FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | R06E-All_R2_clipped.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 196510782 |
| Filtered Sequences | 0 |
| Sequence length | 20-100 |
| %GC | 48 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
![[WARN]](Icons/warning.png)
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 73968080 | 3.6182568 | 6.6697807 | 2 |
| TTTTT | 73093030 | 3.444679 | 7.0332174 | 2 |
| GAAAA | 43148580 | 2.2065682 | 5.378581 | 1 |
| AAAAT | 41590855 | 2.0193727 | 5.1274786 | 3 |
| CTGGA | 36084545 | 2.0107555 | 5.759965 | 1 |
| TCCAG | 35635250 | 1.9945726 | 5.542496 | 7 |
| CTGGG | 31770200 | 1.8507758 | 6.028112 | 1 |
| GGAAA | 32473910 | 1.7361262 | 5.671261 | 1 |
| CGGGG | 21947030 | 1.3466102 | 5.2464027 | 1 |
| CCGGG | 20925810 | 1.2896754 | 5.2573347 | 1 |