagcagccugggugaacaagggcugcuccagcu NW_017739324.1:990079..990156:+
RSI_518_28924 2.2 2962 2962 0 0 yes blast ucuuugguuaucuagcuguauga auaaagcuagauaaccgaaagua ucuuugguuaucuagcuguaugagugguguggagucuucauaaagcuagauaaccgaaagua NW_017739437.1:541440..541502:+
RSI_251_20436 2.1 375 375 0 0 yes blast ucggauccgucugagcuugg aagcucagagggcucugauu aagcucagagggcucugauucagaaagaucaucggauccgucugagcuugg NW_017739170.1:3389282..3389333:-
RSI_20_2426 2.1 rRNA 43979 32746 0 11233 yes blast gccauaccacccugaacgcgcccga ucggaagcuaagcagggucgggcc gccauaccacccugaacgcgcccgaucucaucugaucucggaagcuaagcagggucgggcc NW_017738939.1:3574580..3574641:-
RSI_38_4810 2.1 53841 47357 0 6484 yes blast cucggcguggcgucggucgugg ucgaccggaccucgaccggcu ucgaccggaccucgaccggcucgucuguguugccaaucgacucggcguggcgucggucgugg NW_017738957.1:6189537..6189599:-
RSI_4_438 2.1 166 166 0 0 yes blast cugggcugggguggggggug cccggggcacaggcuggca cugggcugggguggggggugcgggugaaggggcccggggcacaggcuggca NW_017738923.1:10987191..10987242:+
RSI_60_7460 2.1 58 58 0 0 yes blast acaguagucugcacauugguu ccaguguuuagacuaucuguuc ccaguguuuagacuaucuguucaggaucccaaauuguacaguagucugcacauugguu NW_017738979.1:4157475..4157533:-
RSI_520_28980 2.1 18 18 0 0 yes blast aacuguuugcagaggaaacugaga uccgucuccucugcaaagaagcaa aacuguuugcagaggaaacugagauuuucuagcuauaucuccgucuccucugcaaagaagcaa NW_017739439.1:649377..649440:+
RSI_567_30039 2.1 131 131 0 0 yes blast uuggcaccgugccuggu cagaggcugcccagc uuggcaccgugccugguacacaauaggugcucaguaaaugguuguggcuaccauuuauugcuguuguuguuccagaggcugcccagc NW_017739486.1:662236..662323:-
RSI_228_19195 2.1 214 214 0 0 yes blast ggaggggaggaggcuuu agccagcuccccccauccug ggaggggaggaggcuuuuaucccccaccagccagcuccccccauccug NW_017739147.1:237875..237923:-
RSI_237_19684 2.1 15 15 0 0 yes blast ucgggggaccaggagucgggc caugagucugggcucggga caugagucugggcucgggagaaacguuaccucuuucgggggaccaggagucgggc NW_017739156.1:804805..804860:-
RSI_11_1318 2.1 12 12 0 0 yes blast uguagcucagcugguuagag uggaccacagugagcugcgcc uguagcucagcugguuagagcgcagugcugggagcaccaagguuacugguuugaucccugcauggaccacagugagcugcgcc NW_017738930.1:1075672..1075755:+
RSI_228_19245 2.1 386 386 0 0 yes blast ucuggccucugacucccugugu acagggagguggccucuug ucuggccucugacucccuguguggacacauacagggagguggccucuug NW_017739147.1:5298671..5298720:-
RSI_251_20406 2.1 275 275 0 0 yes blast ugaaauguuuaggaccacuaga cagugguucuuaacacuucaac cagugguucuuaacacuucaacaguucuguagcgcaauugugaaauguuuaggaccacuaga NW_017739170.1:1092634..1092696:-
RSI_810_33704 2.0 3062678 3062675 0 3 yes blast ugagguaguagguuguauaguu uacagccuccuagcuuuccu ugagguaguagguuguauaguucagaaaugcguaaagggagaucacuguacagccuccuagcuuuccu NW_017739729.1:483683..483751:+
RSI_1093_35082 2.0 473 473 0 0 yes blast uucaacggguauuuauugagc ucaauaaaugucuguugaauu ucaauaaaugucuguugaauugagaugcguuacauucaacggguauuuauugagc NW_017740012.1:57655..57710:-
RSI_124_12980 2.0 20 20 0 0 yes blast acaggcagggcagggcuc gcagagccagccugggg gcagagccagccuggggacagagggacacaggcagggcagggcuc NW_017739043.1:2164155..2164200:-
RSI_51_6518 2.0 13 13 0 0 yes blast auggggcccaggaaucugcauu ugcagauucuggaguuuucaucuaccc ugcagauucuggaguuuucaucuaccccaauuuaaaaaguuugggauggggcccaggaaucugcauu NW_017738970.1:12834873..12834940:-
RSI_742_33077 2.0 1060 1059 0 1 yes blast ugugcaaauccaugcaaaacuga uuaguuuugcagguuug uuaguuuugcagguuugcauuucagcguauauauguguauauggcugugcaaauccaugcaaaacuga NW_017739661.1:856864..856932:+
RSI_6780_35706 2.0 771 770 1 0 yes blast auccugcucacagcgcca ccucugucaugcagaguac ccucugucaugcagaguacccugcucgcugcaccaugugucaugcgggggauccugcucacagcgcca NW_017745699.1:73..141:-
RSI_228_19125 2.0 18 18 0 0 yes blast uccaggagggcaggggcu cuccugucuggccuggacu cuccugucuggccuggacucuccaggagggcaggggcu NW_017739147.1:10822..10860:+
