hg19_v1_chr12_-_10282680_10282867	0.764564	LHX3,4.p2	AF400595|CLEC7A|64581|C-type lectin domain family 7, member A	AF400596|CLEC7A|64581|C-type lectin domain family 7, member A	AF400597|CLEC7A|64581|C-type lectin domain family 7, member A	AF400598|CLEC7A|64581|C-type lectin domain family 7, member A	AF400599|CLEC7A|64581|C-type lectin domain family 7, member A	AF400600|CLEC7A|64581|C-type lectin domain family 7, member A	AF400601|CLEC7A|64581|C-type lectin domain family 7, member A	AF400602|CLEC7A|64581|C-type lectin domain family 7, member A	AY026769|CLEC7A|64581|C-type lectin domain family 7, member A	AY026770|CLEC7A|64581|C-type lectin domain family 7, member A	AY026771|CLEC7A|64581|C-type lectin domain family 7, member A	AF313469|CLEC7A|64581|C-type lectin domain family 7, member A	BC013385|CLEC7A|64581|C-type lectin domain family 7, member A	AY009090|CLEC7A|64581|C-type lectin domain family 7, member A	AK297028|CLEC7A|64581|C-type lectin domain family 7, member A	BC093829|CLEC7A|64581|C-type lectin domain family 7, member A	BC093831|CLEC7A|64581|C-type lectin domain family 7, member A	BC071746|CLEC7A|64581|C-type lectin domain family 7, member A	AK298679|CLEC7A|64581|C-type lectin domain family 7, member A	AK298724|CLEC7A|64581|C-type lectin domain family 7, member A	AK313247|CLEC7A|64581|C-type lectin domain family 7, member A	CR749536|CLEC7A|64581|C-type lectin domain family 7, member A	AK295108|CLEC7A|64581|C-type lectin domain family 7, member A	AF313468|CLEC7A|64581|C-type lectin domain family 7, member A	AJ312372|CLEC7A|64581|C-type lectin domain family 7, member A	AJ312373|CLEC7A|64581|C-type lectin domain family 7, member A	AY359002|CLEC7A|64581|C-type lectin domain family 7, member A	AK294111|CLEC7A|64581|C-type lectin domain family 7, member A	NM_022570|CLEC7A|64581|C-type lectin domain family 7, member A	NM_197947|CLEC7A|64581|C-type lectin domain family 7, member A	NM_197948|CLEC7A|64581|C-type lectin domain family 7, member A	NM_197949|CLEC7A|64581|C-type lectin domain family 7, member A	NM_197950|CLEC7A|64581|C-type lectin domain family 7, member A	NM_197954|CLEC7A|64581|C-type lectin domain family 7, member A
hg19_v1_chr2_-_99871569_99871569	0.725042	LHX3,4.p2	NM_175735|LYG2|254773|lysozyme G-like 2
hg19_v1_chrX_-_102531673_102531796	0.696347	LHX3,4.p2	BC132922|TCEAL5|340543|transcription elongation factor A (SII)-like 5	BC132924|TCEAL5|340543|transcription elongation factor A (SII)-like 5	NM_001012979|TCEAL5|340543|transcription elongation factor A (SII)-like 5
hg19_v1_chr8_+_32785485_32785494	0.660955	LHX3,4.p2	
hg19_v1_chr12_+_109551041_109551084	0.64088	LHX3,4.p2	
hg19_v1_chr1_+_43253660_43253660	0.498452	LHX3,4.p2	NM_001242750|LOC100129924|100129924|uncharacterized LOC100129924
hg19_v1_chr2_+_27719702_27719764	0.494756	LHX3,4.p2	NM_001486|GCKR|2646|glucokinase (hexokinase 4) regulator	Z48475|GCKR|2646|glucokinase (hexokinase 4) regulator	AK298448|GCKR|2646|glucokinase (hexokinase 4) regulator	AK303784|GCKR|2646|glucokinase (hexokinase 4) regulator	AK291846|GCKR|2646|glucokinase (hexokinase 4) regulator	BC130481|GCKR|2646|glucokinase (hexokinase 4) regulator	BC130483|GCKR|2646|glucokinase (hexokinase 4) regulator	AK309599|GCKR|2646|glucokinase (hexokinase 4) regulator	HQ258318|GCKR|2646|glucokinase (hexokinase 4) regulator
hg19_v1_chr4_+_88896838_88896866	0.489813	LHX3,4.p2	BX648003|SPP1|6696|secreted phosphoprotein 1	J04765|SPP1|6696|secreted phosphoprotein 1	AK057738|SPP1|6696|secreted phosphoprotein 1	AK075463|SPP1|6696|secreted phosphoprotein 1	AK290090|SPP1|6696|secreted phosphoprotein 1	AK296035|SPP1|6696|secreted phosphoprotein 1	BC007016|SPP1|6696|secreted phosphoprotein 1	BC017387|SPP1|6696|secreted phosphoprotein 1	BC022844|SPP1|6696|secreted phosphoprotein 1	AK295491|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr4_+_88896868_88896891	0.472184	LHX3,4.p2	AK290104|SPP1|6696|secreted phosphoprotein 1	M83248|SPP1|6696|secreted phosphoprotein 1	AK315461|SPP1|6696|secreted phosphoprotein 1	AF052124|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr3_+_151591428_151591478	0.455716	LHX3,4.p2	AK290420|SUCNR1|56670|succinate receptor 1	NM_033050|SUCNR1|56670|succinate receptor 1	BC030948|SUCNR1|56670|succinate receptor 1	AF247785|SUCNR1|56670|succinate receptor 1
hg19_v1_chr10_+_91152321_91152405	0.448961	LHX3,4.p2	NM_001548|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1	BC007091|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1	AK314588|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1	AK308688|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1	X03557|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1
hg19_v1_chr5_+_147691988_147692026	0.409521	LHX3,4.p2	AF268198|SPINK7|84651|serine peptidase inhibitor, Kazal type 7 (putative)	NM_032566|SPINK7|84651|serine peptidase inhibitor, Kazal type 7 (putative)	AY359072|SPINK7|84651|serine peptidase inhibitor, Kazal type 7 (putative)	BC109385|SPINK7|84651|serine peptidase inhibitor, Kazal type 7 (putative)	BC110067|SPINK7|84651|serine peptidase inhibitor, Kazal type 7 (putative)
hg19_v1_chr12_+_54410893_54410956	0.407317	LHX3,4.p2	BC034922|HOXC5|3222|homeobox C5	BC044635|HOXC5|3222|homeobox C5	M16938|HOXC6|3223|homeobox C6	AK314829|HOXC6|3223|homeobox C6
hg19_v1_chr15_+_34261088_34261088	0.403269	LHX3,4.p2	AK095198|CHRM5|1133|cholinergic receptor, muscarinic 5	NM_012125|CHRM5|1133|cholinergic receptor, muscarinic 5
hg19_v1_chr4_+_88896899_88896928	0.380587	LHX3,4.p2	AY956318|SPP1|6696|secreted phosphoprotein 1	X13694|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr10_+_102222797_102222814	0.358058	LHX3,4.p2	Y11094|WNT8B|7479|wingless-type MMTV integration site family, member 8B	NM_003393|WNT8B|7479|wingless-type MMTV integration site family, member 8B	AB073637|WNT8B|7479|wingless-type MMTV integration site family, member 8B
hg19_v1_chr3_-_57234279_57234279	0.345977	LHX3,4.p2	NM_003865|HESX1|8820|HESX homeobox 1
hg19_v1_chrM_+_10123_10283	0.342938	LHX3,4.p2	
hg19_v1_chr10_+_695887_696016	0.338508	LHX3,4.p2	AK096000|C10orf108|414235|chromosome 10 open reading frame 108	AK296168|C10orf108|414235|chromosome 10 open reading frame 108	AK096013|C10orf108|414235|chromosome 10 open reading frame 108
hg19_v1_chr7_-_107880492_107880613	0.333621	LHX3,4.p2	AJ001057|NRCAM|4897|neuronal cell adhesion molecule	NM_001037132|NRCAM|4897|neuronal cell adhesion molecule
hg19_v1_chr3_+_73110809_73110809	0.316468	LHX3,4.p2	BC051316|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2	BC064501|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2	NM_018029|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2
hg19_v1_chr9_-_215892_215892	0.302376	LHX3,4.p2	NM_152569|C9orf66|157983|chromosome 9 open reading frame 66
hg19_v1_chr2_+_177016112_177016314	0.30036	LHX3,4.p2	NM_014621|HOXD4|3233|homeobox D4	X04706|HOXD4|3233|homeobox D4	AK313885|HOXD4|3233|homeobox D4	BC016763|HOXD4|3233|homeobox D4	BC074797|HOXD4|3233|homeobox D4
hg19_v1_chr20_-_34117447_34117480	0.295151	LHX3,4.p2	AK058089|C20orf173|140873|chromosome 20 open reading frame 173	AK310337|C20orf173|140873|chromosome 20 open reading frame 173	NM_001145350|C20orf173|140873|chromosome 20 open reading frame 173
hg19_v1_chr4_+_88896801_88896819	0.281797	LHX3,4.p2	NM_000582|SPP1|6696|secreted phosphoprotein 1	NM_001040058|SPP1|6696|secreted phosphoprotein 1	NM_001040060|SPP1|6696|secreted phosphoprotein 1	NM_001251829|SPP1|6696|secreted phosphoprotein 1	NM_001251830|SPP1|6696|secreted phosphoprotein 1	JF412667|SPP1|6696|secreted phosphoprotein 1	BC093033|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr14_-_61115906_61116274	0.279746	LHX3,4.p2	BT007083|SIX1|6495|SIX homeobox 1	BC008874|SIX1|6495|SIX homeobox 1	NM_005982|SIX1|6495|SIX homeobox 1	X91868|SIX1|6495|SIX homeobox 1
hg19_v1_chr12_-_16760935_16761147	0.269872	LHX3,4.p2	AF258348|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	BC017777|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	AB044746|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	AK095595|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	AK308826|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	NM_001001395|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	NM_001243609|LMO3|55885|LIM domain only 3 (rhombotin-like 2)
hg19_v1_chr17_+_74463629_74463686	0.262101	LHX3,4.p2	NM_001088|AANAT|15|aralkylamine N-acetyltransferase	U40347|AANAT|15|aralkylamine N-acetyltransferase	AB593119|AANAT|15|aralkylamine N-acetyltransferase	BC069434|AANAT|15|aralkylamine N-acetyltransferase
hg19_v1_chrX_-_24690740_24690978	0.255292	LHX3,4.p2	BC045634|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta	AK296333|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta	AK226121|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta	NM_001163264|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta
hg19_v1_chr5_-_137475076_137475131	0.247951	LHX3,4.p2	U90450|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	AK312181|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	AF067724|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	BC026182|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	NM_003551|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)
hg19_v1_chr1_+_244214576_244214591	0.245089	LHX3,4.p2	AK291408|ZNF238|10472|zinc finger protein 238	AK293892|ZNF238|10472|zinc finger protein 238	BC036677|ZNF238|10472|zinc finger protein 238
hg19_v1_chr5_+_59784004_59784077	0.244321	LHX3,4.p2	AL050198|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)	AK094518|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)
hg19_v1_chr11_+_99426872_99426875	0.237433	LHX3,4.p2	AB013802|CNTN5|53942|contactin 5	AB013803|CNTN5|53942|contactin 5	NM_175566|CNTN5|53942|contactin 5
hg19_v1_chr12_-_10021932_10021984	0.236722	LHX3,4.p2	X96719|CLEC2B|9976|C-type lectin domain family 2, member B	AY142147|CLEC2B|9976|C-type lectin domain family 2, member B	AB015628|CLEC2B|9976|C-type lectin domain family 2, member B	BC005254|CLEC2B|9976|C-type lectin domain family 2, member B	AK311232|CLEC2B|9976|C-type lectin domain family 2, member B	AK313916|CLEC2B|9976|C-type lectin domain family 2, member B	AK307334|CLEC2B|9976|C-type lectin domain family 2, member B
hg19_v1_chr5_+_36608430_36608563	0.225467	LHX3,4.p2	NM_001166695|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	U03504|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AY954110|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v1_chr6_-_167797917_167797997	0.222165	LHX3,4.p2	BC068592|TCP10|6953|t-complex 10 homolog (mouse)	U03399|TCP10|6953|t-complex 10 homolog (mouse)	BC063451|TCP10|6953|t-complex 10 homolog (mouse)	NM_004610|TCP10|6953|t-complex 10 homolog (mouse)
hg19_v1_chr6_+_26440699_26440780	0.216157	LHX3,4.p2	NM_001242803|BTN3A3|10384|butyrophilin, subfamily 3, member A3	NM_006994|BTN3A3|10384|butyrophilin, subfamily 3, member A3	NM_197974|BTN3A3|10384|butyrophilin, subfamily 3, member A3	AK291722|BTN3A3|10384|butyrophilin, subfamily 3, member A3	AK301553|BTN3A3|10384|butyrophilin, subfamily 3, member A3	AB209581|BTN3A3|10384|butyrophilin, subfamily 3, member A3	BC015815|BTN3A3|10384|butyrophilin, subfamily 3, member A3	AK223279|BTN3A3|10384|butyrophilin, subfamily 3, member A3	AK223301|BTN3A3|10384|butyrophilin, subfamily 3, member A3	U90548|BTN3A3|10384|butyrophilin, subfamily 3, member A3
hg19_v1_chr1_-_232651227_232651311	0.216002	LHX3,4.p2	BC006013|SIPA1L2|57568|signal-induced proliferation-associated 1 like 2	NM_020808|SIPA1L2|57568|signal-induced proliferation-associated 1 like 2	AY168879|SIPA1L2|57568|signal-induced proliferation-associated 1 like 2
hg19_v1_chr5_-_95158365_95158435	0.215549	LHX3,4.p2	AF162769|GLRX|2745|glutaredoxin (thioltransferase)	BT006689|GLRX|2745|glutaredoxin (thioltransferase)	CR450312|GLRX|2745|glutaredoxin (thioltransferase)	CR542165|GLRX|2745|glutaredoxin (thioltransferase)	DQ892497|GLRX|2745|glutaredoxin (thioltransferase)	DQ895709|GLRX|2745|glutaredoxin (thioltransferase)	D21238|GLRX|2745|glutaredoxin (thioltransferase)	AF069668|GLRX|2745|glutaredoxin (thioltransferase)	BC106075|GLRX|2745|glutaredoxin (thioltransferase)	X76648|GLRX|2745|glutaredoxin (thioltransferase)	AK311868|GLRX|2745|glutaredoxin (thioltransferase)	BC005304|GLRX|2745|glutaredoxin (thioltransferase)	BC010965|GLRX|2745|glutaredoxin (thioltransferase)
hg19_v1_chr19_-_36304200_36304200	0.214386	LHX3,4.p2	NM_021232|PRODH2|58510|proline dehydrogenase (oxidase) 2	U80018|PRODH2|58510|proline dehydrogenase (oxidase) 2
hg19_v1_chr5_+_36606667_36606790	0.214307	LHX3,4.p2	AK312304|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	BC037310|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK057823|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK293886|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	BC022285|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	BC054475|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK295032|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK295754|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	D26443|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	L19158|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v1_chr2_-_175462428_175462535	0.211265	LHX3,4.p2	BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1	X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1
hg19_v1_chr6_-_24583454_24583454	0.20987	LHX3,4.p2	AK310289|KIAA0319|9856|KIAA0319	NM_001252328|KIAA0319|9856|KIAA0319
hg19_v1_chr1_-_93342706_93342706	0.206472	LHX3,4.p2	NM_001252271|FAM69A|388650|family with sequence similarity 69, member A
hg19_v1_chr5_+_140792507_140792742	0.205443	LHX3,4.p2	BC014509|PCDHGA10|56106|protocadherin gamma subfamily A, 10	BC093873|PCDHGA10|56106|protocadherin gamma subfamily A, 10	BC093875|PCDHGA10|56106|protocadherin gamma subfamily A, 10	AF152319|PCDHGA10|56106|protocadherin gamma subfamily A, 10	AF152503|PCDHGA10|56106|protocadherin gamma subfamily A, 10	NM_018913|PCDHGA10|56106|protocadherin gamma subfamily A, 10	NM_032090|PCDHGA10|56106|protocadherin gamma subfamily A, 10
hg19_v1_chr3_+_113616317_113616402	0.200966	LHX3,4.p2	AK304142|GRAMD1C|54762|GRAM domain containing 1C	NM_001172105|GRAMD1C|54762|GRAM domain containing 1C	AY358725|GRAMD1C|54762|GRAM domain containing 1C	AK292964|GRAMD1C|54762|GRAM domain containing 1C
hg19_v1_chr2_-_99279935_99279935	0.20095	LHX3,4.p2	AK304393|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	AK309852|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	NM_001160154|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v1_chr7_-_14025826_14026138	0.200773	LHX3,4.p2	AK293802|ETV1|2115|ets variant 1	AK311134|ETV1|2115|ets variant 1	AK311194|ETV1|2115|ets variant 1	CR627389|ETV1|2115|ets variant 1	AK294572|ETV1|2115|ets variant 1	AK311707|ETV1|2115|ets variant 1	AK316007|ETV1|2115|ets variant 1	AK299693|ETV1|2115|ets variant 1	NM_001163150|ETV1|2115|ets variant 1	NM_001163151|ETV1|2115|ets variant 1	NM_001163152|ETV1|2115|ets variant 1
hg19_v1_chr12_-_53600999_53601045	0.199914	LHX3,4.p2	M68892|ITGB7|3695|integrin, beta 7	NM_000889|ITGB7|3695|integrin, beta 7	S80335|ITGB7|3695|integrin, beta 7	AK298239|ITGB7|3695|integrin, beta 7	AK301523|ITGB7|3695|integrin, beta 7	AK311703|ITGB7|3695|integrin, beta 7
hg19_v1_chr6_+_31496738_31496756	0.198738	LHX3,4.p2	NM_001011700|MCCD1|401250|mitochondrial coiled-coil domain 1	BC132994|MCCD1|401250|mitochondrial coiled-coil domain 1	BC132996|MCCD1|401250|mitochondrial coiled-coil domain 1
hg19_v1_chr1_+_244216506_244216581	0.196944	LHX3,4.p2	BC078175|ZNF238|10472|zinc finger protein 238	AJ001388|ZNF238|10472|zinc finger protein 238	NM_006352|ZNF238|10472|zinc finger protein 238
hg19_v1_chr5_+_140557370_140557370	0.196357	LHX3,4.p2	BC136801|PCDHB8|56128|protocadherin beta 8	NM_019120|PCDHB8|56128|protocadherin beta 8
hg19_v1_chr3_-_195310985_195311075	0.190193	LHX3,4.p2	NM_001647|APOD|347|apolipoprotein D
hg19_v1_chr6_+_49518112_49518112	0.181474	LHX3,4.p2	NM_001145652|C6orf141|135398|chromosome 6 open reading frame 141
hg19_v1_chrX_+_70765479_70765566	0.178567	LHX3,4.p2	AL050366|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
hg19_v1_chr8_-_62602285_62602407	0.178201	LHX3,4.p2	AF184241|ASPH|444|aspartate beta-hydroxylase	AF306765|ASPH|444|aspartate beta-hydroxylase	AF224469|ASPH|444|aspartate beta-hydroxylase	BC144362|ASPH|444|aspartate beta-hydroxylase	BC144363|ASPH|444|aspartate beta-hydroxylase	AF224468|ASPH|444|aspartate beta-hydroxylase	AK304314|ASPH|444|aspartate beta-hydroxylase	AK295528|ASPH|444|aspartate beta-hydroxylase	NM_001164750|ASPH|444|aspartate beta-hydroxylase	NM_001164751|ASPH|444|aspartate beta-hydroxylase	NM_001164752|ASPH|444|aspartate beta-hydroxylase	NM_001164753|ASPH|444|aspartate beta-hydroxylase	NM_020164|ASPH|444|aspartate beta-hydroxylase	NM_032467|ASPH|444|aspartate beta-hydroxylase	NM_032468|ASPH|444|aspartate beta-hydroxylase
