FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | HUH7-All_R2_clipped.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 191166151 |
| Filtered Sequences | 0 |
| Sequence length | 20-100 |
| %GC | 47 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
![[WARN]](Icons/warning.png)
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 79341350 | 3.6248534 | 5.7274475 | 2 |
| TTTTT | 75154785 | 3.3651736 | 5.561311 | 2 |
| CTGGA | 36137130 | 2.109931 | 6.2905264 | 1 |
| CTGGG | 33337895 | 2.10897 | 7.269814 | 1 |
| TCCAG | 35652215 | 2.100004 | 5.1531897 | 7 |
| CCCAG | 32352590 | 2.0913522 | 5.147066 | 1 |
| GGAAA | 32396885 | 1.7375177 | 5.3797283 | 1 |
| CCGGG | 16711550 | 1.1602017 | 5.3394775 | 1 |
| CGGGG | 16689465 | 1.1485244 | 5.325651 | 1 |