RSI_199_17652 2.0 13072 13072 0 0 yes blast acccugcucgcugcgcca ggcggccugcggggucu acccugcucgcugcgccaaugugucaugcagggcggccugcggggucu NW_017739118.1:1678924..1678972:+
RSI_810_33702 2.0 23 23 0 0 yes blast aacccguagauccgaacuugug caagcuugugucuacagguaug aacccguagauccgaacuuguggugauacuccgcacaagcuugugucuacagguaug NW_017739729.1:473821..473878:+
RSI_25_3124 2.0 12 12 0 0 yes blast guguguguguguggguaug uaucuccgucgugcgcug guguguguguguggguauguauguguggugggguuugcuuugucauucauaucuccgucgugcgcug NW_017738944.1:4967467..4967534:+
RSI_42_5454 2.0 15 15 0 0 yes blast caggaggaggagcggcggc ccugccuccucccccggc caggaggaggagcggcggcugcucagggauccagcccugccuccucccccggc NW_017738961.1:1645827..1645880:+
RSI_7_884 2.0 57 57 0 0 yes blast aucgaggcuagagucacgcuu gugugcuagaguccucgaaga aucgaggcuagagucacgcuuggguaucaacuauugccuuagugugcuagaguccucgaaga NW_017738926.1:1346741..1346803:+
RSI_133_13554 2.0 3029 3029 0 0 yes blast ugaccuaugaauugacagccagu uggcugccaauuccauaggucaca ugaccuaugaauugacagccagugcucucguguccccucuggcugccaauuccauaggucaca NW_017739052.1:2074491..2074554:+
RSI_52_6625 2.0 49 49 0 0 yes blast cugcacauuguuagagcuug aguguaggugaugugcuaca cugcacauuguuagagcuuggaguggaggccaguggcuggccgaugaacucccaaguguaggugaugugcuaca NW_017738971.1:2246836..2246910:-
RSI_710_32546 2.0 19 19 0 0 yes blast uaugcguaugcguaugcguaug uauguauauguguacguguaug uauguauauguguacguguauguguauguguaugcguaugcguaugcguaug NW_017739629.1:145851..145903:-
RSI_261_20930 2.0 396 396 0 0 yes blast acccugcucgcugcgcc ggcagccuguggggucu acccugcucgcugcgccuuuugucgugcggggcagccuguggggucu NW_017739180.1:2055462..2055509:+
RSI_137_13823 2.0 16 16 0 0 yes blast uucaaacccaugcuguucaagg cugaagaacacgggucugaauu cugaagaacacgggucugaauucuguauccacuucugcuugaucugagcaguucaaacccaugcuguucaagg NW_017739056.1:374167..374240:+
RSI_251_20430 2.0 12 12 0 0 yes blast aauauaacacagauggccugu agguugucugugaugaguucg agguugucugugaugaguucgcuuuauuaaugacgaauauaacacagauggccugu NW_017739170.1:3211708..3211764:-
RSI_25_3093 2.0 12 12 0 0 yes blast auggggcccaggaaucugcauu ugcaggguugcaggcuccccaucu ugcaggguugcaggcuccccaucugaggaccugugccagagguccacuauggggcccaggaaucugcauu NW_017738944.1:2795151..2795221:+
RSI_148_14553 2.0 695 695 0 0 yes blast ggcaguagguuguauaguua accacacaaccuacuaccuc ggcaguagguuguauaguuaucuucugagggggcaacaucacugcccugaaaccacacaaccuacuaccuc NW_017739067.1:1377200..1377271:-
RSI_516_28830 2.0 22 21 1 0 yes blast uggaggagcucgcagucuagu uggauucucuccucagc uggaggagcucgcagucuaguugcuugccucucuuucuccacuaggcuugggucucugggggcaagagucauggauucucuccucagc NW_017739435.1:97196..97284:+
RSI_547_29757 1.9 12965 12965 0 0 yes blast acccugcucgcugcgcca gguggccugcggggucu acccugcucgcugcgccauaugucacacaggguggccugcggggucu NW_017739466.1:1726317..1726364:-
RSI_251_20432 1.9 36 36 0 0 yes blast aauguugcucggugaaccccu agguuacccgagcaacuuug agguuacccgagcaacuuugcaucuggacgacgaauguugcucggugaaccccu NW_017739170.1:3212325..3212379:-
RSI_855_33998 1.9 14 14 0 0 yes blast uguguguguacguguguaua uaggugugcacauauaggua uguguguguacguguguauagacaugcaugcauauaaguguguguguaggugugcacauauaggua NW_017739774.1:58342..58408:+
RSI_594_30474 1.9 157 56 0 101 yes blast uagcaccauuugaaaucaguguu cugguuucacaugguggcuuagau cugguuucacaugguggcuuagauuuuuccaucuuuguaucuagcaccauuugaaaucaguguu NW_017739513.1:1439294..1439358:+
RSI_25_3069 1.9 119 119 0 0 yes blast gguagagcggaggacugua cagucaguaaaugcugcuccugg cagucaguaaaugcugcuccuggugcuuucuuugacagcucagccgguagagcggaggacugua NW_017738944.1:758020..758084:+
RSI_179_16633 1.9 51 51 0 0 yes blast ggguuucccggucagggaa ccaggaccgagagacucaa ggguuucccggucagggaaccaaacguugcggaaaagcagccaggaccgagagacucaa NW_017739098.1:2021466..2021525:-
RSI_21_2593 1.9 68 68 0 0 yes blast uuauggcccuucgguaauucacug gugaauucuaccagugccauacac uuauggcccuucgguaauucacugaccgagacuguucacagugaauucuaccagugccauacac NW_017738940.1:7289908..7289972:-