hg19_v1_chr6_+_136172802_136172901	0.17709	LHX3,4.p2	AK290582|PDE7B|27115|phosphodiesterase 7B	AB038040|PDE7B|27115|phosphodiesterase 7B	NM_018945|PDE7B|27115|phosphodiesterase 7B	AJ251860|PDE7B|27115|phosphodiesterase 7B	BC070267|PDE7B|27115|phosphodiesterase 7B
hg19_v1_chrM_-_379_715	0.175562	LHX3,4.p2	
hg19_v1_chr2_+_207406815_207406857	0.174822	LHX3,4.p2	AK129906|ADAM23|8745|ADAM metallopeptidase domain 23
hg19_v1_chr16_-_67517715_67517715	0.174759	LHX3,4.p2	NM_001138|AGRP|181|agouti related protein homolog (mouse)	U88063|AGRP|181|agouti related protein homolog (mouse)
hg19_v1_chrX_-_13835187_13835203	0.173599	LHX3,4.p2	AK299675|GPM6B|2824|glycoprotein M6B	BC047295|GPM6B|2824|glycoprotein M6B
hg19_v1_chr6_+_139349818_139349857	0.171733	LHX3,4.p2	NM_021243|C6orf115|58527|chromosome 6 open reading frame 115	AF161398|C6orf115|58527|chromosome 6 open reading frame 115
hg19_v1_chr4_-_23891608_23891699	0.170367	LHX3,4.p2	AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
hg19_v1_chr2_+_210444364_210444424	0.169006	LHX3,4.p2	NM_002374|MAP2|4133|microtubule-associated protein 2	NM_031845|MAP2|4133|microtubule-associated protein 2	NM_031847|MAP2|4133|microtubule-associated protein 2	U01828|MAP2|4133|microtubule-associated protein 2	AK307603|MAP2|4133|microtubule-associated protein 2
hg19_v1_chr16_-_71610948_71610997	0.168254	LHX3,4.p2	X55675|TAT|6898|tyrosine aminotransferase	BC130534|TAT|6898|tyrosine aminotransferase	BC020707|TAT|6898|tyrosine aminotransferase	BC022292|TAT|6898|tyrosine aminotransferase	X52520|TAT|6898|tyrosine aminotransferase	AK313380|TAT|6898|tyrosine aminotransferase	NM_000353|TAT|6898|tyrosine aminotransferase
hg19_v1_chr3_-_195310770_195310891	0.166514	LHX3,4.p2	J02611|APOD|347|apolipoprotein D	BC007402|APOD|347|apolipoprotein D	AK312090|APOD|347|apolipoprotein D	AK294523|APOD|347|apolipoprotein D
hg19_v1_chr8_-_102803196_102803204	0.164667	LHX3,4.p2	AK055073|NCALD|83988|neurocalcin delta	AK314523|NCALD|83988|neurocalcin delta
hg19_v1_chr4_+_41614911_41614927	0.164095	LHX3,4.p2	AK298915|LIMCH1|22998|LIM and calponin homology domains 1	AK299297|LIMCH1|22998|LIM and calponin homology domains 1	BC068200|LIMCH1|22998|LIM and calponin homology domains 1	BX537916|LIMCH1|22998|LIM and calponin homology domains 1	CR749205|LIMCH1|22998|LIM and calponin homology domains 1	NM_001112719|LIMCH1|22998|LIM and calponin homology domains 1	NM_001112720|LIMCH1|22998|LIM and calponin homology domains 1
hg19_v1_chrX_-_13835313_13835318	0.161156	LHX3,4.p2	NM_001001995|GPM6B|2824|glycoprotein M6B	NM_001001996|GPM6B|2824|glycoprotein M6B	NM_005278|GPM6B|2824|glycoprotein M6B
hg19_v1_chr1_+_81771844_81772011	0.161	LHX3,4.p2	BC031321|LPHN2|23266|latrophilin 2	AK123422|LPHN2|23266|latrophilin 2
hg19_v1_chr8_+_92261515_92261546	0.157569	LHX3,4.p2	AJ413229|SLC26A7|115111|solute carrier family 26, member 7	NM_052832|SLC26A7|115111|solute carrier family 26, member 7	NM_134266|SLC26A7|115111|solute carrier family 26, member 7	AF331521|SLC26A7|115111|solute carrier family 26, member 7	AJ413228|SLC26A7|115111|solute carrier family 26, member 7	AJ413230|SLC26A7|115111|solute carrier family 26, member 7
hg19_v1_chr22_+_44395090_44395090	0.157154	LHX3,4.p2	AF303887|PARVB|29780|parvin, beta	NM_001003828|PARVB|29780|parvin, beta
hg19_v1_chr2_-_224866616_224866641	0.156191	LHX3,4.p2	M17783|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	DQ893191|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	DQ893684|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	DQ893685|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	DQ896516|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	DQ896862|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	DQ896863|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v1_chr5_+_36606456_36606456	0.155771	LHX3,4.p2	NM_001166696|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	NM_004172|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v1_chr20_-_18477811_18477886	0.155292	LHX3,4.p2	EU446767|RBBP9|10741|retinoblastoma binding protein 9	AL832411|RBBP9|10741|retinoblastoma binding protein 9	AF237576|RBBP9|10741|retinoblastoma binding protein 9	BC020627|RBBP9|10741|retinoblastoma binding protein 9	BC015938|RBBP9|10741|retinoblastoma binding protein 9	NM_006606|RBBP9|10741|retinoblastoma binding protein 9
hg19_v1_chr4_+_186990308_186990350	0.153733	LHX3,4.p2	BC017954|TLR3|7098|toll-like receptor 3	NM_003265|TLR3|7098|toll-like receptor 3	AK314208|TLR3|7098|toll-like receptor 3	BC068487|TLR3|7098|toll-like receptor 3	BC094737|TLR3|7098|toll-like receptor 3	BC059372|TLR3|7098|toll-like receptor 3	BC096333|TLR3|7098|toll-like receptor 3	BC096334|TLR3|7098|toll-like receptor 3	BC096335|TLR3|7098|toll-like receptor 3	DQ445682|TLR3|7098|toll-like receptor 3	U88879|TLR3|7098|toll-like receptor 3
hg19_v1_chr8_+_9953061_9953065	0.153145	LHX3,4.p2	AK293488|MSRA|4482|methionine sulfoxide reductase A	AY958430|MSRA|4482|methionine sulfoxide reductase A	AY958431|MSRA|4482|methionine sulfoxide reductase A	BC047552|MSRA|4482|methionine sulfoxide reductase A	NM_001135671|MSRA|4482|methionine sulfoxide reductase A	NM_001199729|MSRA|4482|methionine sulfoxide reductase A
hg19_v1_chr2_+_177016337_177016361	0.150431	LHX3,4.p2	
hg19_v1_chr9_+_118916069_118916071	0.148842	LHX3,4.p2	NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1
hg19_v1_chr1_+_244214552_244214560	0.147192	LHX3,4.p2	NM_205768|ZNF238|10472|zinc finger protein 238
hg19_v1_chr1_-_190446701_190446770	0.145881	LHX3,4.p2	AK123024|FAM5C|339479|family with sequence similarity 5, member C	AB111893|FAM5C|339479|family with sequence similarity 5, member C	NM_199051|FAM5C|339479|family with sequence similarity 5, member C
hg19_v1_chr19_-_36303724_36303749	0.142827	LHX3,4.p2	BC039710|PRODH2|58510|proline dehydrogenase (oxidase) 2
hg19_v1_chr14_-_71001731_71001731	0.141928	LHX3,4.p2	BC025378|ADAM20|8748|ADAM metallopeptidase domain 20	NM_003814|ADAM20|8748|ADAM metallopeptidase domain 20
hg19_v1_chr3_-_64211111_64211130	0.141765	LHX3,4.p2	BC119002|PRICKLE2|166336|prickle homolog 2 (Drosophila)	AL833539|PRICKLE2|166336|prickle homolog 2 (Drosophila)	NM_198859|PRICKLE2|166336|prickle homolog 2 (Drosophila)
hg19_v1_chr6_-_64029847_64029881	0.139216	LHX3,4.p2	DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain
hg19_v1_chr3_+_82035288_82035316	0.138818	LHX3,4.p2	
hg19_v1_chr5_+_71502700_71502827	0.138497	LHX3,4.p2	AK125194|MAP1B|4131|microtubule-associated protein 1B
hg19_v1_chr9_-_95298251_95298373	0.13809	LHX3,4.p2	AB011792|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific	AK303922|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific	AK312820|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific	AK296458|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific	BX537976|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific	NM_001197295|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific	NM_001197296|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific	NM_001393|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific
hg19_v1_chr14_+_75898836_75898836	0.137611	LHX3,4.p2	BC051303|JDP2|122953|Jun dimerization protein 2	NM_001135049|JDP2|122953|Jun dimerization protein 2
hg19_v1_chr5_-_111093792_111093914	0.13696	LHX3,4.p2	NM_001142477|C5orf13|9315|chromosome 5 open reading frame 13	NM_001142476|C5orf13|9315|chromosome 5 open reading frame 13
hg19_v1_chr6_+_31583766_31583888	0.133837	LHX3,4.p2	NM_032955|AIF1|199|allograft inflammatory factor 1	EF070982|AIF1|199|allograft inflammatory factor 1	AF299327|AIF1|199|allograft inflammatory factor 1	CR542153|AIF1|199|allograft inflammatory factor 1
hg19_v1_chrX_+_36254050_36254050	0.13339	LHX3,4.p2	NM_001098843|CXorf30|645090|chromosome X open reading frame 30
hg19_v1_chr6_+_26402464_26402581	0.132904	LHX3,4.p2	AK291162|BTN3A1|11119|butyrophilin, subfamily 3, member A1	NM_001145008|BTN3A1|11119|butyrophilin, subfamily 3, member A1	NM_001145009|BTN3A1|11119|butyrophilin, subfamily 3, member A1	NM_007048|BTN3A1|11119|butyrophilin, subfamily 3, member A1	NM_194441|BTN3A1|11119|butyrophilin, subfamily 3, member A1	AK290193|BTN3A1|11119|butyrophilin, subfamily 3, member A1	AK295720|BTN3A1|11119|butyrophilin, subfamily 3, member A1	BC118586|BTN3A1|11119|butyrophilin, subfamily 3, member A1	BC121800|BTN3A1|11119|butyrophilin, subfamily 3, member A1	AK299327|BTN3A1|11119|butyrophilin, subfamily 3, member A1	BC065567|BTN3A1|11119|butyrophilin, subfamily 3, member A1	U90552|BTN3A1|11119|butyrophilin, subfamily 3, member A1	AK298652|BTN3A1|11119|butyrophilin, subfamily 3, member A1	Y07827|BTN3A1|11119|butyrophilin, subfamily 3, member A1
hg19_v1_chr5_+_150399980_150400027	0.132167	LHX3,4.p2	NM_002084|GPX3|2878|glutathione peroxidase 3 (plasma)
hg19_v1_chr11_-_118123001_118123100	0.131994	LHX3,4.p2	HQ258603|MPZL3|196264|myelin protein zero-like 3	AY358626|MPZL3|196264|myelin protein zero-like 3	NM_198275|MPZL3|196264|myelin protein zero-like 3	AK095399|MPZL3|196264|myelin protein zero-like 3	AK289390|MPZL3|196264|myelin protein zero-like 3	AK296951|MPZL3|196264|myelin protein zero-like 3	BC031223|MPZL3|196264|myelin protein zero-like 3	AK304292|MPZL3|196264|myelin protein zero-like 3	AK310966|MPZL3|196264|myelin protein zero-like 3	BC113586|MPZL3|196264|myelin protein zero-like 3	BC143897|MPZL3|196264|myelin protein zero-like 3
hg19_v1_chr5_+_140729723_140729827	0.131607	LHX3,4.p2	AF152330|PCDHGB1|56104|protocadherin gamma subfamily B, 1	AF152517|PCDHGB1|56104|protocadherin gamma subfamily B, 1	BC103926|PCDHGB1|56104|protocadherin gamma subfamily B, 1	BC103927|PCDHGB1|56104|protocadherin gamma subfamily B, 1	BC103928|PCDHGB1|56104|protocadherin gamma subfamily B, 1	NM_018922|PCDHGB1|56104|protocadherin gamma subfamily B, 1	NM_032095|PCDHGB1|56104|protocadherin gamma subfamily B, 1
hg19_v1_chr11_-_124973204_124973204	0.131241	LHX3,4.p2	NM_001080546|TMEM218|219854|transmembrane protein 218
hg19_v1_chr5_+_96212167_96212209	0.130479	LHX3,4.p2	AK312864|ERAP2|64167|endoplasmic reticulum aminopeptidase 2	AB109031|ERAP2|64167|endoplasmic reticulum aminopeptidase 2	AB163917|ERAP2|64167|endoplasmic reticulum aminopeptidase 2	BC065240|ERAP2|64167|endoplasmic reticulum aminopeptidase 2
hg19_v1_chr8_+_98703361_98703396	0.130398	LHX3,4.p2	AK308030|MTDH|92140|metadherin
hg19_v1_chr14_-_74025643_74025650	0.129382	LHX3,4.p2	AK093515|HEATR4|399671|HEAT repeat containing 4	BC047590|HEATR4|399671|HEAT repeat containing 4	NM_001220484|HEATR4|399671|HEAT repeat containing 4	NM_203309|HEATR4|399671|HEAT repeat containing 4
hg19_v1_chr17_-_39092714_39093086	0.127633	LHX3,4.p2	AK314604|KRT23|25984|keratin 23 (histone deacetylase inducible)	DQ891640|KRT23|25984|keratin 23 (histone deacetylase inducible)	DQ894829|KRT23|25984|keratin 23 (histone deacetylase inducible)	AK002047|KRT23|25984|keratin 23 (histone deacetylase inducible)	AF102848|KRT23|25984|keratin 23 (histone deacetylase inducible)	AK289449|KRT23|25984|keratin 23 (histone deacetylase inducible)	AK310880|KRT23|25984|keratin 23 (histone deacetylase inducible)
hg19_v1_chr2_-_158300517_158300611	0.125329	LHX3,4.p2	L06633|CYTIP|9595|cytohesin 1 interacting protein	AF068836|CYTIP|9595|cytohesin 1 interacting protein	BC036449|CYTIP|9595|cytohesin 1 interacting protein	AK312753|CYTIP|9595|cytohesin 1 interacting protein	NM_004288|CYTIP|9595|cytohesin 1 interacting protein
hg19_v1_chr13_+_24463006_24463027	0.125253	LHX3,4.p2	BC015452|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)	BC073902|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)	NM_001014442|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)
hg19_v1_chr21_-_36231794_36231878	0.12499	LHX3,4.p2	S76350|RUNX1|861|runt-related transcription factor 1
hg19_v1_chr14_+_29236171_29236286	0.124525	LHX3,4.p2	X74142|FOXG1|2290|forkhead box G1	X74143|FOXG1|2290|forkhead box G1	NM_005249|FOXG1|2290|forkhead box G1
hg19_v1_chr10_+_5238756_5238834	0.122886	LHX3,4.p2	AK314988|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	BC020744|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	NM_001818|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	S68287|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	AB031085|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	AB045829|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	DQ891424|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	DQ894598|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	M33375|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)	D26125|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)
hg19_v1_chr22_+_23487512_23487697	0.121924	LHX3,4.p2	AB023061|RAB36|9609|RAB36, member RAS oncogene family	NM_004914|RAB36|9609|RAB36, member RAS oncogene family	BC104989|RAB36|9609|RAB36, member RAS oncogene family	BC104991|RAB36|9609|RAB36, member RAS oncogene family	CR456553|RAB36|9609|RAB36, member RAS oncogene family	AF133588|RAB36|9609|RAB36, member RAS oncogene family	AY336745|RAB36|9609|RAB36, member RAS oncogene family	CU013153|RAB36|9609|RAB36, member RAS oncogene family	CU013441|RAB36|9609|RAB36, member RAS oncogene family	AK296052|RAB36|9609|RAB36, member RAS oncogene family
hg19_v1_chrX_-_115594136_115594163	0.121664	LHX3,4.p2	BC062223|CXorf61|203413|chromosome X open reading frame 61	NM_001017978|CXorf61|203413|chromosome X open reading frame 61	AK000618|CXorf61|203413|chromosome X open reading frame 61	AK026566|CXorf61|203413|chromosome X open reading frame 61
hg19_v1_chr1_-_217113007_217113016	0.12028	LHX3,4.p2	AY388459|ESRRG|2104|estrogen-related receptor gamma	AY388458|ESRRG|2104|estrogen-related receptor gamma	NM_001243512|ESRRG|2104|estrogen-related receptor gamma	NM_001243513|ESRRG|2104|estrogen-related receptor gamma	AY388457|ESRRG|2104|estrogen-related receptor gamma	AY388460|ESRRG|2104|estrogen-related receptor gamma	NM_001243510|ESRRG|2104|estrogen-related receptor gamma	NM_001243511|ESRRG|2104|estrogen-related receptor gamma
hg19_v1_chr6_+_130339715_130339735	0.120214	LHX3,4.p2	AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)
hg19_v1_chr10_+_102732285_102732285	0.118568	LHX3,4.p2	NM_001203244|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	NM_017893|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
hg19_v1_chrX_-_107682600_107682726	0.117095	LHX3,4.p2	BT007228|COL4A6|1288|collagen, type IV, alpha 6	L22763|COL4A6|1288|collagen, type IV, alpha 6	U04845|COL4A6|1288|collagen, type IV, alpha 6	NM_001847|COL4A6|1288|collagen, type IV, alpha 6	BC005305|COL4A6|1288|collagen, type IV, alpha 6
hg19_v1_chr12_+_58003962_58004100	0.116822	LHX3,4.p2	AB370196|ARHGEF25|115557|Rho guanine nucleotide exchange factor (GEF) 25	NM_001111270|ARHGEF25|115557|Rho guanine nucleotide exchange factor (GEF) 25
hg19_v1_chr10_-_52008312_52008369	0.116644	LHX3,4.p2	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2	BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2	AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2	NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2	NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2
hg19_v1_chr5_+_140529619_140529838	0.116284	LHX3,4.p2	AK299661|PCDHB6|56130|protocadherin beta 6	AK313482|PCDHB6|56130|protocadherin beta 6	AF152499|PCDHB6|56130|protocadherin beta 6	AF217752|PCDHB6|56130|protocadherin beta 6	NM_018939|PCDHB6|56130|protocadherin beta 6
hg19_v1_chr8_+_107738239_107738471	0.115607	LHX3,4.p2	AK303695|OXR1|55074|oxidation resistance 1	NM_001198534|OXR1|55074|oxidation resistance 1	NM_001198535|OXR1|55074|oxidation resistance 1	AB075503|OXR1|55074|oxidation resistance 1	AK302844|OXR1|55074|oxidation resistance 1	AK316153|OXR1|55074|oxidation resistance 1	FN650109|OXR1|55074|oxidation resistance 1
hg19_v1_chr1_+_63063186_63063237	0.114341	LHX3,4.p2	NM_014495|ANGPTL3|27329|angiopoietin-like 3	AK315304|ANGPTL3|27329|angiopoietin-like 3	AK289426|ANGPTL3|27329|angiopoietin-like 3	BC007059|ANGPTL3|27329|angiopoietin-like 3	BC058287|ANGPTL3|27329|angiopoietin-like 3	AY358273|ANGPTL3|27329|angiopoietin-like 3	AF152562|ANGPTL3|27329|angiopoietin-like 3
