FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | R06E-All_R1_clipped.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 196510782 |
| Filtered Sequences | 0 |
| Sequence length | 20-100 |
| %GC | 48 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
![[WARN]](Icons/warning.png)
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 68859490 | 3.322409 | 7.1009383 | 2 |
| TTTTT | 70062200 | 3.2646527 | 7.4989123 | 2 |
| GAAAA | 42759715 | 2.1770422 | 5.625604 | 1 |
| CTGGA | 36025060 | 2.0306888 | 5.383461 | 1 |
| TCCAG | 35547305 | 2.006289 | 5.6135125 | 7 |
| AAAAT | 41234870 | 1.975726 | 5.330944 | 3 |
| CTGGG | 31171605 | 1.8541319 | 5.631208 | 1 |
| GGAAA | 31857980 | 1.7115638 | 5.2840414 | 1 |