RSI_16_1947 1.9 384 384 0 0 yes blast uggcaguguauuguuagcuggu cagcuaacaugcaacugcuauc uggcaguguauuguuagcugguugaauaugugaaugacaucagcuaacaugcaacugcuauc NW_017738935.1:301095..301157:-
RSI_282_21895 1.9 12820 12820 0 0 yes blast acccugcucgcugcgcca gagcggccugcagggucu acccugcucgcugcgccacagagcggccugcagggucu NW_017739201.1:765301..765339:+
RSI_178_16605 1.9 rRNA 269 269 0 0 yes blast cugaucucggaagcuaagc uuaguauuuggaugggag cugaucucggaagcuaagcaggauccagccugguuaguauuuggaugggag NW_017739097.1:7596235..7596286:-
RSI_256_20653 1.9 12 12 0 0 yes blast cuuuagcucaguugguuagagc uuugaucuccacaugggccaguaugag cuuuagcucaguugguuagagcgcaaugcucguaacaccaggguugcuguuuugaucuccacaugggccaguaugag NW_017739175.1:826625..826702:-
RSI_273_21488 1.8 160 160 0 0 yes blast ucuggaugugcugaccccugcgau cccagggcaaggcuuauccauggc cccagggcaaggcuuauccauggcagucuggaugugcugaccccugcgau NW_017739192.1:3860970..3861020:-
RSI_5_677 1.8 78 78 0 0 yes blast ugugucuguguguguauauaug uauucauauauauugauauaua ugugucuguguguguauauauguauauauauucauauucauauauauucauauucauauauauugauauaua NW_017738924.1:1974258..1974330:-
RSI_99_10953 1.8 12 12 0 0 yes blast cuuuagcucaguugguuagagc augggccacucugagcugugccc cuuuagcucaguugguuagagcauagugcugguagcaccaagguugcugguucaaccccugcaugggccacucugagcugugccc NW_017739018.1:3150689..3150774:-
RSI_921_34399 1.8 763 763 0 0 yes blast ccccacguugggcgcca gccccgaccaguggggca ccccacguugggcgccagaaaugccccgaccaguggggca NW_017739840.1:40119..40159:-
RSI_475_27921 1.8 24 24 0 0 yes blast gguucccggucagggaacca aauccaagaccggaaugaaccca gguucccggucagggaaccaaauguugcagaauccaagaccggaaugaaccca NW_017739394.1:173173..173226:-
RSI_549_29775 1.8 38 38 0 0 yes blast uucuaaugugcagccaagguug auauuggccauacauuagaauu uucuaaugugcagccaagguugaaaacacaagcuuaagacauaaccuagagcagugcacuucaauauuggccauacauuagaauu NW_017739468.1:362249..362334:-
RSI_187_17013 1.8 157 155 2 0 yes blast ugugugugugugugugugugu agacaagacugcauagucaca agacaagacugcauagucacacaauuuuauacaaagcugaagaugcagugugugugugugugugugugugugugugugugugugu NW_017739106.1:447885..447970:+
RSI_88_9893 1.8 29 29 0 0 yes blast ggccgguuagcucaguugguuaga uccccacaugggccacugugagcugc ggccgguuagcucaguugguuagagcauuguucugggaaugccaagauugccaguucgauccccacaugggccacugugagcugc NW_017739007.1:1131536..1131621:-
RSI_447_27289 1.8 51 51 0 0 yes blast ggguuucccggucagggaa ccaggacuggaaagaacccaa ggguuucccggucagggaaccaagaauauuauggauaccaggacuggaaagaacccaa NW_017739366.1:317861..317919:-
RSI_84_9428 1.8 103 103 0 0 yes blast gguuucauguuguugggu cuaagagcacagccuc gguuucauguuguuggguguucugccugcacaacagcuaagagcacagccuc NW_017739003.1:12714888..12714940:+
RSI_46_5823 1.8 151 151 0 0 yes blast ugugugugugugugugugugu guaggcaccacaggaagaau uguguguguguguguguguguguguccuguagggcacauguaggcaccacaggaagaau NW_017738965.1:1670783..1670842:-
RSI_330_23630 1.8 896 896 0 0 yes blast uggacggagaacugauaagggc acuuaucacuuuuccagccagc acuuaucacuuuuccagccagcuuugcgacucgaaguguuggacggagaacugauaagggc NW_017739249.1:22647..22708:-
RSI_294_22426 1.7 10 8 0 2 yes blast ugacccccacccucccugcagc guguggguguggggaga guguggguguggggagagaaggggcccacggacaacuggcaccugcccugacccccacccucccugcagc NW_017739213.1:1692586..1692656:-
RSI_742_33066 1.7 12 12 0 0 yes blast uuuugcgauguguuccuaauau auugggaacauuuugcauucau uuuugcgauguguuccuaauauguaauauaaauguauugggaacauuuugcauucau NW_017739661.1:556188..556245:+
RSI_60_7310 1.7 2411351 2411323 0 28 yes blast aacauucauugcugucgguggg cucacugaucaaugaaugcaaa aacauucauugcugucgguggguuugagucugaaucaacucacugaucaaugaaugcaaa NW_017738979.1:1514771..1514831:+
RSI_926_34423 1.7 15 15 0 0 yes blast gccacaccugaccccuggcau uccagagagcaggugcagaggcuc uccagagagcaggugcagaggcucauagcagaacacccgccacaccugaccccuggcau NW_017739845.1:179276..179335:+