hg19_v1_chrX_-_21776158_21776277	0.114242	LHX3,4.p2	BC005948|SMPX|23676|small muscle protein, X-linked	AF129505|SMPX|23676|small muscle protein, X-linked	AJ250584|SMPX|23676|small muscle protein, X-linked	NM_014332|SMPX|23676|small muscle protein, X-linked	AK312134|SMPX|23676|small muscle protein, X-linked
hg19_v1_chr3_+_149192367_149192437	0.112744	LHX3,4.p2	NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4
hg19_v1_chr21_-_36252872_36253000	0.112355	LHX3,4.p2	S76345|RUNX1|861|runt-related transcription factor 1	S76346|RUNX1|861|runt-related transcription factor 1
hg19_v1_chr3_+_194207685_194207919	0.111785	LHX3,4.p2	AK091527|FLJ34208|401106|uncharacterized LOC401106
hg19_v1_chrX_-_13835012_13835171	0.111656	LHX3,4.p2	AM392527|GPM6B|2824|glycoprotein M6B	AM392754|GPM6B|2824|glycoprotein M6B	AM392867|GPM6B|2824|glycoprotein M6B	AM392943|GPM6B|2824|glycoprotein M6B	AM392957|GPM6B|2824|glycoprotein M6B	AM392968|GPM6B|2824|glycoprotein M6B	AM392974|GPM6B|2824|glycoprotein M6B	AM393048|GPM6B|2824|glycoprotein M6B	AM393215|GPM6B|2824|glycoprotein M6B	AM393570|GPM6B|2824|glycoprotein M6B	AM393576|GPM6B|2824|glycoprotein M6B	AM393741|GPM6B|2824|glycoprotein M6B	AM393770|GPM6B|2824|glycoprotein M6B	AM393783|GPM6B|2824|glycoprotein M6B	AM393822|GPM6B|2824|glycoprotein M6B	DQ891541|GPM6B|2824|glycoprotein M6B	DQ894729|GPM6B|2824|glycoprotein M6B	EU832134|GPM6B|2824|glycoprotein M6B	EU832227|GPM6B|2824|glycoprotein M6B	BC008151|GPM6B|2824|glycoprotein M6B
hg19_v1_chrX_+_100354797_100354797	0.110894	LHX3,4.p2	NM_006733|CENPI|2491|centromere protein I	X97249|CENPI|2491|centromere protein I
hg19_v1_chr1_-_53608120_53608303	0.106999	LHX3,4.p2	JF917096|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	DQ892299|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	DQ895498|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	BC012119|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	BC017242|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	AB593061|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	BC000651|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	NM_006671|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	AB593059|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7	AB593060|SLC1A7|6512|solute carrier family 1 (glutamate transporter), member 7
hg19_v1_chr19_+_15838833_15838853	0.10674	LHX3,4.p2	BC112178|OR10H2|26538|olfactory receptor, family 10, subfamily H, member 2	BC113647|OR10H2|26538|olfactory receptor, family 10, subfamily H, member 2	NM_013939|OR10H2|26538|olfactory receptor, family 10, subfamily H, member 2	HQ258140|OR10H2|26538|olfactory receptor, family 10, subfamily H, member 2	BC069085|OR10H2|26538|olfactory receptor, family 10, subfamily H, member 2	BC069457|OR10H2|26538|olfactory receptor, family 10, subfamily H, member 2
hg19_v1_chr2_+_68961912_68962234	0.106078	LHX3,4.p2	NM_001007231|ARHGAP25|9938|Rho GTPase activating protein 25	NM_001166277|ARHGAP25|9938|Rho GTPase activating protein 25	AK297056|ARHGAP25|9938|Rho GTPase activating protein 25	AK310742|ARHGAP25|9938|Rho GTPase activating protein 25	AK290396|ARHGAP25|9938|Rho GTPase activating protein 25
hg19_v1_chr2_-_200213802_200213898	0.105936	LHX3,4.p2	AK025127|SATB2|23314|SATB homeobox 2
hg19_v1_chr12_+_57157091_57157131	0.105748	LHX3,4.p2	AK313423|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)	BC020710|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)	NM_003725|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)	U89281|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)	AF223225|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)
hg19_v1_chr4_+_166131170_166131187	0.104489	LHX3,4.p2	NM_001161521|KLHL2|11275|kelch-like 2, Mayven (Drosophila)	NM_001161522|KLHL2|11275|kelch-like 2, Mayven (Drosophila)	AK294103|KLHL2|11275|kelch-like 2, Mayven (Drosophila)	BX647776|KLHL2|11275|kelch-like 2, Mayven (Drosophila)
hg19_v1_chr17_-_39093671_39093835	0.102329	LHX3,4.p2	BC028356|KRT23|25984|keratin 23 (histone deacetylase inducible)	AK302109|KRT23|25984|keratin 23 (histone deacetylase inducible)	AL117538|KRT23|25984|keratin 23 (histone deacetylase inducible)	NM_015515|KRT23|25984|keratin 23 (histone deacetylase inducible)
hg19_v1_chr19_+_49199227_49199295	0.100571	LHX3,4.p2	NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)	NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)	AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)	D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)	BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)	BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)
hg19_v1_chr6_-_32908583_32908846	0.100326	LHX3,4.p2	CR407606|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	DQ891141|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	DQ894320|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	BC027175|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	Z23139|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	AB209577|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	AK315979|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	AK295872|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	AY645722|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	U15085|HLA-DMB|3109|major histocompatibility complex, class II, DM beta	NM_002118|HLA-DMB|3109|major histocompatibility complex, class II, DM beta
hg19_v1_chr2_-_134179325_134179384	0.0986764	LHX3,4.p2	AK092189|NCKAP5|344148|NCK-associated protein 5
hg19_v1_chr12_-_26277807_26278036	0.0974836	LHX3,4.p2	AY665467|BHLHE41|79365|basic helix-loop-helix family, member e41	AK303677|BHLHE41|79365|basic helix-loop-helix family, member e41	AB044088|BHLHE41|79365|basic helix-loop-helix family, member e41	BC025968|BHLHE41|79365|basic helix-loop-helix family, member e41	NM_030762|BHLHE41|79365|basic helix-loop-helix family, member e41
hg19_v1_chr12_-_10978867_10978956	0.0965281	LHX3,4.p2	BC069089|TAS2R10|50839|taste receptor, type 2, member 10	NM_023921|TAS2R10|50839|taste receptor, type 2, member 10	BC101762|TAS2R10|50839|taste receptor, type 2, member 10	BC101764|TAS2R10|50839|taste receptor, type 2, member 10
hg19_v1_chr2_+_202047620_202047620	0.0955659	LHX3,4.p2	NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase
hg19_v1_chr7_-_64023454_64023504	0.0954453	LHX3,4.p2	AK122937|ZNF680|340252|zinc finger protein 680	BC030700|ZNF680|340252|zinc finger protein 680	NM_001130022|ZNF680|340252|zinc finger protein 680	NM_178558|ZNF680|340252|zinc finger protein 680
hg19_v1_chr4_+_169418167_169418274	0.0951859	LHX3,4.p2	AF464873|PALLD|23022|palladin, cytoskeletal associated protein	NM_001166108|PALLD|23022|palladin, cytoskeletal associated protein	NM_016081|PALLD|23022|palladin, cytoskeletal associated protein	BC140850|PALLD|23022|palladin, cytoskeletal associated protein	BC144666|PALLD|23022|palladin, cytoskeletal associated protein
hg19_v1_chr9_+_12693385_12693466	0.0946396	LHX3,4.p2	NM_000550|TYRP1|7306|tyrosinase-related protein 1	X51420|TYRP1|7306|tyrosinase-related protein 1	BC052608|TYRP1|7306|tyrosinase-related protein 1
hg19_v1_chr4_+_22694547_22694638	0.0944525	LHX3,4.p2	BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)	AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)
hg19_v1_chr6_+_26087447_26087707	0.0940166	LHX3,4.p2	U60319|HFE|3077|hemochromatosis	AJ249335|HFE|3077|hemochromatosis	AJ249336|HFE|3077|hemochromatosis	AJ249337|HFE|3077|hemochromatosis	AJ249338|HFE|3077|hemochromatosis	AJ250635|HFE|3077|hemochromatosis	NM_000410|HFE|3077|hemochromatosis	NM_139003|HFE|3077|hemochromatosis	NM_139004|HFE|3077|hemochromatosis	NM_139006|HFE|3077|hemochromatosis	NM_139007|HFE|3077|hemochromatosis	NM_139008|HFE|3077|hemochromatosis	NM_139009|HFE|3077|hemochromatosis	NM_139010|HFE|3077|hemochromatosis	NM_139011|HFE|3077|hemochromatosis	AF144242|HFE|3077|hemochromatosis	AF144243|HFE|3077|hemochromatosis	AF144244|HFE|3077|hemochromatosis	AF144245|HFE|3077|hemochromatosis	BC074721|HFE|3077|hemochromatosis	AF149804|HFE|3077|hemochromatosis	AF150664|HFE|3077|hemochromatosis	AF079407|HFE|3077|hemochromatosis	AF079408|HFE|3077|hemochromatosis	AF079409|HFE|3077|hemochromatosis	BC117201|HFE|3077|hemochromatosis	BC117203|HFE|3077|hemochromatosis	BC143887|HFE|3077|hemochromatosis	AK293393|HFE|3077|hemochromatosis	AK316502|HFE|3077|hemochromatosis	AF115265|HFE|3077|hemochromatosis	AF115264|HFE|3077|hemochromatosis	AK300933|HFE|3077|hemochromatosis	HQ258197|HFE|3077|hemochromatosis	JN375754|HFE|3077|hemochromatosis
hg19_v1_chr3_-_186262114_186262166	0.0932901	LHX3,4.p2	AF161703|CRYGS|1427|crystallin, gamma S	BC069478|CRYGS|1427|crystallin, gamma S	AK314172|CRYGS|1427|crystallin, gamma S	NM_017541|CRYGS|1427|crystallin, gamma S
hg19_v1_chr5_+_166711842_166711842	0.0914235	LHX3,4.p2	NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)
hg19_v1_chr1_+_171217632_171217691	0.0910316	LHX3,4.p2	AK290113|FMO1|2326|flavin containing monooxygenase 1	AK315100|FMO1|2326|flavin containing monooxygenase 1	M64082|FMO1|2326|flavin containing monooxygenase 1	NM_002021|FMO1|2326|flavin containing monooxygenase 1	AK296198|FMO1|2326|flavin containing monooxygenase 1
hg19_v1_chr6_-_24719286_24719402	0.090036	LHX3,4.p2	AK022681|C6orf62|81688|chromosome 6 open reading frame 62	AB075502|C6orf62|81688|chromosome 6 open reading frame 62	AL136632|C6orf62|81688|chromosome 6 open reading frame 62	NM_030939|C6orf62|81688|chromosome 6 open reading frame 62
hg19_v1_chr11_-_5701371_5701461	0.0893578	LHX3,4.p2	AB362928|TRIM5|85363|tripartite motif containing 5	AY625000|TRIM5|85363|tripartite motif containing 5	DQ288685|TRIM5|85363|tripartite motif containing 5	AF220025|TRIM5|85363|tripartite motif containing 5	AF220026|TRIM5|85363|tripartite motif containing 5	AF220027|TRIM5|85363|tripartite motif containing 5	AF220028|TRIM5|85363|tripartite motif containing 5	AF220029|TRIM5|85363|tripartite motif containing 5
hg19_v1_chr13_-_99910548_99910681	0.0893168	LHX3,4.p2	AF261135|GPR18|2841|G protein-coupled receptor 18	BC050646|GPR18|2841|G protein-coupled receptor 18	AF339781|GPR18|2841|G protein-coupled receptor 18	BC008569|GPR18|2841|G protein-coupled receptor 18	NM_001098200|GPR18|2841|G protein-coupled receptor 18	NM_005292|GPR18|2841|G protein-coupled receptor 18
hg19_v1_chr21_-_27372461_27372498	0.088078	LHX3,4.p2	X06981|APP|351|amyloid beta (A4) precursor protein	X06982|APP|351|amyloid beta (A4) precursor protein
hg19_v1_chr6_+_131894343_131894422	0.087515	LHX3,4.p2	NM_000045|ARG1|383|arginase, liver	NM_001244438|ARG1|383|arginase, liver	AY074488|ARG1|383|arginase, liver	BC005321|ARG1|383|arginase, liver	M14502|ARG1|383|arginase, liver	BC020653|ARG1|383|arginase, liver	DQ892039|ARG1|383|arginase, liver	DQ895230|ARG1|383|arginase, liver	BT006741|ARG1|383|arginase, liver
hg19_v1_chr8_+_22210311_22210342	0.0871863	LHX3,4.p2	AK000397|PIWIL2|55124|piwi-like 2 (Drosophila)
hg19_v1_chr12_+_75784878_75784893	0.0865862	LHX3,4.p2	BX640916|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2	BC029557|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2	NM_152436|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2	DQ891533|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2	DQ894722|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2
hg19_v1_chr6_+_114178516_114178953	0.0865054	LHX3,4.p2	AK074526|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	NM_002356|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	BC013004|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	BC028284|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	BC068059|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	D10522|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	M68956|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	BC089040|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	EU832331|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate	EU832416|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate
hg19_v1_chr20_-_6104056_6104271	0.0859587	LHX3,4.p2	AB105105|FERMT1|55612|fermitin family member 1	NM_017671|FERMT1|55612|fermitin family member 1
hg19_v1_chr9_+_124329398_124329398	0.0858746	LHX3,4.p2	NM_032552|DAB2IP|153090|DAB2 interacting protein
hg19_v1_chr1_-_94147201_94147454	0.085794	LHX3,4.p2	U92715|BCAR3|8412|breast cancer anti-estrogen resistance 3	BC039895|BCAR3|8412|breast cancer anti-estrogen resistance 3	AF124250|BCAR3|8412|breast cancer anti-estrogen resistance 3	NM_003567|BCAR3|8412|breast cancer anti-estrogen resistance 3
hg19_v1_chr5_-_95158465_95158576	0.0843079	LHX3,4.p2	NM_001118890|GLRX|2745|glutaredoxin (thioltransferase)	NM_001243658|GLRX|2745|glutaredoxin (thioltransferase)	NM_001243659|GLRX|2745|glutaredoxin (thioltransferase)	NM_002064|GLRX|2745|glutaredoxin (thioltransferase)
hg19_v1_chr3_+_186739643_186739702	0.0842948	LHX3,4.p2	AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v1_chr10_+_18689512_18689615	0.0835519	LHX3,4.p2	NM_201570|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit	AK299873|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit	AK295113|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit
hg19_v1_chr1_+_192127591_192127616	0.0829717	LHX3,4.p2	NM_130782|RGS18|64407|regulator of G-protein signaling 18	AK292015|RGS18|64407|regulator of G-protein signaling 18	BC020632|RGS18|64407|regulator of G-protein signaling 18	AK057114|RGS18|64407|regulator of G-protein signaling 18	AK315377|RGS18|64407|regulator of G-protein signaling 18	AF268036|RGS18|64407|regulator of G-protein signaling 18	AF076642|RGS18|64407|regulator of G-protein signaling 18
hg19_v1_chr6_-_47253962_47254003	0.0816367	LHX3,4.p2	BC010241|TNFRSF21|27242|tumor necrosis factor receptor superfamily, member 21
hg19_v1_chr12_+_18414473_18414473	0.0806977	LHX3,4.p2	NM_004570|PIK3C2G|5288|phosphoinositide-3-kinase, class 2, gamma polypeptide
hg19_v1_chr2_+_202047803_202047917	0.0792022	LHX3,4.p2	AK310746|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	U86214|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	AK304859|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	AK225475|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	AY690601|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	BC042844|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	U60519|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	AJ487678|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	AJ487679|CASP10|843|caspase 10, apoptosis-related cysteine peptidase
hg19_v1_chr11_-_76998462_76998462	0.0780453	LHX3,4.p2	AY313782|GDPD4|220032|glycerophosphodiester phosphodiesterase domain containing 4	AY326450|GDPD4|220032|glycerophosphodiester phosphodiesterase domain containing 4	NM_182833|GDPD4|220032|glycerophosphodiester phosphodiesterase domain containing 4
hg19_v1_chrX_+_100224696_100224696	0.0774995	LHX3,4.p2	AK301813|ARL13A|392509|ADP-ribosylation factor-like 13A	NM_001012990|ARL13A|392509|ADP-ribosylation factor-like 13A	NM_001162490|ARL13A|392509|ADP-ribosylation factor-like 13A	NM_001162491|ARL13A|392509|ADP-ribosylation factor-like 13A
hg19_v1_chr9_+_79093256_79093256	0.0772153	LHX3,4.p2	AY196296|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2	NM_001097635|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2
hg19_v1_chr3_+_136649316_136649358	0.0769997	LHX3,4.p2	NM_001190796|NCK1|4690|NCK adaptor protein 1	AK301460|NCK1|4690|NCK adaptor protein 1
hg19_v1_chr18_+_28956739_28956874	0.0753266	LHX3,4.p2	AY177664|DSG4|147409|desmoglein 4	NM_001134453|DSG4|147409|desmoglein 4	NM_177986|DSG4|147409|desmoglein 4	AY168788|DSG4|147409|desmoglein 4	AY228236|DSG4|147409|desmoglein 4	BC132907|DSG4|147409|desmoglein 4	BC132909|DSG4|147409|desmoglein 4	AY227350|DSG4|147409|desmoglein 4
hg19_v1_chr2_-_167343477_167343480	0.0745107	LHX3,4.p2	BC141864|SCN7A|6332|sodium channel, voltage-gated, type VII, alpha	M91556|SCN7A|6332|sodium channel, voltage-gated, type VII, alpha	NM_002976|SCN7A|6332|sodium channel, voltage-gated, type VII, alpha
hg19_v1_chr4_+_41614933_41615091	0.0737862	LHX3,4.p2	AK299835|LIMCH1|22998|LIM and calponin homology domains 1
hg19_v1_chr3_-_168865521_168865521	0.0737208	LHX3,4.p2	BX640908|MECOM|2122|MDS1 and EVI1 complex locus	NM_001164000|MECOM|2122|MDS1 and EVI1 complex locus
hg19_v1_chr8_-_108510094_108510282	0.0731857	LHX3,4.p2	U83508|ANGPT1|284|angiopoietin 1	BC152411|ANGPT1|284|angiopoietin 1	BC152419|ANGPT1|284|angiopoietin 1	D13628|ANGPT1|284|angiopoietin 1	AY055342|ANGPT1|284|angiopoietin 1	NM_001146|ANGPT1|284|angiopoietin 1	NM_001199859|ANGPT1|284|angiopoietin 1	BX648814|ANGPT1|284|angiopoietin 1
hg19_v1_chr10_+_17270257_17270257	0.072682	LHX3,4.p2	NM_003380|VIM|7431|vimentin