RSI_267_21177 1.7 13872 13872 0 0 yes blast aucccggacgagccccc auguuaaguccuggaaucu aucccggacgagcccccgaauguuaaguccuggaaucu NW_017739186.1:1233578..1233616:-
RSI_929_34478 1.7 133079 133079 0 0 yes blast acuggacuuggagucagaaggc cucccugacuuccuaugagaac acuggacuuggagucagaaggccuggguuccaggcucagauccucccugacuuccuaugagaac NW_017739848.1:624653..624717:+
RSI_3340_35568 1.7 26 26 0 0 yes blast aggggccagggcuggcacu ggucagaucugucuuacucc aggggccagggcuggcacucaggucaggucagaucugucuuacucc NW_017742259.1:1064..1110:+
RSI_500_28526 1.7 57 57 0 0 yes blast gugugugugugugagugu ccuccaucaagcauug gugugugugugugaguguaugugcguguacugcucugugugguuuaccuccaucaagcauug NW_017739419.1:1052624..1052686:+
RSI_98_10885 1.7 50416 50411 1 4 yes blast agcagcauuguacagggcu agcuucuuuacagugcugccuug agcuucuuuacagugcugccuuguagcauucaggucaagcagcauuguacagggcu NW_017739017.1:1660126..1660182:+
RSI_486_28182 1.7 24 24 0 0 yes blast gguucccggucagggaacca aauccaagaccggaaagaaccca gguucccggucagggaaccaaauauugcagaauccaagaccggaaagaaccca NW_017739405.1:1148527..1148580:+
RSI_11_1311 1.7 13 12 0 1 yes blast acaaaaagguugccaguuugau gguuagcucaguugguu gguuagcucaguugguugagugcuggugcucuuaacaaaaagguugccaguuugau NW_017738930.1:53313..53369:+
RSI_742_33076 1.7 162 162 0 0 yes blast caaagugcucauagugcagguag uacuguagugugggcacuuccag caaagugcucauagugcagguaguuuugucauuacucuacuguagugugggcacuuccag NW_017739661.1:856742..856802:+
RSI_742_33068 1.6 12 12 0 0 yes blast uuuugcgauguguuccuaauau auugggagcauuuugcaugcau uuuugcgauguguuccuaauauguaguauaaauauauugggagcauuuugcaugcau NW_017739661.1:556322..556379:+
RSI_161_15468 1.6 53 53 0 0 yes blast gugugugugugugagugu acccauacacacauacaa gugugugugugugagugugaaaaacgacgggauaacgaucuccagacacacacccauacacacauacaa NW_017739080.1:1715097..1715166:+
RSI_13_1606 1.6 39952 39949 0 3 yes blast agcagcauuguacagggcu agcuucuuuacaguguugccuug agcuucuuuacaguguugccuuguggcauggaguucaagcagcauuguacagggcu NW_017738932.1:3708264..3708320:-
RSI_606_31091 1.6 158 155 3 0 yes blast ugugugugugugugugugugu auauauacauauauuuauagu auauauacauauauuuauaguauuauauauauauauuauagugugugugugugugugugugugugugugugugugugugugu NW_017739525.1:451986..452068:+
RSI_244_20008 1.6 18 18 0 0 yes blast cccgcgggccguaguuugg aauuaacaacggauugcggacc aauuaacaacggauugcggaccgcaguuggcccgcgggccguaguuugg NW_017739163.1:1703424..1703473:-
RSI_325_23481 1.6 2393119 2393119 0 0 yes blast aacauucauugcugucgguggg cacugaacaaugaaugcaac aacauucauugcugucgguggguugaacuguguggacaagcucacugaacaaugaaugcaac NW_017739244.1:1035165..1035227:-
RSI_565_30004 1.5 15 15 0 0 yes blast caggcuggguggggugggg uggccuuauaucucaaccugac uggccuuauaucucaaccugaccacuuuaucaggcuggguggggugggg NW_017739484.1:191572..191621:-
RSI_436_26993 1.5 13537 13537 0 0 yes blast acccugcucgcugcgcca guguaaugcagggucu acccugcucgcugcgccaaguguaaugcagggucu NW_017739355.1:475236..475271:+
RSI_127_13249 1.5 10 10 0 0 yes blast uguguauguauguguauauaug uguauauauauacauauauaug uguauauauauacauauauaugugucuauauauacaugugucuauacauauauguguauguauguguauauaug NW_017739046.1:7765014..7765088:+
RSI_27_3340 1.5 219 153 66 0 yes blast ugugugugugugugugugugu aggcaaggagacacauacacu ugugugugugugugugugugugugugugugugugugugugugugugugugugagagagagagagagagagagagagagagacaggcaaggagacacauacacu NW_017738946.1:2207297..2207400:-
RSI_463_27650 1.5 17 17 0 0 yes blast uuuuaaaaagauucccagguga gccugggaacuuguuagaaau gccugggaacuuguuagaaaugccaaauagcaggcucuccccagacugacuugcgucugcaucugcuuuuuuaaaaagauucccagguga NW_017739382.1:363161..363251:-
RSI_20_2423 1.5 2307 2307 0 0 yes blast gcaguggguucucagaac ucuuagagcaaugcug gcaguggguucucagaacuguauacccggcucuuagagcaaugcug NW_017738939.1:3471602..3471648:-
RSI_3_289 1.5 262 262 0 0 yes blast uagaucugggguagggccu augcugcccuaaggaucacac uagaucugggguagggccugagagucugcauuucugauuaccuccaagcagaugcugacgcagaugcugcccuaaggaucacac NW_017738922.1:1012081..1012165:-