hg19_v1_chr12_-_56756526_56756606	0.0725165	LHX3,4.p2	L27050|APOF|319|apolipoprotein F	AK314892|APOF|319|apolipoprotein F	BC026257|APOF|319|apolipoprotein F	NM_001638|APOF|319|apolipoprotein F	CR936663|APOF|319|apolipoprotein F
hg19_v1_chr4_-_146859960_146859976	0.0722765	LHX3,4.p2	
hg19_v1_chrX_-_24665225_24665425	0.0715901	LHX3,4.p2	AF148464|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta	AF052510|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta
hg19_v1_chr4_+_41614725_41614803	0.0712208	LHX3,4.p2	AK294774|LIMCH1|22998|LIM and calponin homology domains 1
hg19_v1_chrX_+_41548225_41548310	0.0701348	LHX3,4.p2	AK027780|GPR34|2857|G protein-coupled receptor 34	NM_001097579|GPR34|2857|G protein-coupled receptor 34	NM_005300|GPR34|2857|G protein-coupled receptor 34	DQ106398|GPR34|2857|G protein-coupled receptor 34	DQ106400|GPR34|2857|G protein-coupled receptor 34	BC020678|GPR34|2857|G protein-coupled receptor 34	DQ106399|GPR34|2857|G protein-coupled receptor 34	DQ106401|GPR34|2857|G protein-coupled receptor 34	DQ106402|GPR34|2857|G protein-coupled receptor 34	AK075217|GPR34|2857|G protein-coupled receptor 34
hg19_v1_chr8_+_132991171_132991247	0.069661	LHX3,4.p2	BX648595|EFR3A|23167|EFR3 homolog A (S. cerevisiae)
hg19_v1_chr13_+_50760015_50760091	0.0694001	LHX3,4.p2	
hg19_v1_chr7_+_77469446_77469572	0.0688739	LHX3,4.p2	BC022419|PHTF2|57157|putative homeodomain transcription factor 2	NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2	NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2	NM_020432|PHTF2|57157|putative homeodomain transcription factor 2	AL831969|PHTF2|57157|putative homeodomain transcription factor 2	BC127093|PHTF2|57157|putative homeodomain transcription factor 2	BC127094|PHTF2|57157|putative homeodomain transcription factor 2	AM392983|PHTF2|57157|putative homeodomain transcription factor 2	AM393200|PHTF2|57157|putative homeodomain transcription factor 2
hg19_v1_chr12_+_26348488_26348683	0.0677269	LHX3,4.p2	AK304667|SSPN|8082|sarcospan (Kras oncogene-associated gene)	NM_005086|SSPN|8082|sarcospan (Kras oncogene-associated gene)	AK314353|SSPN|8082|sarcospan (Kras oncogene-associated gene)	AL136756|SSPN|8082|sarcospan (Kras oncogene-associated gene)	BC062299|SSPN|8082|sarcospan (Kras oncogene-associated gene)	AM392675|SSPN|8082|sarcospan (Kras oncogene-associated gene)	AM392714|SSPN|8082|sarcospan (Kras oncogene-associated gene)	AF016028|SSPN|8082|sarcospan (Kras oncogene-associated gene)	DQ897666|SSPN|8082|sarcospan (Kras oncogene-associated gene)	EU433933|SSPN|8082|sarcospan (Kras oncogene-associated gene)	X89105|SSPN|8082|sarcospan (Kras oncogene-associated gene)
hg19_v1_chr5_+_140247767_140247830	0.0676108	LHX3,4.p2	BC136706|PCDHA11|56138|protocadherin alpha 11	AJ007609|PCDHA11|56138|protocadherin alpha 11	NM_018902|PCDHA11|56138|protocadherin alpha 11	NM_031861|PCDHA11|56138|protocadherin alpha 11
hg19_v1_chr12_+_131438451_131438455	0.0675015	LHX3,4.p2	BX649116|GPR133|283383|G protein-coupled receptor 133	NM_198827|GPR133|283383|G protein-coupled receptor 133
hg19_v1_chr12_+_64798050_64798443	0.0673582	LHX3,4.p2	NM_007235|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)	AK308108|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)	AK292884|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)
hg19_v1_chr17_-_67057046_67057135	0.0671591	LHX3,4.p2	BC062472|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9	AK057068|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9	AY028899|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9	NM_080283|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9
hg19_v1_chr1_+_97260515_97260652	0.0664812	LHX3,4.p2	
hg19_v1_chr8_-_102803438_102803438	0.0664777	LHX3,4.p2	NM_032041|NCALD|83988|neurocalcin delta
hg19_v1_chr3_-_129599220_129599401	0.0661338	LHX3,4.p2	AK291448|TMCC1|23023|transmembrane and coiled-coil domain family 1	BC039859|TMCC1|23023|transmembrane and coiled-coil domain family 1	NM_001017395|TMCC1|23023|transmembrane and coiled-coil domain family 1
hg19_v1_chr12_-_58135853_58135943	0.0658963	LHX3,4.p2	AF413077|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	BC028020|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	AK292672|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	AF384128|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	D79989|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	NM_014770|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
hg19_v1_chr2_+_88047603_88047635	0.0658443	LHX3,4.p2	BC022294|PLGLB2|5342|plasminogen-like B2	M93143|PLGLB2|5342|plasminogen-like B2	NM_002665|PLGLB2|5342|plasminogen-like B2	BC005379|PLGLB2|5342|plasminogen-like B2	NM_001032392|PLGLB1|5343|plasminogen-like B1	BC070296|PLGLB1|5343|plasminogen-like B1	BC109248|PLGLB1|5343|plasminogen-like B1	BC107767|PLGLB1|5343|plasminogen-like B1
hg19_v1_chr3_+_159943252_159943422	0.0657645	LHX3,4.p2	NM_001168214|C3orf80|401097|chromosome 3 open reading frame 80
hg19_v1_chr1_-_144997110_144997110	0.0649787	LHX3,4.p2	NM_001195260|PDE4DIP|9659|phosphodiesterase 4D interacting protein
hg19_v1_chr6_-_53013581_53013626	0.0649435	LHX3,4.p2	BC096288|GCM1|8521|glial cells missing homolog 1 (Drosophila)	BC096289|GCM1|8521|glial cells missing homolog 1 (Drosophila)	AK309881|GCM1|8521|glial cells missing homolog 1 (Drosophila)	NM_003643|GCM1|8521|glial cells missing homolog 1 (Drosophila)	D88613|GCM1|8521|glial cells missing homolog 1 (Drosophila)
hg19_v1_chr2_+_166326156_166326212	0.06481	LHX3,4.p2	AK126129|CSRNP3|80034|cysteine-serine-rich nuclear protein 3	NM_001172173|CSRNP3|80034|cysteine-serine-rich nuclear protein 3
hg19_v1_chr13_-_34250899_34250972	0.0647129	LHX3,4.p2	BX647695|STARD13|90627|StAR-related lipid transfer (START) domain containing 13	NM_001243476|STARD13|90627|StAR-related lipid transfer (START) domain containing 13
hg19_v1_chr20_+_5987897_5987901	0.0646043	LHX3,4.p2	NM_001127458|CRLS1|54675|cardiolipin synthase 1	AK310368|CRLS1|54675|cardiolipin synthase 1
hg19_v1_chr2_-_288181_288307	0.0644734	LHX3,4.p2	BC033490|FAM150B|285016|family with sequence similarity 150, member B	NM_001002919|FAM150B|285016|family with sequence similarity 150, member B
hg19_v1_chr8_-_124749573_124749665	0.0642142	LHX3,4.p2	CR541838|ANXA13|312|annexin A13	BC125158|ANXA13|312|annexin A13	AJ306450|ANXA13|312|annexin A13	Z11502|ANXA13|312|annexin A13	NM_001003954|ANXA13|312|annexin A13	NM_004306|ANXA13|312|annexin A13	AK290281|ANXA13|312|annexin A13	AK223374|ANXA13|312|annexin A13
hg19_v1_chr4_-_46125929_46126097	0.0641592	LHX3,4.p2	DQ890976|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1	DQ894150|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1	CR933628|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1	BC031087|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1	AK289806|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1	AK299884|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1	BX648937|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1	NM_173536|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1	AK122845|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1
hg19_v1_chr5_-_58882274_58882324	0.0638688	LHX3,4.p2	U50159|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	NM_006203|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	L20970|PDE4D|5144|phosphodiesterase 4D, cAMP-specific
hg19_v1_chr3_-_55514933_55514955	0.0635903	LHX3,4.p2	BC074783|WNT5A|7474|wingless-type MMTV integration site family, member 5A
hg19_v1_chr22_-_38881529_38881541	0.0632798	LHX3,4.p2	BC045747|DDX17|10521|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
hg19_v1_chr4_+_88754120_88754139	0.0627023	LHX3,4.p2	AK307774|MEPE|56955|matrix extracellular phosphoglycoprotein	NM_001184695|MEPE|56955|matrix extracellular phosphoglycoprotein	NM_001184696|MEPE|56955|matrix extracellular phosphoglycoprotein	NM_001184697|MEPE|56955|matrix extracellular phosphoglycoprotein	NM_020203|MEPE|56955|matrix extracellular phosphoglycoprotein	AJ276396|MEPE|56955|matrix extracellular phosphoglycoprotein	BC128158|MEPE|56955|matrix extracellular phosphoglycoprotein	AF325916|MEPE|56955|matrix extracellular phosphoglycoprotein
hg19_v1_chr21_-_43346780_43346798	0.0625589	LHX3,4.p2	BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2	AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2	NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2
hg19_v1_chr9_+_97521930_97522065	0.0622654	LHX3,4.p2	NM_001193329|C9orf3|84909|chromosome 9 open reading frame 3	AJ560639|C9orf3|84909|chromosome 9 open reading frame 3
hg19_v1_chr6_+_26365397_26365508	0.0620732	LHX3,4.p2	NM_001197247|BTN3A2|11118|butyrophilin, subfamily 3, member A2	NM_001197249|BTN3A2|11118|butyrophilin, subfamily 3, member A2	NM_007047|BTN3A2|11118|butyrophilin, subfamily 3, member A2	AK312847|BTN3A2|11118|butyrophilin, subfamily 3, member A2	AK290880|BTN3A2|11118|butyrophilin, subfamily 3, member A2	U90546|BTN3A2|11118|butyrophilin, subfamily 3, member A2	AK303600|BTN3A2|11118|butyrophilin, subfamily 3, member A2	NM_001197248|BTN3A2|11118|butyrophilin, subfamily 3, member A2	BC002832|BTN3A2|11118|butyrophilin, subfamily 3, member A2	BC020214|BTN3A2|11118|butyrophilin, subfamily 3, member A2	AK299417|BTN3A2|11118|butyrophilin, subfamily 3, member A2
hg19_v1_chr6_+_25754926_25754973	0.0620572	LHX3,4.p2	AK024903|SLC17A4|10050|solute carrier family 17 (sodium phosphate), member 4	NM_005495|SLC17A4|10050|solute carrier family 17 (sodium phosphate), member 4	AK293354|SLC17A4|10050|solute carrier family 17 (sodium phosphate), member 4
hg19_v1_chr13_-_96294282_96294404	0.0620312	LHX3,4.p2	AF272347|DZIP1|22873|DAZ interacting protein 1	AF272348|DZIP1|22873|DAZ interacting protein 1
hg19_v1_chr10_-_29923900_29923914	0.061628	LHX3,4.p2	AF109135|SVIL|6840|supervillin	NM_021738|SVIL|6840|supervillin
hg19_v1_chr9_+_130026755_130026860	0.0612743	LHX3,4.p2	NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3	AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3	AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3
hg19_v1_chr6_-_87804773_87804864	0.0609328	LHX3,4.p2	V00518|CGA|1081|glycoprotein hormones, alpha polypeptide	AK311972|CGA|1081|glycoprotein hormones, alpha polypeptide	BC055080|CGA|1081|glycoprotein hormones, alpha polypeptide	BC010957|CGA|1081|glycoprotein hormones, alpha polypeptide	BC020782|CGA|1081|glycoprotein hormones, alpha polypeptide	NM_000735|CGA|1081|glycoprotein hormones, alpha polypeptide	NM_001252383|CGA|1081|glycoprotein hormones, alpha polypeptide
hg19_v1_chr15_-_41166336_41166558	0.0608045	LHX3,4.p2	AY059636|RHOV|171177|ras homolog gene family, member V	BC112945|RHOV|171177|ras homolog gene family, member V	BC019353|RHOV|171177|ras homolog gene family, member V	BC105020|RHOV|171177|ras homolog gene family, member V	BC105022|RHOV|171177|ras homolog gene family, member V	AB079131|RHOV|171177|ras homolog gene family, member V	NM_133639|RHOV|171177|ras homolog gene family, member V
hg19_v1_chr10_-_61900659_61900773	0.060627	LHX3,4.p2	AK292927|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	AK092527|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	NM_001149|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v1_chr8_+_17396285_17396392	0.0605768	LHX3,4.p2	NM_001164771|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	NM_003046|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	BC069648|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	BC104905|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	BC113661|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	BC143583|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
hg19_v1_chr17_+_28268622_28268786	0.0604814	LHX3,4.p2	NM_198529|EFCAB5|374786|EF-hand calcium binding domain 5	BX648689|EFCAB5|374786|EF-hand calcium binding domain 5	BC137519|EFCAB5|374786|EF-hand calcium binding domain 5
hg19_v1_chr1_+_198608216_198608234	0.0598322	LHX3,4.p2	AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C
hg19_v1_chr6_-_13408368_13408368	0.0597162	LHX3,4.p2	AK027010|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1	NM_001242630|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1
hg19_v1_chr11_-_31014232_31014232	0.0590368	LHX3,4.p2	BX647348|DCDC5|100506627|doublecortin domain containing 5	NM_020869|DCDC5|100506627|doublecortin domain containing 5
hg19_v1_chr20_+_42187705_42187735	0.0589272	LHX3,4.p2	BC006523|SGK2|10110|serum/glucocorticoid regulated kinase 2	BC014037|SGK2|10110|serum/glucocorticoid regulated kinase 2	AF169034|SGK2|10110|serum/glucocorticoid regulated kinase 2
hg19_v1_chr2_-_87248942_87248974	0.0588916	LHX3,4.p2	BC107767|PLGLB1|5343|plasminogen-like B1	BC109248|PLGLB1|5343|plasminogen-like B1	BC070296|PLGLB1|5343|plasminogen-like B1	BC005379|PLGLB2|5342|plasminogen-like B2	NM_001032392|PLGLB1|5343|plasminogen-like B1	M93143|PLGLB2|5342|plasminogen-like B2	NM_002665|PLGLB2|5342|plasminogen-like B2	BC022294|PLGLB2|5342|plasminogen-like B2
hg19_v1_chr12_-_16757944_16758080	0.0583078	LHX3,4.p2	AB044745|LMO3|55885|LIM domain only 3 (rhombotin-like 2)
hg19_v1_chr9_+_12774988_12775045	0.0582219	LHX3,4.p2	NM_203403|C9orf150|286343|chromosome 9 open reading frame 150	AB073606|C9orf150|286343|chromosome 9 open reading frame 150	AK095824|C9orf150|286343|chromosome 9 open reading frame 150	BC036923|C9orf150|286343|chromosome 9 open reading frame 150
hg19_v1_chr1_+_57320442_57320574	0.0581958	LHX3,4.p2	NM_000562|C8A|731|complement component 8, alpha polypeptide	AK309596|C8A|731|complement component 8, alpha polypeptide	BC020702|C8A|731|complement component 8, alpha polypeptide	BC132911|C8A|731|complement component 8, alpha polypeptide	BC132913|C8A|731|complement component 8, alpha polypeptide	HQ258328|C8A|731|complement component 8, alpha polypeptide
hg19_v1_chr12_+_12223872_12223894	0.0579927	LHX3,4.p2	AK292995|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)	BC025778|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)	NM_138723|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)	AK223415|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)
hg19_v1_chr1_+_117544371_117544439	0.057453	LHX3,4.p2	AK307542|CD101|9398|CD101 molecule	NM_004258|CD101|9398|CD101 molecule	AK298237|CD101|9398|CD101 molecule	BC130327|CD101|9398|CD101 molecule	BC136484|CD101|9398|CD101 molecule	BC171768|CD101|9398|CD101 molecule	Z33642|CD101|9398|CD101 molecule
hg19_v1_chr5_-_156485969_156485969	0.0572525	LHX3,4.p2	AF043724|HAVCR1|26762|hepatitis A virus cellular receptor 1	NM_001173393|HAVCR1|26762|hepatitis A virus cellular receptor 1
hg19_v1_chr6_+_27777713_27777851	0.0568805	LHX3,4.p2	BC007518|HIST1H3H|8357|histone cluster 1, H3h	AK311991|HIST1H3H|8357|histone cluster 1, H3h	NM_003536|HIST1H3H|8357|histone cluster 1, H3h	EU446975|HIST1H3H|8357|histone cluster 1, H3h	BC096128|HIST1H3H|8357|histone cluster 1, H3h	BC096129|HIST1H3H|8357|histone cluster 1, H3h	BC096130|HIST1H3H|8357|histone cluster 1, H3h	BC143046|HIST1H3H|8357|histone cluster 1, H3h	BC148243|HIST1H3H|8357|histone cluster 1, H3h	BC148250|HIST1H3H|8357|histone cluster 1, H3h
hg19_v1_chr9_-_86082656_86082663	0.0567907	LHX3,4.p2	NM_001244960|FRMD3|257019|FERM domain containing 3	AY137774|FRMD3|257019|FERM domain containing 3
hg19_v1_chr1_+_203595897_203595922	0.0560798	LHX3,4.p2	NM_001001396|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4	NM_001684|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4
hg19_v1_chr8_+_26435920_26435934	0.0560755	LHX3,4.p2	NM_001244604|DPYSL2|1808|dihydropyrimidinase-like 2	AK299077|DPYSL2|1808|dihydropyrimidinase-like 2
hg19_v1_chr2_-_188312872_188313020	0.055951	LHX3,4.p2	DQ280491|CALCRL|10203|calcitonin receptor-like	U17473|CALCRL|10203|calcitonin receptor-like	L76380|CALCRL|10203|calcitonin receptor-like	AK291630|CALCRL|10203|calcitonin receptor-like	AK292998|CALCRL|10203|calcitonin receptor-like	NM_005795|CALCRL|10203|calcitonin receptor-like
hg19_v1_chr6_-_49712055_49712167	0.0557691	LHX3,4.p2	BC069602|CRISP3|10321|cysteine-rich secretory protein 3	X95240|CRISP3|10321|cysteine-rich secretory protein 3	AK223380|CRISP3|10321|cysteine-rich secretory protein 3	X94323|CRISP3|10321|cysteine-rich secretory protein 3	AK303966|CRISP3|10321|cysteine-rich secretory protein 3	AK313387|CRISP3|10321|cysteine-rich secretory protein 3	AK292786|CRISP3|10321|cysteine-rich secretory protein 3	NM_001190986|CRISP3|10321|cysteine-rich secretory protein 3	NM_006061|CRISP3|10321|cysteine-rich secretory protein 3
hg19_v1_chr10_-_94003002_94003037	0.0554942	LHX3,4.p2	AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3	NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3