RSI_318_23246 1.5 17679 17679 0 0 yes blast uguguauguguguguauauaug uauauacacacacagacauaua uguguauguguguguauauauguauacauauauacacacacagacauaua NW_017739237.1:5070497..5070547:+
RSI_59_7264 1.5 24 24 0 0 yes blast aggggcugggugggugugg acauuucuagucuuucc acauuucuagucuuuccuuuauagagacgggagaggggcugggugggugugg NW_017738978.1:1830067..1830119:-
RSI_609_31134 1.5 24 24 0 0 yes blast gguucccggucagggaacca gauaccaggaccggaaagaaccca gguucccggucagggaaccaauaauguuacggauaccaggaccggaaagaaccca NW_017739528.1:349119..349174:+
RSI_475_27897 1.4 6229 6229 0 0 yes blast cuccuggcuggcucgcca gucacggccaacccgggauuu gucacggccaacccgggauuuccccuauggaugccuuuuucccaaggcccauuucuugggucuccuggcuggcucgcca NW_017739394.1:101918..101997:+
RSI_169_15987 1.4 65 60 3 2 yes blast uguguauguguguguauaua uguauauauauauauauauau uguguauguguguguauauaucuacauaaguguauguauauguguguguguguauauauauauauauauau NW_017739088.1:4351528..4351599:-
RSI_742_33072 1.4 335 335 0 0 yes blast aaaagugcuuacagugcagguag acugcaaugcaagcacuucuuac aaaagugcuuacagugcagguagcuuuuugagaucuacugcaaugcaagcacuucuuac NW_017739661.1:856359..856418:+
RSI_604_30762 1.4 1780 1780 0 0 yes blast cccaaaggcucuuuucagagccacc gagcucugacacugaagguuuuuggagg cccaaaggcucuuuucagagccacccauguuuucacacuaagagcucugacacugaagguuuuuggagg NW_017739523.1:134546..134615:+
RSI_29154_36062 1.4 60 60 0 0 yes blast uguguauguguguguauaua agaacauauuuauaauauauaug agaacauauuuauaauauauauguauguauauauguguauauauauguauacauauguauauauguguguauguguguguauaua NW_017768073.1:8..93:-
RSI_52_6583 1.4 38 38 0 0 yes blast cauuaggacuugggcaucuu gaucucccugucugccuaggg gaucucccugucugccuagggacaugcuaacuaaccugucucauuaggacuugggcaucuu NW_017738971.1:7564151..7564212:+
RSI_189_17154 1.4 11 11 0 0 yes blast caaacaggcugugaagaagcucua gagagaagcagccauauguuccac caaacaggcugugaagaagcucuaugacauuggcguggccaaggucaacacccugcucaggccugauggagagaagcagccauauguuccac NW_017739108.1:1051178..1051270:+
RSI_353_24495 1.4 8 6 0 2 no blast cauggccgugaacugcuccgagau cucguccaugcccucgcc cucguccaugcccucgcccguguaccagugcaggaaggccuugcgccggaacauggccgugaacugcuccgagau NW_017739272.1:2336157..2336232:+
RSI_93_10208 1.4 11 11 0 0 yes blast ucuggcugaggccucca ccagucucagcccacca ccagucucagcccaccaccucccacugcccucuggcugaggccucca NW_017739012.1:360745..360792:-
RSI_671_32068 1.4 10 10 0 0 yes blast ggcuggauggcugaguuggu caacaagguugcugguuaa ggcuggauggcugaguugguuagagcgcaagcucucaacaacaagguugcugguuaa NW_017739590.1:304092..304149:+
RSI_109_11823 1.4 13 13 0 0 yes blast uagaucugggguggggccu guguugcccuuacugcuaga uagaucugggguggggccugagaaucugcauuuuuaacaaguucucagguguugcccuuacugcuaga NW_017739028.1:4805515..4805583:-
RSI_951_34618 1.3 28 28 0 0 yes blast uucuaaugugcagccaagguug gcccaggcuguacguuuuuucaagc gcccaggcuguacguuuuuucaagcacuucaggugcuucuaaugugcagccaagguug NW_017739870.1:346321..346379:-
RSI_151_14786 1.3 10 10 0 0 yes blast ccuuccuccuuccuccccuu ggcagaaggaaagggg ggcagaaggaaaggggcuuggcugggagccgaggcucagcuagcugacucccuuccuccuuccuccccuu NW_017739070.1:2140438..2140508:-
RSI_318_23276 1.3 1104 1104 0 0 yes blast ggagaggaugcauucugag uagaguuaucauccuccaucacu uagaguuaucauccuccaucacugagcaacacugaguuguguuuuaaauagucaugugucguuuaaggagaggaugcauucugag NW_017739237.1:2754745..2754830:-
RSI_38_4752 1.3 rRNA 40289 32746 0 7543 yes blast gccauaccacccugaacgcgcccga cggaagcuaagcagggucgggcc gccauaccacccugaacgcgcccgaucucaucugauugcggaagcuaagcagggucgggcc NW_017738957.1:1252317..1252378:-
RSI_121_12686 1.3 4971 4969 2 0 yes blast ugagugugugugugugagugu acacacugaacauuugcc ugagugugugugugugagugugugugugugaguguguacauacacacacacacugaacauuugcc NW_017739040.1:7741945..7742010:+
RSI_209_18220 1.3 64 64 0 0 yes blast ggaauccccaaagcagcua gccggggaaauuauuccaa ggaauccccaaagcagcuaaaaauagccggggaaauuauuccaa NW_017739128.1:2049025..2049069:+
RSI_846_33911 1.2 10 10 0 0 yes blast ucuuucuuucuuucuuuuaga uaauaagacaaagagagaag ucuuucuuucuuucuuuuagaaacauacucaggaggucagcauggguauccuuuuaauaagacaaagagagaag NW_017739765.1:524462..524536:-
RSI_97_10845 1.2 9 9 0 0 yes blast gcuggggcugggcugggggaa gccccacccccagcuccagaggccc gcuggggcugggcugggggaagagugggcguugcucccuugccccacccccagcuccagaggccc NW_017739016.1:10903978..10904043:-
RSI_261_20935 1.2 31433 31433 0 0 yes blast gggagaggacgcagucugaguggc cauugaugaccauuuuucucuuccuu cauugaugaccauuuuucucuuccuuugggagaguaagagggagaggacgcagucugaguggc NW_017739180.1:2151673..2151736:+
RSI_326_23504 1.2 10 10 0 0 yes blast uauauauauauauguacguau acauauauauguguauguaug uauauauauauauguacguauauauauguauguauauauguauacauguauacauauaccaauauauauacauauauauguguauguaug NW_017739245.1:191983..192073:+
RSI_58_7180 1.2 354 354 0 0 yes blast ggagcucacagucuagu uucugugcuagauccug uucugugcuagauccugagaauacaauguugcauaagcaagauuuuugcuuccaaggagcucacagucuagu NW_017738977.1:1297929..1298001:-
RSI_220_18723 1.2 385 385 0 0 yes blast uuuugguaccugggcagcug guugguccuggugcccuuaaaaa uuuugguaccugggcagcuggugauaguugguccuggugcccuuaaaaa NW_017739139.1:865831..865880:-
RSI_32_3931 1.2 17663 17663 0 0 yes blast uguguauguguguguauauaug uguauaauauucuaauauauaua uguguauguguguguauauaugaugguauacauguauaauauucuaauauauaua NW_017738951.1:6475993..6476048:-
RSI_171_16191 1.2 15 15 0 0 yes blast uucuggaggcucugagagaga ucucuccuguuuucuggugga uucuggaggcucugagagagaaacugccucucuccuguuuucuggugga NW_017739090.1:1995720..1995769:-
RSI_37_4462 1.2 6542 6507 0 35 yes blast ucagugcaucacagaacuuugucu gaaguucuguuauacacucaggcu gaaguucuguuauacacucaggcuguggcucucugaaagucagugcaucacagaacuuugucu NW_017738956.1:586902..586965:-
RSI_479_28034 1.1 31 30 1 0 no blast gcccugcucugagcccg ggcgcaggguggcccca ggcgcaggguggccccagguggugggagggcugccgccugacuccaagcccaccaccuggcccugcucugagcccg NW_017739398.1:496341..496417:-
RSI_978_34755 1.1 11 11 0 0 yes blast agccaccaggagcccuucuu gaaauggcugcuaggcucu gaaauggcugcuaggcucugcuuuuaaauuugagcccagugagccaccaggagcccuucuu NW_017739897.1:141617..141678:+
RSI_51_6339 1.1 100 100 0 0 yes blast gcugcacaguagaaucaccugg gggugucagucucucugagucu gggugucagucucucugagucuaaaaggaggcaacugaaaagaaauuucaggcauucuccuuccuugcugcacaguagaaucaccugg NW_017738970.1:5631131..5631219:+
RSI_752_33194 1.1 10 10 0 0 yes blast acugcacauuagaaucaccug uaugauuucaaugugcagcca uaugauuucaaugugcagccaagacugagaacauuuguucugaaucuugacugcacauuagaaucaccug NW_017739671.1:1173699..1173769:-
RSI_10_1256 1.1 94 94 0 0 yes blast cacacugaccaccagggggu ccccucuugacggccgacu ccccucuugacggccgacuuccacacugaccaccagggggu NW_017738929.1:457337..457378:-
RSI_260_20870 1.1 4452 4443 1 8 yes blast uagcagcacauaaugguuug caggccauauugugcugcc uagcagcacauaaugguuuguggguuuugaaaaggugcaggccauauugugcugcc NW_017739179.1:1354322..1354378:+
RSI_92_10102 1.1 35 35 0 0 yes blast uggcaccuaguaagcacuca guuuucagguacuguugccagg uggcaccuaguaagcacucaguaacuguucacugauuuuguugcugguuuucagguacuguugccagg NW_017739011.1:3464070..3464138:+
RSI_48_6055 1.0 46 46 0 0 yes blast auggaggucucugucuggcu cucaacuuugggucagagaguug auggaggucucugucuggcucuauguggaauuagauuagauuggauuagagcucaacuuugggucagagaguug NW_017738967.1:8029240..8029314:-
RSI_120_12543 1.0 3451 3451 0 0 yes blast gcauuugacuaggcucuuu ggggcuuaggaaaugugg ggggcuuaggaaaugugguuaucuuauuggugugccaggcauuugacuaggcucuuu NW_017739039.1:498987..499044:+
RSI_20_2403 1.0 64 64 0 0 yes blast auuugggggcucguccgggau cccaccuacgggccuucaucagu auuugggggcucguccgggauugaaggagagguaaauauuaucuguaccuuucuacuugcccaccuacgggccuucaucagu NW_017738939.1:334204..334286:-
RSI_53_6700 1.0 54 54 0 0 yes blast ugaggagacagauguag gccauccucuccacugagca ugaggagacagauguagaaacagcugccauccucuccacugagca NW_017738972.1:5280795..5280840:+