hg19_v1_chr8_-_38326351_38326351	0.0554851	LHX3,4.p2	FJ809916|FGFR1|2260|fibroblast growth factor receptor 1	FJ809917|FGFR1|2260|fibroblast growth factor receptor 1	NM_001174063|FGFR1|2260|fibroblast growth factor receptor 1	NM_001174064|FGFR1|2260|fibroblast growth factor receptor 1	NM_015850|FGFR1|2260|fibroblast growth factor receptor 1	NM_023105|FGFR1|2260|fibroblast growth factor receptor 1	NM_023106|FGFR1|2260|fibroblast growth factor receptor 1	NM_023110|FGFR1|2260|fibroblast growth factor receptor 1
hg19_v1_chr9_-_15250113_15250197	0.0553915	LHX3,4.p2	AK301427|TTC39B|158219|tetratricopeptide repeat domain 39B	NM_001168342|TTC39B|158219|tetratricopeptide repeat domain 39B
hg19_v1_chr3_-_71778268_71778268	0.0536574	LHX3,4.p2	NM_001134650|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3
hg19_v1_chr6_+_42989374_42989401	0.053274	LHX3,4.p2	AK313816|RRP36|88745|ribosomal RNA processing 36 homolog (S. cerevisiae)	BC006293|RRP36|88745|ribosomal RNA processing 36 homolog (S. cerevisiae)	BC011933|RRP36|88745|ribosomal RNA processing 36 homolog (S. cerevisiae)	NM_033112|RRP36|88745|ribosomal RNA processing 36 homolog (S. cerevisiae)
hg19_v1_chr1_+_145487301_145487445	0.0525528	LHX3,4.p2	CR627381|LIX1L|128077|Lix1 homolog (mouse)-like
hg19_v1_chr4_-_2230957_2230957	0.0524705	LHX3,4.p2	AY136549|POLN|353497|polymerase (DNA directed) nu	NM_181808|POLN|353497|polymerase (DNA directed) nu
hg19_v1_chr9_-_75567915_75567976	0.0524196	LHX3,4.p2	AF003341|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	AY390731|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	BT006921|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	DQ890669|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	DQ893850|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	BC001505|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	AB209821|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	AK000118|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	AK026641|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1	AK302168|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1
hg19_v1_chr1_+_84630575_84630648	0.0521725	LHX3,4.p2	AY927366|PRKACB|5567|protein kinase, cAMP-dependent, catalytic, beta	AY927367|PRKACB|5567|protein kinase, cAMP-dependent, catalytic, beta	AY927368|PRKACB|5567|protein kinase, cAMP-dependent, catalytic, beta	AK091420|PRKACB|5567|protein kinase, cAMP-dependent, catalytic, beta	NM_001242860|PRKACB|5567|protein kinase, cAMP-dependent, catalytic, beta	NM_001242861|PRKACB|5567|protein kinase, cAMP-dependent, catalytic, beta
hg19_v1_chr3_-_157213138_157213294	0.0520904	LHX3,4.p2	HQ258524|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)	AL713656|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)	BC101660|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)	BC113555|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_001167917|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)
hg19_v1_chr1_-_35450928_35450951	0.0519076	LHX3,4.p2	NM_001195156|ZMYM6NB|100506144|ZMYM6 neighbor
hg19_v1_chr14_+_95027760_95027841	0.0518468	LHX3,4.p2	AK309586|SERPINA4|5267|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4	AK313196|SERPINA4|5267|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4	BC014992|SERPINA4|5267|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4	NM_006215|SERPINA4|5267|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4	BX248760|SERPINA4|5267|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4	BX248009|SERPINA4|5267|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4
hg19_v1_chr12_-_46633551_46633675	0.051463	LHX3,4.p2	AK074851|SLC38A1|81539|solute carrier family 38, member 1	DQ891017|SLC38A1|81539|solute carrier family 38, member 1	EU176550|SLC38A1|81539|solute carrier family 38, member 1	AK074949|SLC38A1|81539|solute carrier family 38, member 1	AK313731|SLC38A1|81539|solute carrier family 38, member 1
hg19_v1_chr1_-_205744543_205744614	0.0513632	LHX3,4.p2	BC002585|RAB7L1|8934|RAB7, member RAS oncogene family-like 1	BX647960|RAB7L1|8934|RAB7, member RAS oncogene family-like 1	AK308359|RAB7L1|8934|RAB7, member RAS oncogene family-like 1	AK311085|RAB7L1|8934|RAB7, member RAS oncogene family-like 1	AK313000|RAB7L1|8934|RAB7, member RAS oncogene family-like 1	NM_001135662|RAB7L1|8934|RAB7, member RAS oncogene family-like 1	NM_001135663|RAB7L1|8934|RAB7, member RAS oncogene family-like 1	NM_001135664|RAB7L1|8934|RAB7, member RAS oncogene family-like 1	NM_003929|RAB7L1|8934|RAB7, member RAS oncogene family-like 1
hg19_v1_chr2_+_103378489_103378676	0.0513295	LHX3,4.p2	CR936735|TMEM182|130827|transmembrane protein 182	NM_144632|TMEM182|130827|transmembrane protein 182	CR936731|TMEM182|130827|transmembrane protein 182	CR936732|TMEM182|130827|transmembrane protein 182	AK129862|TMEM182|130827|transmembrane protein 182	BC130306|TMEM182|130827|transmembrane protein 182	BC130308|TMEM182|130827|transmembrane protein 182	HQ258113|TMEM182|130827|transmembrane protein 182
hg19_v1_chr5_+_69321071_69321259	0.0513027	LHX3,4.p2	NM_021967|SERF1A|8293|small EDRK-rich factor 1A (telomeric)	NM_022968|SERF1A|8293|small EDRK-rich factor 1A (telomeric)	BC021174|SERF1A|8293|small EDRK-rich factor 1A (telomeric)	NM_001178087|SERF1B|728492|small EDRK-rich factor 1B (centromeric)	NM_022978|SERF1B|728492|small EDRK-rich factor 1B (centromeric)	AF073519|SERF1A|8293|small EDRK-rich factor 1A (telomeric)	AF073518|SERF1A|8293|small EDRK-rich factor 1A (telomeric)	BC035932|SERF1A|8293|small EDRK-rich factor 1A (telomeric)	BC093880|SERF1A|8293|small EDRK-rich factor 1A (telomeric)	BC171749|SERF1B|728492|small EDRK-rich factor 1B (centromeric)	BC101970|SERF1B|728492|small EDRK-rich factor 1B (centromeric)	BC103687|SERF1B|728492|small EDRK-rich factor 1B (centromeric)	BC104738|SERF1B|728492|small EDRK-rich factor 1B (centromeric)	BC143260|SERF1B|728492|small EDRK-rich factor 1B (centromeric)	BC093882|SERF1A|8293|small EDRK-rich factor 1A (telomeric)	BC143255|SERF1B|728492|small EDRK-rich factor 1B (centromeric)
hg19_v1_chr11_-_85437457_85437510	0.051264	LHX3,4.p2	BX647671|SYTL2|54843|synaptotagmin-like 2	AK127504|SYTL2|54843|synaptotagmin-like 2	NM_206927|SYTL2|54843|synaptotagmin-like 2	NM_206928|SYTL2|54843|synaptotagmin-like 2
hg19_v1_chr18_+_29027731_29027757	0.0510168	LHX3,4.p2	AK290367|DSG3|1830|desmoglein 3	NM_001944|DSG3|1830|desmoglein 3	M76482|DSG3|1830|desmoglein 3
hg19_v1_chr22_-_26961333_26961369	0.0507613	LHX3,4.p2	AK075139|TPST2|8459|tyrosylprotein sulfotransferase 2	NM_001008566|TPST2|8459|tyrosylprotein sulfotransferase 2
hg19_v1_chr5_-_58295758_58295758	0.0505858	LHX3,4.p2	BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific
hg19_v1_chr2_-_169887832_169887832	0.0505263	LHX3,4.p2	AF091582|ABCB11|8647|ATP-binding cassette, sub-family B (MDR/TAP), member 11	NM_003742|ABCB11|8647|ATP-binding cassette, sub-family B (MDR/TAP), member 11
hg19_v1_chr6_+_167525294_167525294	0.0505049	LHX3,4.p2	NM_004367|CCR6|1235|chemokine (C-C motif) receptor 6
hg19_v1_chr6_+_161123224_161123299	0.0502358	LHX3,4.p2	NM_000301|PLG|5340|plasminogen	NM_001168338|PLG|5340|plasminogen	AK308036|PLG|5340|plasminogen	AK312966|PLG|5340|plasminogen	AK298338|PLG|5340|plasminogen	X05199|PLG|5340|plasminogen	M74220|PLG|5340|plasminogen	BC060513|PLG|5340|plasminogen
hg19_v1_chr12_-_95945226_95945262	0.0498901	LHX3,4.p2	AL136825|USP44|84101|ubiquitin specific peptidase 44	NM_032147|USP44|84101|ubiquitin specific peptidase 44
hg19_v1_chr15_-_55652777_55652835	0.0496114	LHX3,4.p2	AF011794|CCPG1|9236|cell cycle progression 1
hg19_v1_chr18_+_33234532_33234626	0.0490962	LHX3,4.p2	NM_020474|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)	BC047746|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)	U41514|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)	X85018|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
hg19_v1_chr8_-_122653493_122653760	0.0487534	LHX3,4.p2	BC109071|HAS2|3037|hyaluronan synthase 2	BC109072|HAS2|3037|hyaluronan synthase 2	NM_005328|HAS2|3037|hyaluronan synthase 2	U54804|HAS2|3037|hyaluronan synthase 2	AK297724|HAS2|3037|hyaluronan synthase 2
hg19_v1_chr21_-_35899046_35899260	0.0486708	LHX3,4.p2	CR542065|RCAN1|1827|regulator of calcineurin 1	AK299444|RCAN1|1827|regulator of calcineurin 1	AK293293|RCAN1|1827|regulator of calcineurin 1	U85267|RCAN1|1827|regulator of calcineurin 1	NM_203418|RCAN1|1827|regulator of calcineurin 1
hg19_v1_chr3_-_178969402_178969417	0.0486248	LHX3,4.p2	AF160968|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3	NM_014407|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3	BC113851|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3
hg19_v1_chr1_-_35450902_35450919	0.0480129	LHX3,4.p2	BC029439|ZMYM6NB|100506144|ZMYM6 neighbor
hg19_v1_chr11_+_22689653_22689653	0.0478801	LHX3,4.p2	BC013326|GAS2|2620|growth arrest-specific 2	BC040470|GAS2|2620|growth arrest-specific 2	NM_177553|GAS2|2620|growth arrest-specific 2
hg19_v1_chr11_+_59856136_59856238	0.0475112	LHX3,4.p2	AK304487|MS4A2|2206|membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)	AK310142|MS4A2|2206|membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)	NM_000139|MS4A2|2206|membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)	D10583|MS4A2|2206|membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)	BC074800|MS4A2|2206|membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)	BC074843|MS4A2|2206|membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)	JF411082|MS4A2|2206|membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)
hg19_v1_chr3_-_93692898_93692938	0.0471216	LHX3,4.p2	BC015801|PROS1|5627|protein S (alpha)	NM_000313|PROS1|5627|protein S (alpha)
hg19_v1_chr1_+_206317458_206317605	0.045994	LHX3,4.p2	NM_001910|CTSE|1510|cathepsin E	NM_148964|CTSE|1510|cathepsin E	AJ250716|CTSE|1510|cathepsin E	AJ250717|CTSE|1510|cathepsin E	BC042537|CTSE|1510|cathepsin E	J05036|CTSE|1510|cathepsin E	AK292057|CTSE|1510|cathepsin E	AK298069|CTSE|1510|cathepsin E
hg19_v1_chr1_+_203595929_203595989	0.0457988	LHX3,4.p2	CR936708|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4	CR749393|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4
hg19_v1_chr8_-_102803178_102803188	0.0457542	LHX3,4.p2	AB209015|NCALD|83988|neurocalcin delta	AL136612|NCALD|83988|neurocalcin delta
hg19_v1_chr6_+_151561571_151561591	0.0452428	LHX3,4.p2	
hg19_v1_chr16_+_24788568_24788680	0.0451106	LHX3,4.p2	AY035864|TNRC6A|27327|trinucleotide repeat containing 6A
hg19_v1_chr1_-_35450923_35450927	0.0450822	LHX3,4.p2	AK129824|ZMYM6NB|100506144|ZMYM6 neighbor
hg19_v1_chr5_-_58571916_58571944	0.0449059	LHX3,4.p2	AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific
hg19_v1_chr4_+_71587674_71587767	0.0444573	LHX3,4.p2	NM_001037442|RUFY3|22902|RUN and FYVE domain containing 3	NM_014961|RUFY3|22902|RUN and FYVE domain containing 3	BC051716|RUFY3|22902|RUN and FYVE domain containing 3	BC053837|RUFY3|22902|RUN and FYVE domain containing 3	BC098433|RUFY3|22902|RUN and FYVE domain containing 3	AB020678|RUFY3|22902|RUN and FYVE domain containing 3	BC071988|RUFY3|22902|RUN and FYVE domain containing 3
hg19_v1_chr10_+_24755440_24755448	0.0443539	LHX3,4.p2	AK300422|KIAA1217|56243|KIAA1217
hg19_v1_chr5_+_147582338_147582403	0.0440298	LHX3,4.p2	GQ504704|SPINK6|404203|serine peptidase inhibitor, Kazal type 6	NM_001195290|SPINK6|404203|serine peptidase inhibitor, Kazal type 6	NM_205841|SPINK6|404203|serine peptidase inhibitor, Kazal type 6	GQ504705|SPINK6|404203|serine peptidase inhibitor, Kazal type 6	BC032003|SPINK6|404203|serine peptidase inhibitor, Kazal type 6
hg19_v1_chr5_-_156486128_156486131	0.0439584	LHX3,4.p2	AK298259|HAVCR1|26762|hepatitis A virus cellular receptor 1
hg19_v1_chr14_-_78083109_78083144	0.0434887	LHX3,4.p2	AB011098|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2	NM_004863|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2
hg19_v1_chr11_-_118084073_118084073	0.0432087	LHX3,4.p2	AK094399|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1	NM_153206|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1
hg19_v1_chrX_-_71458760_71458908	0.0426831	LHX3,4.p2	EU069463|ERCC6L|54821|excision repair cross-complementing rodent repair deficiency, complementation group 6-like	BC111486|ERCC6L|54821|excision repair cross-complementing rodent repair deficiency, complementation group 6-like	NM_017669|ERCC6L|54821|excision repair cross-complementing rodent repair deficiency, complementation group 6-like	AK056494|ERCC6L|54821|excision repair cross-complementing rodent repair deficiency, complementation group 6-like
hg19_v1_chr3_-_124930192_124930242	0.0426703	LHX3,4.p2	AF345197|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8	HQ258349|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8	BC126158|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8	BC126160|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8	AF390442|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8	NM_001195483|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8
hg19_v1_chr8_-_17580024_17580083	0.0422736	LHX3,4.p2	AK294860|MTUS1|57509|microtubule associated tumor suppressor 1	NM_001166393|MTUS1|57509|microtubule associated tumor suppressor 1
hg19_v1_chr3_+_148447966_148447966	0.0422025	LHX3,4.p2	NM_032049|AGTR1|185|angiotensin II receptor, type 1
hg19_v1_chr19_+_52800424_52800450	0.0420514	LHX3,4.p2	BC007056|ZNF480|147657|zinc finger protein 480	BC054018|ZNF480|147657|zinc finger protein 480	NM_144684|ZNF480|147657|zinc finger protein 480	AK096559|ZNF480|147657|zinc finger protein 480	AK096442|ZNF480|147657|zinc finger protein 480	AK303271|ZNF480|147657|zinc finger protein 480	AL832560|ZNF480|147657|zinc finger protein 480	BC065503|ZNF480|147657|zinc finger protein 480	AY512662|ZNF480|147657|zinc finger protein 480	BC018783|ZNF480|147657|zinc finger protein 480
hg19_v1_chr17_-_38821286_38821415	0.0419175	LHX3,4.p2	BX538083|KRT222|125113|keratin 222	EU832123|KRT222|125113|keratin 222	EU832217|KRT222|125113|keratin 222	BC032815|KRT222|125113|keratin 222	AK308598|KRT222|125113|keratin 222	NM_152349|KRT222|125113|keratin 222
hg19_v1_chr16_+_2809933_2810070	0.0417858	LHX3,4.p2	
hg19_v1_chr19_+_663381_663481	0.0416632	LHX3,4.p2	
hg19_v1_chr21_-_43771069_43771207	0.0416242	LHX3,4.p2	X51698|TFF2|7032|trefoil factor 2	BC032820|TFF2|7032|trefoil factor 2	NM_005423|TFF2|7032|trefoil factor 2
hg19_v1_chr7_+_26400503_26400554	0.0414229	LHX3,4.p2	NM_001199837|SNX10|29887|sorting nexin 10	AK307905|SNX10|29887|sorting nexin 10
hg19_v1_chr10_+_17270469_17270604	0.0412135	LHX3,4.p2	BC066956|VIM|7431|vimentin
hg19_v1_chr8_-_77913279_77913279	0.0411293	LHX3,4.p2	NM_001172086|PEX2|5828|peroxisomal biogenesis factor 2	NM_001172087|PEX2|5828|peroxisomal biogenesis factor 2
hg19_v1_chr14_+_96846021_96846021	0.0408396	LHX3,4.p2	BC004818|C14orf129|51527|chromosome 14 open reading frame 129	NM_016472|C14orf129|51527|chromosome 14 open reading frame 129
hg19_v1_chr15_-_75194542_75194610	0.0405048	LHX3,4.p2	AK025373|C15orf17|57184|chromosome 15 open reading frame 17
hg19_v1_chr12_-_89920038_89920038	0.0404688	LHX3,4.p2	AK297677|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough	NM_001199781|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough	NM_001199782|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough	NM_172240|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)
hg19_v1_chr12_+_54422193_54422305	0.0403899	LHX3,4.p2	NM_004503|HOXC6|3223|homeobox C6	S82986|HOXC6|3223|homeobox C6	BC074844|HOXC6|3223|homeobox C6	BC074845|HOXC6|3223|homeobox C6	CR456954|HOXC6|3223|homeobox C6
hg19_v1_chr1_+_203596222_203596243	0.0403476	LHX3,4.p2	BC140774|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4
hg19_v1_chr9_-_14086901_14087003	0.0401352	LHX3,4.p2	BX537698|NFIB|4781|nuclear factor I/B
hg19_v1_chr1_+_213123853_213123982	0.0395714	LHX3,4.p2	AK290973|VASH2|79805|vasohibin 2	NM_001136474|VASH2|79805|vasohibin 2	NM_001136475|VASH2|79805|vasohibin 2	NM_024749|VASH2|79805|vasohibin 2	AK022567|VASH2|79805|vasohibin 2	AK096605|VASH2|79805|vasohibin 2	BC053836|VASH2|79805|vasohibin 2	BC051856|VASH2|79805|vasohibin 2	BC028194|VASH2|79805|vasohibin 2
hg19_v1_chr6_-_116692855_116692883	0.0394862	LHX3,4.p2	AK298559|LOC100287467|100287467|uncharacterized LOC100287467	AK316303|LOC100287467|100287467|uncharacterized LOC100287467