RSI_513_28782 1.0 82 82 0 0 yes blast cugcgcaagcuacugccuu gaugagcuuaacggcagcgcaagg cugcgcaagcuacugccuuccauuuccaaaauauggggccuggaagaugagcuuaacggcagcgcaagg NW_017739432.1:537236..537305:+
RSI_48_5940 1.0 10 10 0 0 yes blast auauauguauguguguaugugu auauacacacauacauauuagu auauauguauguguguauguguguaucuauauauauauaucuauauauauauauguacauauauauacacacauacauauuagu NW_017738967.1:335157..335241:+
RSI_140_14012 0.9 10 10 0 0 yes blast gccagggcugcagucaucug uauggcuguugaccagaggccu gccagggcugcagucaucugaaagcuugauggucugcuuccaagcauuucauauggcuguugaccagaggccu NW_017739059.1:2373963..2374036:+
RSI_120_12608 0.9 226 211 0 15 yes blast cagugcaauaguauugucaaagc gcucugacuuuauugcacuacu gcucugacuuuauugcacuacuguacuuuacagcuagcagugcaauaguauugucaaagc NW_017739039.1:2427073..2427133:-
RSI_60246_36445 0.9 152 152 0 0 yes blast ugugugugugugugugugugu gcccacccaugcgcaugcgca ugugugugugugugugugugugugugugcccacccaugcgcaugcgca NW_017799165.1:26..74:-
RSI_687_32285 0.9 14 14 0 0 yes blast cggggcggggccggggcggg uaccagggcggggcuugggg uaccagggcggggcuugggggcggggccggggcggggccggggcggg NW_017739606.1:136933..136980:+
RSI_127_13250 0.9 10 10 0 0 yes blast uguguauguauguguauauaug uauguguauauauauauaugug uguguauguauguguauauauguauauauguguauauauauauaugug NW_017739046.1:7765066..7765114:+
RSI_38_4578 0.9 19 19 0 0 yes blast cugauguccuuggcagg agucaauggacauuguua cugauguccuuggcaggcugucucacuagguguccugucccuuauugcuugugcuaugugugcagccagucaauggacauuguua NW_017738957.1:2101861..2101946:+
RSI_60_7410 0.8 24 24 0 0 yes blast cagacuggccaggcacccc ugagccugagcccugac cagacuggccaggcaccccuuugaaugagccgaugcucaagugagccugagcccugac NW_017738979.1:8119740..8119798:+
RSI_113_12090 0.8 6 5 0 1 no blast ucaacaaaaucacugaugcuggagu ucagcaccaggauauuguuggaga ucaacaaaaucacugaugcuggaguugcgugugucaucacucagcaccaggauauuguuggaga NW_017739032.1:2746665..2746729:+
RSI_928_34452 0.7 283 283 0 0 yes blast gauugugagcuccaggaa ccuggucaucuucauaauucca gauugugagcuccaggaaagcagggauguggccuguccuggucaucuucauaauucca NW_017739847.1:508027..508085:+
RSI_370_25012 0.7 106 106 0 0 yes blast gagguaguagguuguaua gacaguuuauuguaaucaa gagguaguagguuguauaugacaguuuauuguaaucaa NW_017739289.1:61448..61486:+
RSI_31_3805 0.7 103 103 0 0 yes blast agugguucucaaccuuggcugc accuaggaaacuuugaaaacuacuga agugguucucaaccuuggcugcacacugauaucaccuaggaaacuuugaaaacuacuga NW_017738950.1:4777839..4777898:-
RSI_105_11412 0.7 162 162 0 0 yes blast ucgggcugggguggggggug ccgauagacccugguggcu ccgauagacccugguggcugugaugccaacacggcauuagugggcaagagucgggcugggguggggggug NW_017739024.1:536929..536999:-
RSI_273_21471 0.7 11 11 0 0 yes blast ugugugcgggugugggggg cuuuuguacagaca ugugugcggguguggggggguguauuaucccuuuuguacagaca NW_017739192.1:1750967..1751011:-
RSI_352_24452 0.7 13 13 0 0 yes blast aaggucgcugguucguuucc acaugggccagugagcugca aaggucgcugguucguuucccacaugggccagugagcugca NW_017739271.1:115981..116022:+
RSI_113_12120 0.7 18 18 0 0 yes blast acggccgggccugggacug gccacacuccccccuccguaa gccacacuccccccuccguaaaauaacccacucaucucaggcccaucagagccgggauuuacggccgggccugggacug NW_017739032.1:1648276..1648355:-
RSI_50_6273 0.7 32 32 0 0 yes blast aggaagggagagggagagag caaucccucuacucugacguu aggaagggagagggagagagauucuguguugaaugggaggagacugacaaucccucuacucugacguu NW_017738969.1:1558166..1558234:-
RSI_95_10354 0.6 40 40 0 0 yes blast ucuggcuguuguggugugcaa gccacacugcaacaccuuaca ucuggcuguuguggugugcaaaacuccguacauuguuauuuugccacacugcaacaccuuaca NW_017739014.1:3421004..3421067:+
RSI_163_15618 0.6 11103 11103 0 0 yes blast cuacugcauuugacuag ggucauaaugacuggcuu cuacugcauuugacuagauguuaaacaucuggucauaaugacuggcuu NW_017739082.1:2765206..2765254:+
RSI_8_1062 0.5 8 7 0 1 yes blast caggcuggggcgggggugg ugcucuggcuggcuggg ugcucuggcuggcuggguccuggagacaaggacacacccagccagcaggcuggggcgggggugg NW_017738927.1:4799428..4799492:-
RSI_1268_35298 0.5 9 9 0 0 yes blast uccuccugcugcucucggg cagagccggagagggug cagagccggagagggugggucaugggccccagaacccuccuccugcugcucucggg NW_017740187.1:36274..36330:-
RSI_222_18823 0.4 1092 1092 0 0 yes blast uguaaugguuagcacucuggacu ucuuaugugacucaugcuauuauauc uguaaugguuagcacucuggacuuugaaaaaaaaugacaaagucuuaugugacucaugcuauuauauc NW_017739141.1:95833..95901:-
RSI_642_31591 0.4 8 8 0 0 yes blast uuccuuugcccucuccugccc gcuuguggagagugggcagagguugg gcuuguggagagugggcagagguugggaguaccugaccuuggcuuucuuccuuugcccucuccugccc NW_017739561.1:298049..298117:+
RSI_65_7943 0.3 9 9 0 0 yes blast ucuuggacggugggaccucuucaga uagagggguuuuauuugucccucuuu ucuuggacggugggaccucuucagagaagaucuauuaagguagguucuuuagagggguuuuauuugucccucuuu NW_017738984.1:8924927..8925002:-
RSI_76_8805 0.3 207 170 0 37 yes blast gacuugacuggugugcggacacuu ccugcauguuagucuuagguucu ccugcauguuagucuuagguucugauggaaaugacaugcaauugugcugccauuuuuuacuauaggacuugacuggugugcggacacuu NW_017738995.1:4547803..4547892:+
RSI_354_24563 0.3 37 37 0 0 yes blast uaagaggcuaacacagaaggguaaa ugcccuuuccuguuuccuuuuaag ugcccuuuccuguuuccuuuuaaggcugacccagugucguaagaggcuaacacagaaggguaaa NW_017739273.1:1611452..1611516:+
RSI_254_20513 0.3 8 8 0 0 yes blast aagaagcuggcggcugggcuggc ggauccagccuccagugagagua aagaagcuggcggcugggcuggcaagcguggauggcgguuugcggacaguguggauccagccuccagugagagua NW_017739173.1:1199922..1199997:-
RSI_139_13963 0.3 12 12 0 0 yes blast cccugugugugugucuguguc caccaccaaucacacaggauu cccugugugugugucugugucucuucuugugaggacaccaccaaucacacaggauu NW_017739058.1:1235405..1235461:-
RSI_800_33604 0.3 581 581 0 0 yes blast aauggcgccacuaggguug accuacacagcuauacucg aauggcgccacuaggguugugcaguguacaaccuacacagcuauacucg NW_017739719.1:250188..250237:+
RSI_28_3380 0.2 98 98 0 0 yes blast cugguuaguacuuggau ccuucauuaacacaacu cugguuaguacuuggauaggagaaauauuaaaauuugcuucuuuccuucauuaacacaacu NW_017738947.1:2071010..2071071:+
RSI_20_2404 0.2 64 64 0 0 yes blast uuugggggcucguccggga ccggcacucacaaaga ccggcacucacaaagaaaauauccuauaucauuugggggcucguccggga NW_017738939.1:334266..334316:-
RSI_124_12927 0.2 7 7 0 0 yes blast ccagcguugggccccaggua caugggcccaaugcagagg caugggcccaaugcagagggugacuccuccacggggcauggccagcguugggccccaggua NW_017739043.1:1942103..1942164:+
RSI_71_8523 0.1 7 7 0 0 yes blast cccggggcugcugggcagg ugcccccgguccugguguauggc cccggggcugcugggcaggcacagaagcagaucccaucugugccgcugcugcccccgguccugguguauggc NW_017738990.1:7040676..7040748:-
RSI_251_20433 0.1 7 7 0 0 yes blast ucuuggaguaggucauugggu uggauggcuccuccaugucu ucuuggaguaggucauuggguggauccuuuauuucccuaugugggccacuggauggcuccuccaugucu NW_017739170.1:3387778..3387847:-
RSI_57_7133 0.1 8 6 0 2 yes blast accaccauuugaucuauuuuug aauuaaaucaaauggua accaccauuugaucuauuuuugauuaaaauguaaaaauuaaaaauuaaaucaaauggua NW_017738976.1:2965588..2965647:-
RSI_742_33055 0.1 22 22 0 0 yes blast ggggcagagagagagaaa uccacuauauucuguccuac uccacuauauucuguccuacuaugagagagcagcugauuuucauaaaggggcagagagagagaaa NW_017739661.1:373037..373102:+
RSI_415_26361 0.1 4 3 0 1 no blast agagcaucaagcucguguccaucg gagggcgagggcggggg agagcaucaagcucguguccaucggugagggcgcgugccgccccguggcgccgggagggcgagggcggggg NW_017739334.1:867079..867150:-
RSI_816_33730 0 9 9 0 0 yes blast uggagaacuacagcaaccu guugccuuuucuuucuc uggagaacuacagcaaccuagugucauuagguaaggacaccuucacaauugguugccuuuucuuucuc NW_017739735.1:157757..157825:+
RSI_318_23221 0 355 355 0 0 yes blast auuagguugugugguua aaugcacgacuagauga aaugcacgacuagaugagaagauugauucuaaauuauuagguugugugguua NW_017739237.1:2225638..2225690:+
RSI_480_28055 0 21 21 0 0 yes blast agaaagggagagggagagaga uuucagccacaugggcucuuucagu agaaagggagagggagagagagacuuucagccacaugggcucuuucagu NW_017739399.1:1316974..1317023:-