hg19_v1_chrX_+_107288199_107288320	0.0394257	LHX3,4.p2	BX648658|VSIG1|340547|V-set and immunoglobulin domain containing 1	NM_001170553|VSIG1|340547|V-set and immunoglobulin domain containing 1	NM_182607|VSIG1|340547|V-set and immunoglobulin domain containing 1	AK301783|VSIG1|340547|V-set and immunoglobulin domain containing 1	BC043216|VSIG1|340547|V-set and immunoglobulin domain containing 1	BX640913|VSIG1|340547|V-set and immunoglobulin domain containing 1	AK315846|VSIG1|340547|V-set and immunoglobulin domain containing 1	AK301311|VSIG1|340547|V-set and immunoglobulin domain containing 1	AK292472|VSIG1|340547|V-set and immunoglobulin domain containing 1
hg19_v1_chr2_+_234627423_234627474	0.0393808	LHX3,4.p2	AK313623|UGT1A4|54657|UDP glucuronosyltransferase 1 family, polypeptide A4	M57951|UGT1A4|54657|UDP glucuronosyltransferase 1 family, polypeptide A4	NM_007120|UGT1A4|54657|UDP glucuronosyltransferase 1 family, polypeptide A4	BC139784|UGT1A4|54657|UDP glucuronosyltransferase 1 family, polypeptide A4	AY435139|UGT1A4|54657|UDP glucuronosyltransferase 1 family, polypeptide A4	BC121036|UGT1A4|54657|UDP glucuronosyltransferase 1 family, polypeptide A4	BC131623|UGT1A4|54657|UDP glucuronosyltransferase 1 family, polypeptide A4
hg19_v1_chr15_-_31947541_31947541	0.0392882	LHX3,4.p2	AJ430383|OTUD7A|161725|OTU domain containing 7A	NM_130901|OTUD7A|161725|OTU domain containing 7A
hg19_v1_chr6_-_132910824_132910876	0.0389938	LHX3,4.p2	AF021818|TAAR5|9038|trace amine associated receptor 5	BC069171|TAAR5|9038|trace amine associated receptor 5	BC095541|TAAR5|9038|trace amine associated receptor 5	BC112209|TAAR5|9038|trace amine associated receptor 5	BC112211|TAAR5|9038|trace amine associated receptor 5	NM_003967|TAAR5|9038|trace amine associated receptor 5
hg19_v1_chr1_-_110950489_110950563	0.0388236	LHX3,4.p2	HQ257924|HBXIP|10542|hepatitis B virus x interacting protein	NM_006402|HBXIP|10542|hepatitis B virus x interacting protein	BC062619|HBXIP|10542|hepatitis B virus x interacting protein
hg19_v1_chr17_+_3377346_3377403	0.0387884	LHX3,4.p2	AK312901|ASPA|443|aspartoacylase	NM_001128085|ASPA|443|aspartoacylase
hg19_v1_chr19_+_46498338_46498338	0.0387199	LHX3,4.p2	NM_001080402|CCDC61|729440|coiled-coil domain containing 61
hg19_v1_chr3_-_149095333_149095399	0.0386766	LHX3,4.p2	CR456953|TM4SF1|4071|transmembrane 4 L six family member 1	BC010166|TM4SF1|4071|transmembrane 4 L six family member 1
hg19_v1_chr5_+_40841296_40841589	0.0385922	LHX3,4.p2	AF356193|CARD6|84674|caspase recruitment domain family, member 6	AY196783|CARD6|84674|caspase recruitment domain family, member 6	NM_032587|CARD6|84674|caspase recruitment domain family, member 6	BC093825|CARD6|84674|caspase recruitment domain family, member 6	AK304349|CARD6|84674|caspase recruitment domain family, member 6	AB209844|CARD6|84674|caspase recruitment domain family, member 6
hg19_v1_chr12_-_21487831_21487833	0.0380162	LHX3,4.p2	NM_021094|SLCO1A2|6579|solute carrier organic anion transporter family, member 1A2	AK296044|SLCO1A2|6579|solute carrier organic anion transporter family, member 1A2
hg19_v1_chr13_-_49975734_49975734	0.0376281	LHX3,4.p2	NM_030925|CAB39L|81617|calcium binding protein 39-like
hg19_v1_chr8_-_17555158_17555245	0.0374126	LHX3,4.p2	AF293357|MTUS1|57509|microtubule associated tumor suppressor 1	BC017740|MTUS1|57509|microtubule associated tumor suppressor 1	AK314692|MTUS1|57509|microtubule associated tumor suppressor 1	BC098381|MTUS1|57509|microtubule associated tumor suppressor 1	BC142971|MTUS1|57509|microtubule associated tumor suppressor 1	FJ472827|MTUS1|57509|microtubule associated tumor suppressor 1	AK289750|MTUS1|57509|microtubule associated tumor suppressor 1	NM_020749|MTUS1|57509|microtubule associated tumor suppressor 1
hg19_v1_chr10_+_123748688_123748777	0.0372703	LHX3,4.p2	BC010219|TACC2|10579|transforming, acidic coiled-coil containing protein 2	NM_206861|TACC2|10579|transforming, acidic coiled-coil containing protein 2	NM_206862|TACC2|10579|transforming, acidic coiled-coil containing protein 2	AF528098|TACC2|10579|transforming, acidic coiled-coil containing protein 2	AF528099|TACC2|10579|transforming, acidic coiled-coil containing protein 2	BC144599|TACC2|10579|transforming, acidic coiled-coil containing protein 2	BC144600|TACC2|10579|transforming, acidic coiled-coil containing protein 2	BC150627|TACC2|10579|transforming, acidic coiled-coil containing protein 2	BC031036|TACC2|10579|transforming, acidic coiled-coil containing protein 2
hg19_v1_chr7_-_135613197_135613244	0.0371958	LHX3,4.p2	AF130088|LUZP6|767558|leucine zipper protein 6
hg19_v1_chr1_-_168513201_168513234	0.0371543	LHX3,4.p2	BC069360|XCL2|6846|chemokine (C motif) ligand 2	U23772|XCL1|6375|chemokine (C motif) ligand 1	BC070308|XCL2|6846|chemokine (C motif) ligand 2	NM_003175|XCL2|6846|chemokine (C motif) ligand 2
hg19_v1_chr2_+_132480063_132480063	0.0371428	LHX3,4.p2	AF038169|C2orf27A|29798|chromosome 2 open reading frame 27A	NM_013310|C2orf27A|29798|chromosome 2 open reading frame 27A
hg19_v1_chr12_-_23737507_23737545	0.0370132	LHX3,4.p2	NM_178010|SOX5|6660|SRY (sex determining region Y)-box 5	AK098610|SOX5|6660|SRY (sex determining region Y)-box 5	AK223536|SOX5|6660|SRY (sex determining region Y)-box 5
hg19_v1_chr1_-_39347258_39347297	0.0370125	LHX3,4.p2	AK312811|GJA9|81025|gap junction protein, alpha 9, 59kDa	BC051675|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough	AK123051|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough	NM_030772|GJA9|81025|gap junction protein, alpha 9, 59kDa
hg19_v1_chr12_+_75784849_75784870	0.036766	LHX3,4.p2	BC016749|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2	AK093175|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2
hg19_v1_chr10_+_24755459_24755479	0.0366014	LHX3,4.p2	BX640796|KIAA1217|56243|KIAA1217	BX648451|KIAA1217|56243|KIAA1217	BC098577|KIAA1217|56243|KIAA1217
hg19_v1_chr16_-_30934437_30934589	0.0365659	LHX3,4.p2	BC101464|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)	BC101988|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)	BC105687|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)	BC105926|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)	AK092263|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)
hg19_v1_chr5_+_140771482_140771482	0.0361725	LHX3,4.p2	NM_014004|PCDHGA8|9708|protocadherin gamma subfamily A, 8	NM_032088|PCDHGA8|9708|protocadherin gamma subfamily A, 8
hg19_v1_chr8_-_80993009_80993050	0.0355459	LHX3,4.p2	AF202897|TPD52|7163|tumor protein D52	EF152584|TPD52|7163|tumor protein D52	NM_001025252|TPD52|7163|tumor protein D52	GQ499324|TPD52|7163|tumor protein D52	GQ499325|TPD52|7163|tumor protein D52	GQ499326|TPD52|7163|tumor protein D52	GQ499327|TPD52|7163|tumor protein D52	GQ499328|TPD52|7163|tumor protein D52
hg19_v1_chr14_+_78870092_78870092	0.0354099	LHX3,4.p2	AB018286|NRXN3|9369|neurexin 3	BC152457|NRXN3|9369|neurexin 3	NM_004796|NRXN3|9369|neurexin 3
hg19_v1_chr12_+_28410132_28410148	0.0347698	LHX3,4.p2	AY289196|CCDC91|55297|coiled-coil domain containing 91	NM_018318|CCDC91|55297|coiled-coil domain containing 91
hg19_v1_chr7_+_96745904_96745904	0.0345915	LHX3,4.p2	BC028409|ACN9|57001|ACN9 homolog (S. cerevisiae)	NM_020186|ACN9|57001|ACN9 homolog (S. cerevisiae)
hg19_v1_chr1_+_44457424_44457628	0.0342492	LHX3,4.p2	AY487420|CCDC24|149473|coiled-coil domain containing 24
hg19_v1_chr2_+_182850550_182850748	0.0338715	LHX3,4.p2	NM_001080545|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK129898|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AF494535|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BX647581|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC017943|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C
hg19_v1_chr2_-_134326030_134326047	0.0338157	LHX3,4.p2	AK057980|NCKAP5|344148|NCK-associated protein 5	NM_207363|NCKAP5|344148|NCK-associated protein 5	NM_207481|NCKAP5|344148|NCK-associated protein 5
hg19_v1_chr19_+_41430123_41430177	0.0337714	LHX3,4.p2	AK307933|CYP2B7P1|1556|cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1	AK310944|CYP2B7P1|1556|cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1	BC041174|CYP2B7P1|1556|cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1	M29873|CYP2B7P1|1556|cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1	DQ198366|CYP2B7P1|1556|cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1	DQ198367|CYP2B7P1|1556|cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1
hg19_v1_chrX_-_77225134_77225138	0.0334506	LHX3,4.p2	NM_001029891|PGAM4|441531|phosphoglycerate mutase family member 4
hg19_v1_chr5_-_59783885_59783924	0.0330985	LHX3,4.p2	AY245866|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	AK307363|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	NM_001165899|PDE4D|5144|phosphodiesterase 4D, cAMP-specific
hg19_v1_chr14_+_58894395_58894447	0.0328864	LHX3,4.p2	
hg19_v1_chr20_-_52199635_52199635	0.0326061	LHX3,4.p2	AF041259|ZNF217|7764|zinc finger protein 217	NM_006526|ZNF217|7764|zinc finger protein 217
hg19_v1_chr1_+_207262583_207262659	0.0325383	LHX3,4.p2	BC005378|C4BPB|725|complement component 4 binding protein, beta	NM_000716|C4BPB|725|complement component 4 binding protein, beta	NM_001017364|C4BPB|725|complement component 4 binding protein, beta	L11245|C4BPB|725|complement component 4 binding protein, beta	NM_001017367|C4BPB|725|complement component 4 binding protein, beta	AK315137|C4BPB|725|complement component 4 binding protein, beta
hg19_v1_chr13_-_49018802_49018839	0.0322997	LHX3,4.p2	BC039373|LPAR6|10161|lysophosphatidic acid receptor 6	BC045651|LPAR6|10161|lysophosphatidic acid receptor 6	NM_005767|LPAR6|10161|lysophosphatidic acid receptor 6
hg19_v1_chr1_+_14031349_14031349	0.0322156	LHX3,4.p2	NM_012231|PRDM2|7799|PR domain containing 2, with ZNF domain	NM_015866|PRDM2|7799|PR domain containing 2, with ZNF domain	U17838|PRDM2|7799|PR domain containing 2, with ZNF domain
hg19_v1_chr4_+_113218498_113218557	0.0321357	LHX3,4.p2	NM_001102406|ALPK1|80216|alpha-kinase 1	NM_025144|ALPK1|80216|alpha-kinase 1	AK026323|ALPK1|80216|alpha-kinase 1	AK304708|ALPK1|80216|alpha-kinase 1	AK097246|ALPK1|80216|alpha-kinase 1	BC028117|ALPK1|80216|alpha-kinase 1	AK303489|ALPK1|80216|alpha-kinase 1	BX648798|ALPK1|80216|alpha-kinase 1	BC060780|ALPK1|80216|alpha-kinase 1
hg19_v1_chr10_+_48255223_48255428	0.0321091	LHX3,4.p2	AK298761|ANXA8|653145|annexin A8	NM_001040084|ANXA8|653145|annexin A8	BC073755|ANXA8|653145|annexin A8	Z36830|ANXA8|653145|annexin A8	BC004376|ANXA8|653145|annexin A8	NM_001098845|ANXA8L1|728113|annexin A8-like 1	X16662|ANXA8L2|244|annexin A8-like 2	AK300158|ANXA8|653145|annexin A8	AK223149|ANXA8L2|244|annexin A8-like 2	AK296573|ANXA8|653145|annexin A8	AK300139|ANXA8|653145|annexin A8	M81844|ANXA8|653145|annexin A8	DQ893430|ANXA8L2|244|annexin A8-like 2	DQ896775|ANXA8|653145|annexin A8
hg19_v1_chr19_+_39155209_39155341	0.0320352	LHX3,4.p2	
hg19_v1_chr9_+_75766794_75766812	0.0319156	LHX3,4.p2	BC001275|ANXA1|301|annexin A1
hg19_v1_chr9_+_75766777_75766780	0.0318298	LHX3,4.p2	AK296808|ANXA1|301|annexin A1	BC035993|ANXA1|301|annexin A1	NM_000700|ANXA1|301|annexin A1	X05908|ANXA1|301|annexin A1
hg19_v1_chr4_+_169552752_169552840	0.0317355	LHX3,4.p2	NM_001166109|PALLD|23022|palladin, cytoskeletal associated protein	AK095512|PALLD|23022|palladin, cytoskeletal associated protein
hg19_v1_chr6_-_26235160_26235241	0.0315259	LHX3,4.p2	EU446961|HIST1H1D|3007|histone cluster 1, H1d	AK312845|HIST1H1D|3007|histone cluster 1, H1d	NM_005320|HIST1H1D|3007|histone cluster 1, H1d	BC104874|HIST1H1D|3007|histone cluster 1, H1d	BC111971|HIST1H1D|3007|histone cluster 1, H1d
hg19_v1_chr15_+_96869156_96869166	0.0313069	LHX3,4.p2	BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2
hg19_v1_chr7_-_92777657_92777684	0.0313018	LHX3,4.p2	AF474973|SAMD9L|219285|sterile alpha motif domain containing 9-like	AY195582|SAMD9L|219285|sterile alpha motif domain containing 9-like	AY195583|SAMD9L|219285|sterile alpha motif domain containing 9-like	AY195584|SAMD9L|219285|sterile alpha motif domain containing 9-like	AY195585|SAMD9L|219285|sterile alpha motif domain containing 9-like	AY195586|SAMD9L|219285|sterile alpha motif domain containing 9-like	AY195587|SAMD9L|219285|sterile alpha motif domain containing 9-like	DQ068177|SAMD9L|219285|sterile alpha motif domain containing 9-like	AB095926|SAMD9L|219285|sterile alpha motif domain containing 9-like	NM_152703|SAMD9L|219285|sterile alpha motif domain containing 9-like
hg19_v1_chr19_+_30433111_30433453	0.0312704	LHX3,4.p2	NM_003796|URI1|8725|URI1, prefoldin-like chaperone	AK226173|URI1|8725|URI1, prefoldin-like chaperone	AF091095|URI1|8725|URI1, prefoldin-like chaperone	AK292170|URI1|8725|URI1, prefoldin-like chaperone	BC067259|URI1|8725|URI1, prefoldin-like chaperone	AK314313|URI1|8725|URI1, prefoldin-like chaperone	AK001437|URI1|8725|URI1, prefoldin-like chaperone	NM_134447|URI1|8725|URI1, prefoldin-like chaperone
hg19_v1_chr7_+_107110501_107110504	0.0311683	LHX3,4.p2	NM_005295|GPR22|2845|G protein-coupled receptor 22	AK122621|GPR22|2845|G protein-coupled receptor 22	AK307393|GPR22|2845|G protein-coupled receptor 22
hg19_v1_chr6_+_105404922_105404922	0.0304849	LHX3,4.p2	AK131411|LIN28B|389421|lin-28 homolog B (C. elegans)	DQ127228|LIN28B|389421|lin-28 homolog B (C. elegans)	NM_001004317|LIN28B|389421|lin-28 homolog B (C. elegans)
hg19_v1_chr6_-_66417069_66417117	0.0304532	LHX3,4.p2	FM209056|EYS|346007|eyes shut homolog (Drosophila)	AB593112|EYS|346007|eyes shut homolog (Drosophila)	AB593114|EYS|346007|eyes shut homolog (Drosophila)	BX647741|EYS|346007|eyes shut homolog (Drosophila)	BX537914|EYS|346007|eyes shut homolog (Drosophila)	FJ416331|EYS|346007|eyes shut homolog (Drosophila)	NM_001142800|EYS|346007|eyes shut homolog (Drosophila)	NM_001142801|EYS|346007|eyes shut homolog (Drosophila)
hg19_v1_chr2_-_44586854_44586887	0.0303879	LHX3,4.p2	BC143061|PREPL|9581|prolyl endopeptidase-like	BC143062|PREPL|9581|prolyl endopeptidase-like	DQ023506|PREPL|9581|prolyl endopeptidase-like	DQ023507|PREPL|9581|prolyl endopeptidase-like	NM_001042385|PREPL|9581|prolyl endopeptidase-like	NM_001042386|PREPL|9581|prolyl endopeptidase-like
hg19_v1_chr8_+_87111132_87111157	0.0303106	LHX3,4.p2	BC065207|ATP6V0D2|245972|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2	AK096027|ATP6V0D2|245972|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2	NM_152565|ATP6V0D2|245972|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2	AY079172|ATP6V0D2|245972|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2
hg19_v1_chr15_-_75918445_75918445	0.0301928	LHX3,4.p2	NM_001042581|SNUPN|10073|snurportin 1	NM_005701|SNUPN|10073|snurportin 1
hg19_v1_chr15_-_73051650_73051778	0.0300862	LHX3,4.p2	
hg19_v1_chr22_-_36236421_36236629	0.0300264	LHX3,4.p2	AF229058|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	AL009266|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	AK314632|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	BC013115|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	BC025281|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	AK291460|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001031695|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001082576|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001082577|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_014309|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v1_chr20_-_45927496_45927643	0.029994	LHX3,4.p2	BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8
hg19_v1_chr3_+_180320955_180320972	0.0294117	LHX3,4.p2	AB075860|TTC14|151613|tetratricopeptide repeat domain 14
hg19_v1_chr2_-_200325200_200325283	0.0292637	LHX3,4.p2	AB028957|SATB2|23314|SATB homeobox 2
hg19_v1_chr18_+_21269528_21269647	0.0291953	LHX3,4.p2	BC093406|LAMA3|3909|laminin, alpha 3	NM_001127717|LAMA3|3909|laminin, alpha 3	NM_198129|LAMA3|3909|laminin, alpha 3	AY327115|LAMA3|3909|laminin, alpha 3	AY327116|LAMA3|3909|laminin, alpha 3
hg19_v1_chr6_-_75965845_75965927	0.029168	LHX3,4.p2	AJ420517|TMEM30A|55754|transmembrane protein 30A
hg19_v1_chrX_+_24073071_24073085	0.0289446	LHX3,4.p2	AK222577|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	AK290397|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	AK312247|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	DQ891794|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	DQ894977|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	AB451230|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	AB451353|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	L19161|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa
hg19_v1_chr5_+_140235594_140235633	0.0288663	LHX3,4.p2	BC130447|PCDHA10|56139|protocadherin alpha 10	AF152306|PCDHA10|56139|protocadherin alpha 10	AF152475|PCDHA10|56139|protocadherin alpha 10	AF169689|PCDHA10|56139|protocadherin alpha 10	HQ258585|PCDHA10|56139|protocadherin alpha 10	NM_018901|PCDHA10|56139|protocadherin alpha 10	NM_031859|PCDHA10|56139|protocadherin alpha 10	NM_031860|PCDHA10|56139|protocadherin alpha 10
hg19_v1_chr3_+_50273674_50273697	0.0288444	LHX3,4.p2	J03004|GNAI2|2771|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
hg19_v1_chr17_-_7218370_7218664	0.0288181	LHX3,4.p2	BT006998|GPS2|2874|G protein pathway suppressor 2	CR541723|GPS2|2874|G protein pathway suppressor 2	CR541750|GPS2|2874|G protein pathway suppressor 2	BC014192|GPS2|2874|G protein pathway suppressor 2	BC013652|GPS2|2874|G protein pathway suppressor 2	NM_004489|GPS2|2874|G protein pathway suppressor 2
hg19_v1_chr10_+_35426709_35426763	0.0287128	LHX3,4.p2	NM_183011|CREM|1390|cAMP responsive element modulator	NM_183012|CREM|1390|cAMP responsive element modulator
hg19_v1_chr20_+_30697291_30697447	0.0283394	LHX3,4.p2	NM_014742|TM9SF4|9777|transmembrane 9 superfamily protein member 4
hg19_v1_chr12_-_24102563_24102641	0.0283199	LHX3,4.p2	AK074317|SOX5|6660|SRY (sex determining region Y)-box 5	BC065532|SOX5|6660|SRY (sex determining region Y)-box 5	AB081589|SOX5|6660|SRY (sex determining region Y)-box 5	NM_006940|SOX5|6660|SRY (sex determining region Y)-box 5
hg19_v1_chr3_-_27764197_27764205	0.0283086	LHX3,4.p2	AK299499|EOMES|8320|eomesodermin	AK299695|EOMES|8320|eomesodermin	AK297389|EOMES|8320|eomesodermin	AK297461|EOMES|8320|eomesodermin	AK316166|EOMES|8320|eomesodermin
hg19_v1_chr12_-_91505215_91505293	0.027908	LHX3,4.p2	BC035997|LUM|4060|lumican	AK223177|LUM|4060|lumican	U18728|LUM|4060|lumican	U21128|LUM|4060|lumican	AK312682|LUM|4060|lumican	BC007038|LUM|4060|lumican
hg19_v1_chr1_-_103496768_103496799	0.0278641	LHX3,4.p2	AB208844|COL11A1|1301|collagen, type XI, alpha 1
hg19_v1_chrX_+_150565674_150565686	0.0277251	LHX3,4.p2	AK096835|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
hg19_v1_chr4_-_39523132_39523141	0.0274573	LHX3,4.p2	DQ891116|UGDH|7358|UDP-glucose 6-dehydrogenase	DQ894295|UGDH|7358|UDP-glucose 6-dehydrogenase
hg19_v1_chr5_+_76435073_76435100	0.0272809	LHX3,4.p2	
hg19_v1_chr1_-_173886464_173886515	0.0272184	LHX3,4.p2	AK312654|SERPINC1|462|serpin peptidase inhibitor, clade C (antithrombin), member 1	BC022309|SERPINC1|462|serpin peptidase inhibitor, clade C (antithrombin), member 1	NM_000488|SERPINC1|462|serpin peptidase inhibitor, clade C (antithrombin), member 1
hg19_v1_chr9_-_85882093_85882201	0.0268156	LHX3,4.p2	GQ129452|FRMD3|257019|FERM domain containing 3	BC023560|FRMD3|257019|FERM domain containing 3	NM_001244962|FRMD3|257019|FERM domain containing 3
hg19_v1_chr10_-_21786186_21786196	0.0264134	LHX3,4.p2	BC040880|C10orf114|399726|chromosome 10 open reading frame 114
hg19_v1_chr12_+_56414688_56414831	0.0263566	LHX3,4.p2	NM_022465|IKZF4|64375|IKAROS family zinc finger 4 (Eos)	AK122880|IKZF4|64375|IKAROS family zinc finger 4 (Eos)
hg19_v1_chr3_+_45927995_45928116	0.0263467	LHX3,4.p2	NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9	NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9	AF145439|CCR9|10803|chemokine (C-C motif) receptor 9	BC069678|CCR9|10803|chemokine (C-C motif) receptor 9	AK312824|CCR9|10803|chemokine (C-C motif) receptor 9	AK313366|CCR9|10803|chemokine (C-C motif) receptor 9	AF145440|CCR9|10803|chemokine (C-C motif) receptor 9	AF145207|CCR9|10803|chemokine (C-C motif) receptor 9	AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9
hg19_v1_chr3_+_2933898_2933920	0.0259752	LHX3,4.p2	NM_001206956|CNTN4|152330|contactin 4	NM_175613|CNTN4|152330|contactin 4	AK057278|CNTN4|152330|contactin 4	AK314396|CNTN4|152330|contactin 4	BC026119|CNTN4|152330|contactin 4
hg19_v1_chrX_-_21676416_21676447	0.0259693	LHX3,4.p2	BC109031|KLHL34|257240|kelch-like 34 (Drosophila)	AK092279|KLHL34|257240|kelch-like 34 (Drosophila)	NM_153270|KLHL34|257240|kelch-like 34 (Drosophila)
hg19_v1_chr4_-_103245468_103245468	0.0257629	LHX3,4.p2	AK027652|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8	NM_001135148|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8
hg19_v1_chr20_+_42187634_42187666	0.0256678	LHX3,4.p2	NM_170693|SGK2|10110|serum/glucocorticoid regulated kinase 2	AK308502|SGK2|10110|serum/glucocorticoid regulated kinase 2
hg19_v1_chr10_+_115312777_115312880	0.025419	LHX3,4.p2	NM_004132|HABP2|3026|hyaluronan binding protein 2	D49742|HABP2|3026|hyaluronan binding protein 2	S83182|HABP2|3026|hyaluronan binding protein 2	BC031412|HABP2|3026|hyaluronan binding protein 2	AK290832|HABP2|3026|hyaluronan binding protein 2	AK303761|HABP2|3026|hyaluronan binding protein 2	AK303759|HABP2|3026|hyaluronan binding protein 2	DQ890820|HABP2|3026|hyaluronan binding protein 2	DQ893975|HABP2|3026|hyaluronan binding protein 2
hg19_v1_chr12_-_54653369_54653373	0.025419	LHX3,4.p2	NM_001127321|CBX5|23468|chromobox homolog 5
hg19_v1_chr16_+_15489586_15489617	0.0250092	LHX3,4.p2	DQ004255|MPV17L|255027|MPV17 mitochondrial membrane protein-like	DQ004256|MPV17L|255027|MPV17 mitochondrial membrane protein-like	NM_001128423|MPV17L|255027|MPV17 mitochondrial membrane protein-like	NM_173803|MPV17L|255027|MPV17 mitochondrial membrane protein-like
hg19_v1_chr10_-_69752385_69752431	0.0249212	LHX3,4.p2	AK027835|HERC4|26091|hect domain and RLD 4
hg19_v1_chrX_+_115301957_115302033	0.0246447	LHX3,4.p2	AK313927|AGTR2|186|angiotensin II receptor, type 2	NM_000686|AGTR2|186|angiotensin II receptor, type 2	X87723|AGTR2|186|angiotensin II receptor, type 2	U16957|AGTR2|186|angiotensin II receptor, type 2
hg19_v1_chr3_+_130569368_130569444	0.0245687	LHX3,4.p2	NM_001199180|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1	NM_001199181|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1	NM_001199182|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1	AK296470|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1
hg19_v1_chr11_-_26593667_26593814	0.0243525	LHX3,4.p2	AK128337|MUC15|143662|mucin 15, cell surface associated	AJ417818|MUC15|143662|mucin 15, cell surface associated	AJ507429|MUC15|143662|mucin 15, cell surface associated	BC058007|MUC15|143662|mucin 15, cell surface associated	AY358668|MUC15|143662|mucin 15, cell surface associated	BC020912|MUC15|143662|mucin 15, cell surface associated	NM_001135091|MUC15|143662|mucin 15, cell surface associated	NM_001135092|MUC15|143662|mucin 15, cell surface associated	NM_145650|MUC15|143662|mucin 15, cell surface associated
hg19_v1_chr1_-_200378832_200378986	0.0242556	LHX3,4.p2	AF125158|ZNF281|23528|zinc finger protein 281	BC051905|ZNF281|23528|zinc finger protein 281
hg19_v1_chr14_-_95599794_95599839	0.0242322	LHX3,4.p2	HM595745|DICER1|23405|dicer 1, ribonuclease type III	NM_001195573|DICER1|23405|dicer 1, ribonuclease type III
hg19_v1_chr4_+_41540187_41540224	0.0241533	LHX3,4.p2	BC023546|LIMCH1|22998|LIM and calponin homology domains 1
hg19_v1_chr2_-_86116016_86116156	0.024123	LHX3,4.p2	AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
hg19_v1_chr7_+_90339146_90339175	0.0241076	LHX3,4.p2	AK295086|CDK14|5218|cyclin-dependent kinase 14	AK296406|CDK14|5218|cyclin-dependent kinase 14	AK307484|CDK14|5218|cyclin-dependent kinase 14	AK316026|CDK14|5218|cyclin-dependent kinase 14
hg19_v1_chr5_+_67586466_67586627	0.024087	LHX3,4.p2	NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v1_chr6_+_34206567_34206567	0.0240137	LHX3,4.p2	BC015789|HMGA1|3159|high mobility group AT-hook 1	NM_145905|HMGA1|3159|high mobility group AT-hook 1
hg19_v1_chr8_+_22844918_22844929	0.0237318	LHX3,4.p2	BC034917|RHOBTB2|23221|Rho-related BTB domain containing 2	NM_001160036|RHOBTB2|23221|Rho-related BTB domain containing 2
hg19_v1_chr3_+_157827937_157827944	0.0234997	LHX3,4.p2	AK300388|RSRC1|51319|arginine/serine-rich coiled-coil 1
hg19_v1_chr10_+_91498724_91498811	0.0234994	LHX3,4.p2	AK025628|KIF20B|9585|kinesin family member 20B
hg19_v1_chr9_+_125133228_125133314	0.0230936	LHX3,4.p2	NM_000962|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)	NM_080591|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)	BC029840|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v1_chr2_-_152118258_152118409	0.022819	LHX3,4.p2	BC136410|RBM43|375287|RNA binding motif protein 43	BC136411|RBM43|375287|RNA binding motif protein 43	AK127552|RBM43|375287|RNA binding motif protein 43	NM_198557|RBM43|375287|RNA binding motif protein 43
hg19_v1_chr22_-_36236330_36236351	0.0227675	LHX3,4.p2	CR456559|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v1_chr9_-_112191105_112191322	0.0227404	LHX3,4.p2	AK296265|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	AK296388|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	AK316118|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	NM_001145371|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	NM_001145372|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3
hg19_v1_chr2_+_5832778_5832852	0.0226342	LHX3,4.p2	U23752|SOX11|6664|SRY (sex determining region Y)-box 11	AB028641|SOX11|6664|SRY (sex determining region Y)-box 11	NM_003108|SOX11|6664|SRY (sex determining region Y)-box 11	BC025789|SOX11|6664|SRY (sex determining region Y)-box 11
hg19_v1_chrX_+_43515406_43515423	0.0223943	LHX3,4.p2	NM_000240|MAOA|4128|monoamine oxidase A	AK223499|MAOA|4128|monoamine oxidase A
hg19_v1_chr10_+_104263726_104263913	0.0222657	LHX3,4.p2	AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)	BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)	AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)	AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)	AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)	AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)	AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)	DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)	DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)	AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)
hg19_v1_chr7_-_126883568_126883568	0.0220116	LHX3,4.p2	NM_000845|GRM8|2918|glutamate receptor, metabotropic 8
hg19_v1_chr12_-_42983412_42983573	0.0219935	LHX3,4.p2	BC114939|PRICKLE1|144165|prickle homolog 1 (Drosophila)	BC114940|PRICKLE1|144165|prickle homolog 1 (Drosophila)	AF399844|PRICKLE1|144165|prickle homolog 1 (Drosophila)	AF543759|PRICKLE1|144165|prickle homolog 1 (Drosophila)	AF543760|PRICKLE1|144165|prickle homolog 1 (Drosophila)	AK056499|PRICKLE1|144165|prickle homolog 1 (Drosophila)	NM_153026|PRICKLE1|144165|prickle homolog 1 (Drosophila)
hg19_v1_chrX_+_43515441_43515519	0.0218548	LHX3,4.p2	M68840|MAOA|4128|monoamine oxidase A
hg19_v1_chr8_-_17579729_17579729	0.0218354	LHX3,4.p2	AK125188|MTUS1|57509|microtubule associated tumor suppressor 1	FJ472826|MTUS1|57509|microtubule associated tumor suppressor 1	NM_001001931|MTUS1|57509|microtubule associated tumor suppressor 1
hg19_v1_chr2_-_220083658_220083691	0.021714	LHX3,4.p2	AK057026|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6	BC000559|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6	AJ289233|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6	AK303230|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6
hg19_v1_chr12_-_54653317_54653332	0.0216627	LHX3,4.p2	BC006821|CBX5|23468|chromobox homolog 5	NM_001127322|CBX5|23468|chromobox homolog 5
hg19_v1_chr2_+_135596185_135596252	0.0216051	LHX3,4.p2	AK125008|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase	NM_138326|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase	BC016018|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase	BC107420|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase	AB071418|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase
hg19_v1_chr7_+_138818489_138818567	0.0216018	LHX3,4.p2	NM_001144920|TTC26|79989|tetratricopeptide repeat domain 26	NM_001144923|TTC26|79989|tetratricopeptide repeat domain 26	NM_024926|TTC26|79989|tetratricopeptide repeat domain 26	AK295092|TTC26|79989|tetratricopeptide repeat domain 26	AK022633|TTC26|79989|tetratricopeptide repeat domain 26	AK300807|TTC26|79989|tetratricopeptide repeat domain 26	BC013912|TTC26|79989|tetratricopeptide repeat domain 26	AL137393|TTC26|79989|tetratricopeptide repeat domain 26	AK299132|TTC26|79989|tetratricopeptide repeat domain 26	BC034466|TTC26|79989|tetratricopeptide repeat domain 26	BC126331|TTC26|79989|tetratricopeptide repeat domain 26	BC130339|TTC26|79989|tetratricopeptide repeat domain 26	BC144151|TTC26|79989|tetratricopeptide repeat domain 26	AK293444|TTC26|79989|tetratricopeptide repeat domain 26
hg19_v1_chr7_-_112758604_112758608	0.0214963	LHX3,4.p2	BC065765|LOC401397|401397|uncharacterized LOC401397	BX537645|LOC401397|401397|uncharacterized LOC401397
hg19_v1_chr3_-_119582422_119582427	0.021143	LHX3,4.p2	AY123976|GSK3B|2932|glycogen synthase kinase 3 beta
hg19_v1_chr3_+_35683848_35683848	0.0210173	LHX3,4.p2	BC051828|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa	NM_016300|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa
hg19_v1_chr1_-_173886401_173886438	0.0209611	LHX3,4.p2	D29832|SERPINC1|462|serpin peptidase inhibitor, clade C (antithrombin), member 1
hg19_v1_chr2_+_162272800_162272843	0.0208555	LHX3,4.p2	AK297438|TBR1|10716|T-box, brain, 1	AK312567|TBR1|10716|T-box, brain, 1	AK226050|TBR1|10716|T-box, brain, 1	BC029289|TBR1|10716|T-box, brain, 1
hg19_v1_chr22_+_31366662_31366813	0.0208135	LHX3,4.p2	
hg19_v1_chr1_+_35851101_35851133	0.0206764	LHX3,4.p2	BX648067|ZMYM4|9202|zinc finger, MYM-type 4
hg19_v1_chr4_-_100212085_100212184	0.0206255	LHX3,4.p2	M12271|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide	BC074738|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide	BC117442|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide	BC126306|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide	AK290558|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide	M12963|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide	AK309597|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide	NM_000667|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide
hg19_v1_chr1_+_100316530_100316598	0.0206234	LHX3,4.p2	NM_000646|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	U84011|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	AB208867|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase
hg19_v1_chr1_+_92632608_92632608	0.0202431	LHX3,4.p2	NM_015237|KIAA1107|23285|KIAA1107
hg19_v1_chr20_+_23345020_23345020	0.019845	LHX3,4.p2	AB100265|GZF1|64412|GDNF-inducible zinc finger protein 1	BC125188|GZF1|64412|GDNF-inducible zinc finger protein 1	BC154409|GZF1|64412|GDNF-inducible zinc finger protein 1	NM_022482|GZF1|64412|GDNF-inducible zinc finger protein 1
hg19_v1_chr8_+_92114846_92114872	0.0197489	LHX3,4.p2	AK097393|LRRC69|100130742|leucine rich repeat containing 69	NM_001129890|LRRC69|100130742|leucine rich repeat containing 69	AK130865|LRRC69|100130742|leucine rich repeat containing 69
hg19_v1_chr18_+_46065367_46066179	0.0196934	LHX3,4.p2	AB007887|CTIF|9811|CBP80/20-dependent translation initiation factor	NM_001142397|CTIF|9811|CBP80/20-dependent translation initiation factor	NM_014772|CTIF|9811|CBP80/20-dependent translation initiation factor	BC042146|CTIF|9811|CBP80/20-dependent translation initiation factor
hg19_v1_chr14_+_45366426_45366571	0.0193728	LHX3,4.p2	NM_001017923|C14orf28|122525|chromosome 14 open reading frame 28	BC105030|C14orf28|122525|chromosome 14 open reading frame 28	BC105032|C14orf28|122525|chromosome 14 open reading frame 28	AF250395|C14orf28|122525|chromosome 14 open reading frame 28
hg19_v1_chr3_+_148415657_148415717	0.0192093	LHX3,4.p2	NM_000685|AGTR1|185|angiotensin II receptor, type 1	NM_004835|AGTR1|185|angiotensin II receptor, type 1	NM_009585|AGTR1|185|angiotensin II receptor, type 1	NM_031850|AGTR1|185|angiotensin II receptor, type 1	AK291541|AGTR1|185|angiotensin II receptor, type 1	BC068494|AGTR1|185|angiotensin II receptor, type 1	BC022447|AGTR1|185|angiotensin II receptor, type 1	M87290|AGTR1|185|angiotensin II receptor, type 1	S77410|AGTR1|185|angiotensin II receptor, type 1	X65699|AGTR1|185|angiotensin II receptor, type 1
hg19_v1_chrX_-_10544852_10544957	0.0190467	LHX3,4.p2	AF035360|MID1|4281|midline 1 (Opitz/BBB syndrome)	NM_001193277|MID1|4281|midline 1 (Opitz/BBB syndrome)	AY112903|MID1|4281|midline 1 (Opitz/BBB syndrome)
hg19_v1_chr6_-_133119625_133119777	0.0190267	LHX3,4.p2	AK124442|C6orf192|116843|chromosome 6 open reading frame 192	BC069570|C6orf192|116843|chromosome 6 open reading frame 192	AK293853|C6orf192|116843|chromosome 6 open reading frame 192	NM_052831|C6orf192|116843|chromosome 6 open reading frame 192	AK289918|C6orf192|116843|chromosome 6 open reading frame 192
hg19_v1_chr2_-_190044330_190044604	0.0189387	LHX3,4.p2	J04478|COL5A2|1290|collagen, type V, alpha 2	Y14690|COL5A2|1290|collagen, type V, alpha 2	AB209045|COL5A2|1290|collagen, type V, alpha 2	BC086874|COL5A2|1290|collagen, type V, alpha 2	AK297936|COL5A2|1290|collagen, type V, alpha 2	AK300146|COL5A2|1290|collagen, type V, alpha 2	M31365|COL5A2|1290|collagen, type V, alpha 2	NM_000393|COL5A2|1290|collagen, type V, alpha 2
hg19_v1_chr4_-_122148620_122148620	0.0188935	LHX3,4.p2	AK303192|TNIP3|79931|TNFAIP3 interacting protein 3	NM_001244764|TNIP3|79931|TNFAIP3 interacting protein 3
hg19_v1_chr6_+_28317687_28317765	0.018754	LHX3,4.p2	AK091225|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3	NM_001242894|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3	NM_001242895|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3	NM_024493|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3	AK122790|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3	AK313532|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3	BC006118|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3
hg19_v1_chr19_+_48949241_48949278	0.0187463	LHX3,4.p2	AF337808|GRWD1|83743|glutamate-rich WD repeat containing 1	BC002440|GRWD1|83743|glutamate-rich WD repeat containing 1	EF011614|GRWD1|83743|glutamate-rich WD repeat containing 1	AL713729|GRWD1|83743|glutamate-rich WD repeat containing 1	DQ892630|GRWD1|83743|glutamate-rich WD repeat containing 1	DQ895868|GRWD1|83743|glutamate-rich WD repeat containing 1	BC036281|GRWD1|83743|glutamate-rich WD repeat containing 1	BC047351|GRWD1|83743|glutamate-rich WD repeat containing 1
hg19_v1_chr12_-_102874340_102874344	0.0185941	LHX3,4.p2	M11568|IGF1|3479|insulin-like growth factor 1 (somatomedin C)
hg19_v1_chr8_-_90996785_90996879	0.018364	LHX3,4.p2	BC143065|NBN|4683|nibrin	BC143066|NBN|4683|nibrin	BC108650|NBN|4683|nibrin	BC016762|NBN|4683|nibrin	BC005293|NBN|4683|nibrin	AF058696|NBN|4683|nibrin	AF051334|NBN|4683|nibrin	AK223256|NBN|4683|nibrin	BC146797|NBN|4683|nibrin	BC136802|NBN|4683|nibrin	BC136803|NBN|4683|nibrin	BC144413|NBN|4683|nibrin
hg19_v1_chr20_+_30697512_30697570	0.0181134	LHX3,4.p2	AK126534|TM9SF4|9777|transmembrane 9 superfamily protein member 4	AK294980|TM9SF4|9777|transmembrane 9 superfamily protein member 4	AK296500|TM9SF4|9777|transmembrane 9 superfamily protein member 4	AK302439|TM9SF4|9777|transmembrane 9 superfamily protein member 4	BC021107|TM9SF4|9777|transmembrane 9 superfamily protein member 4	D87444|TM9SF4|9777|transmembrane 9 superfamily protein member 4
hg19_v1_chr1_-_216896640_216896813	0.0180655	LHX3,4.p2	HQ692853|ESRRG|2104|estrogen-related receptor gamma	AF117255|ESRRG|2104|estrogen-related receptor gamma	BC008218|ESRRG|2104|estrogen-related receptor gamma	AY388456|ESRRG|2104|estrogen-related receptor gamma	AK291647|ESRRG|2104|estrogen-related receptor gamma	AB020639|ESRRG|2104|estrogen-related receptor gamma	AK290945|ESRRG|2104|estrogen-related receptor gamma	BC064700|ESRRG|2104|estrogen-related receptor gamma	NM_001243515|ESRRG|2104|estrogen-related receptor gamma	NM_001243518|ESRRG|2104|estrogen-related receptor gamma	NM_001243519|ESRRG|2104|estrogen-related receptor gamma	NM_001438|ESRRG|2104|estrogen-related receptor gamma
hg19_v1_chr2_-_234474197_234474235	0.0180265	LHX3,4.p2	AK001647|USP40|55230|ubiquitin specific peptidase 40	AJ583821|USP40|55230|ubiquitin specific peptidase 40	NM_018218|USP40|55230|ubiquitin specific peptidase 40
hg19_v1_chr10_+_115524577_115524577	0.0179582	LHX3,4.p2	BC037870|C10orf81|79949|chromosome 10 open reading frame 81	FJ236306|C10orf81|79949|chromosome 10 open reading frame 81	NM_182601|C10orf81|79949|chromosome 10 open reading frame 81
hg19_v1_chr13_-_24007822_24007859	0.0178712	LHX3,4.p2	NM_014363|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v1_chr12_-_50595303_50595315	0.0177155	LHX3,4.p2	AK023649|LIMA1|51474|LIM domain and actin binding 1	AF157325|LIMA1|51474|LIM domain and actin binding 1	NM_001243775|LIMA1|51474|LIM domain and actin binding 1
hg19_v1_chr11_+_65266980_65267204	0.0174458	LHX3,4.p2	
hg19_v1_chr2_+_183608329_183608371	0.0172422	LHX3,4.p2	AK074905|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v1_chr6_+_34204928_34204935	0.0171602	LHX3,4.p2	M23614|HMGA1|3159|high mobility group AT-hook 1	M23615|HMGA1|3159|high mobility group AT-hook 1
hg19_v1_chr2_-_55559749_55559823	0.0169038	LHX3,4.p2	BC056885|CCDC88A|55704|coiled-coil domain containing 88A
hg19_v1_chr1_+_167691156_167691500	0.0168806	LHX3,4.p2	NM_001146191|MPZL1|9019|myelin protein zero-like 1	NM_003953|MPZL1|9019|myelin protein zero-like 1	NM_024569|MPZL1|9019|myelin protein zero-like 1	AK297112|MPZL1|9019|myelin protein zero-like 1	AK075334|MPZL1|9019|myelin protein zero-like 1	AK307250|MPZL1|9019|myelin protein zero-like 1	AK291249|MPZL1|9019|myelin protein zero-like 1	AY359019|MPZL1|9019|myelin protein zero-like 1	AF181660|MPZL1|9019|myelin protein zero-like 1	AF478447|MPZL1|9019|myelin protein zero-like 1	BC000984|MPZL1|9019|myelin protein zero-like 1	BC007881|MPZL1|9019|myelin protein zero-like 1	AF095727|MPZL1|9019|myelin protein zero-like 1	AF087020|MPZL1|9019|myelin protein zero-like 1	AF092425|MPZL1|9019|myelin protein zero-like 1	AF095726|MPZL1|9019|myelin protein zero-like 1	AK315546|MPZL1|9019|myelin protein zero-like 1	AF239756|MPZL1|9019|myelin protein zero-like 1	BT019542|MPZL1|9019|myelin protein zero-like 1	CR542160|MPZL1|9019|myelin protein zero-like 1	HQ447352|MPZL1|9019|myelin protein zero-like 1
hg19_v1_chr7_-_26232148_26232154	0.0167617	LHX3,4.p2	BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1
hg19_v1_chr15_-_75918718_75918718	0.0167346	LHX3,4.p2	NM_001042588|SNUPN|10073|snurportin 1
hg19_v1_chr16_-_15736964_15737022	0.016714	LHX3,4.p2	BC137165|KIAA0430|9665|KIAA0430	BC137170|KIAA0430|9665|KIAA0430	BC144514|KIAA0430|9665|KIAA0430	BC144515|KIAA0430|9665|KIAA0430	AK302667|KIAA0430|9665|KIAA0430	AK095840|KIAA0430|9665|KIAA0430	BC064914|KIAA0430|9665|KIAA0430	NM_001184998|KIAA0430|9665|KIAA0430	NM_001184999|KIAA0430|9665|KIAA0430	NM_014647|KIAA0430|9665|KIAA0430
hg19_v1_chr7_-_112726143_112726848	0.0165699	LHX3,4.p2	AK297464|GPR85|54329|G protein-coupled receptor 85	AK312587|GPR85|54329|G protein-coupled receptor 85	NM_001146266|GPR85|54329|G protein-coupled receptor 85	AL161959|GPR85|54329|G protein-coupled receptor 85	NM_001146267|GPR85|54329|G protein-coupled receptor 85
hg19_v1_chr18_+_616671_616719	0.0164983	LHX3,4.p2	DQ980621|CLUL1|27098|clusterin-like 1 (retinal)	NM_199167|CLUL1|27098|clusterin-like 1 (retinal)	AF395889|CLUL1|27098|clusterin-like 1 (retinal)	D63813|CLUL1|27098|clusterin-like 1 (retinal)
hg19_v1_chr17_-_1248346_1248366	0.0163538	LHX3,4.p2	L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
hg19_v1_chr7_-_134001749_134001826	0.0162613	LHX3,4.p2	AB052892|SLC35B4|84912|solute carrier family 35, member B4	NM_032826|SLC35B4|84912|solute carrier family 35, member B4
hg19_v1_chr8_+_54764367_54764459	0.0160466	LHX3,4.p2	AY046538|RGS20|8601|regulator of G-protein signaling 20	NM_170587|RGS20|8601|regulator of G-protein signaling 20	AF366054|RGS20|8601|regulator of G-protein signaling 20	AF366055|RGS20|8601|regulator of G-protein signaling 20	AF366056|RGS20|8601|regulator of G-protein signaling 20
hg19_v1_chr5_+_95066628_95067109	0.0159692	LHX3,4.p2	BC047884|RHOBTB3|22836|Rho-related BTB domain containing 3	NM_014899|RHOBTB3|22836|Rho-related BTB domain containing 3	BC020231|RHOBTB3|22836|Rho-related BTB domain containing 3	BC013169|RHOBTB3|22836|Rho-related BTB domain containing 3	BC041337|RHOBTB3|22836|Rho-related BTB domain containing 3	AB020685|RHOBTB3|22836|Rho-related BTB domain containing 3	AK290034|RHOBTB3|22836|Rho-related BTB domain containing 3
hg19_v1_chr4_+_3315873_3315873	0.015852	LHX3,4.p2	AF030111|RGS12|6002|regulator of G-protein signaling 12	NM_002926|RGS12|6002|regulator of G-protein signaling 12	NM_198229|RGS12|6002|regulator of G-protein signaling 12
hg19_v1_chr14_-_35344852_35344852	0.0158131	LHX3,4.p2	AB032252|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A	NM_013448|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A	NM_182648|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A
hg19_v1_chr20_-_45976626_45976669	0.0157497	LHX3,4.p2	DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8
hg19_v1_chrX_+_150565655_150565669	0.0157369	LHX3,4.p2	NM_001017980|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
hg19_v1_chr1_+_24840800_24840918	0.0156992	LHX3,4.p2	HQ317426|RCAN3|11123|RCAN family member 3	JN203053|RCAN3|11123|RCAN family member 3	NM_001251980|RCAN3|11123|RCAN family member 3	NM_001251982|RCAN3|11123|RCAN family member 3	NM_001251985|RCAN3|11123|RCAN family member 3	EF467309|RCAN3|11123|RCAN family member 3	EF431960|RCAN3|11123|RCAN family member 3	EF529733|RCAN3|11123|RCAN family member 3	AF176116|RCAN3|11123|RCAN family member 3	AY906854|RCAN3|11123|RCAN family member 3	DQ892434|RCAN3|11123|RCAN family member 3	DQ895645|RCAN3|11123|RCAN family member 3	AF176117|RCAN3|11123|RCAN family member 3
hg19_v1_chr8_+_128748476_128748505	0.0154943	LHX3,4.p2	AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)
hg19_v1_chr10_-_104262404_104262511	0.0154719	LHX3,4.p2	AM393135|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	DQ892689|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	DQ895934|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	BC026016|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	BC000693|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	Z14978|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	X82206|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK302072|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK312506|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK297362|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK297620|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	NM_005736|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v1_chr7_-_37488408_37488529	0.0154474	LHX3,4.p2	AL136787|ELMO1|9844|engulfment and cell motility 1	AK001084|ELMO1|9844|engulfment and cell motility 1	AK314349|ELMO1|9844|engulfment and cell motility 1
hg19_v1_chr1_+_183774214_183774368	0.0154348	LHX3,4.p2	AK311716|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1	AF186779|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1	AB023176|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1	AK304293|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1	BC039250|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1	AK311701|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1
hg19_v1_chr2_-_10942642_10942767	0.0154269	LHX3,4.p2	AK225496|PDIA6|10130|protein disulfide isomerase family A, member 6	U79278|PDIA6|10130|protein disulfide isomerase family A, member 6
hg19_v1_chr12_+_29376596_29376746	0.01521	LHX3,4.p2	BC022267|FAR2|55711|fatty acyl CoA reductase 2	NM_018099|FAR2|55711|fatty acyl CoA reductase 2	AK027756|FAR2|55711|fatty acyl CoA reductase 2	AK129857|FAR2|55711|fatty acyl CoA reductase 2	AK001927|FAR2|55711|fatty acyl CoA reductase 2
hg19_v1_chr4_+_3371723_3371723	0.0151941	LHX3,4.p2	AF030109|RGS12|6002|regulator of G-protein signaling 12	NM_198227|RGS12|6002|regulator of G-protein signaling 12
hg19_v1_chr10_-_21786205_21786246	0.0151614	LHX3,4.p2	NM_001010911|C10orf114|399726|chromosome 10 open reading frame 114
hg19_v1_chr7_+_134671244_134671327	0.0150612	LHX3,4.p2	AK302827|AGBL3|340351|ATP/GTP binding protein-like 3	NM_178563|AGBL3|340351|ATP/GTP binding protein-like 3	BC030651|AGBL3|340351|ATP/GTP binding protein-like 3	AL832281|AGBL3|340351|ATP/GTP binding protein-like 3	AK023045|AGBL3|340351|ATP/GTP binding protein-like 3
hg19_v1_chr1_-_89664510_89664632	0.0149584	LHX3,4.p2	AK304245|GBP4|115361|guanylate binding protein 4	AF288814|GBP4|115361|guanylate binding protein 4	AK131094|GBP4|115361|guanylate binding protein 4	AL832576|GBP4|115361|guanylate binding protein 4	BC070055|GBP4|115361|guanylate binding protein 4	BC017889|GBP4|115361|guanylate binding protein 4	AK312417|GBP4|115361|guanylate binding protein 4	BC008421|GBP4|115361|guanylate binding protein 4	NM_052941|GBP4|115361|guanylate binding protein 4
hg19_v1_chr2_-_183387063_183387506	0.0149583	LHX3,4.p2	AK295657|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	DQ892369|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	DQ893372|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	DQ895578|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	DQ896694|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	AF110237|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	NM_005019|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	BC022480|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	AF110236|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	NM_001003683|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	U40370|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	AK294239|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent
hg19_v1_chr7_-_102920840_102920963	0.0149162	LHX3,4.p2	AK097711|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)	BC094802|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)	BC023575|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)
hg19_v1_chr3_-_147124595_147124595	0.0148709	LHX3,4.p2	NM_001243256|ZIC4|84107|Zic family member 4	NM_032153|ZIC4|84107|Zic family member 4
hg19_v1_chr14_-_23504353_23504428	0.0148515	LHX3,4.p2	NM_001144932|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5	NM_002797|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5	NM_001130725|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v1_chr10_-_69455926_69455948	0.0148387	LHX3,4.p2	AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3	AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3	NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3
hg19_v1_chr2_-_163695239_163695256	0.0146362	LHX3,4.p2	BC035815|KCNH7|90134|potassium voltage-gated channel, subfamily H (eag-related), member 7	NM_033272|KCNH7|90134|potassium voltage-gated channel, subfamily H (eag-related), member 7	NM_173162|KCNH7|90134|potassium voltage-gated channel, subfamily H (eag-related), member 7
hg19_v1_chr5_-_145522997_145523022	0.0144059	LHX3,4.p2	U56252|LARS|51520|leucyl-tRNA synthetase
hg19_v1_chr12_-_81991959_81992149	0.0143918	LHX3,4.p2	AK294505|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK297372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK299853|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_001220477|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_001220478|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v1_chr18_+_21269404_21269424	0.0143192	LHX3,4.p2	AK096422|LAMA3|3909|laminin, alpha 3
hg19_v1_chr4_-_155511838_155511898	0.014284	LHX3,4.p2	BC098280|FGA|2243|fibrinogen alpha chain	BC099706|FGA|2243|fibrinogen alpha chain	BC099720|FGA|2243|fibrinogen alpha chain	BC101935|FGA|2243|fibrinogen alpha chain	J00127|FGA|2243|fibrinogen alpha chain	AK290559|FGA|2243|fibrinogen alpha chain	J00128|FGA|2243|fibrinogen alpha chain	BC020764|FGA|2243|fibrinogen alpha chain	BC070246|FGA|2243|fibrinogen alpha chain	BC105803|FGA|2243|fibrinogen alpha chain	NM_000508|FGA|2243|fibrinogen alpha chain	NM_021871|FGA|2243|fibrinogen alpha chain
hg19_v1_chr22_+_46731297_46731321	0.0142115	LHX3,4.p2	NM_018006|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AY062123|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	DQ309998|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	DQ309999|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	DQ310000|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
hg19_v1_chrX_+_77166223_77166262	0.0142093	LHX3,4.p2	AB117973|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide	AB208828|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide
hg19_v1_chr9_+_79968344_79968352	0.0141021	LHX3,4.p2	AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)
hg19_v1_chr3_-_168864066_168864092	0.0140379	LHX3,4.p2	BC130520|MECOM|2122|MDS1 and EVI1 complex locus	BC143951|MECOM|2122|MDS1 and EVI1 complex locus	BC143952|MECOM|2122|MDS1 and EVI1 complex locus	AF164154|MECOM|2122|MDS1 and EVI1 complex locus	AF164155|MECOM|2122|MDS1 and EVI1 complex locus	AF164156|MECOM|2122|MDS1 and EVI1 complex locus	AF164157|MECOM|2122|MDS1 and EVI1 complex locus	NM_001105077|MECOM|2122|MDS1 and EVI1 complex locus	NM_001163999|MECOM|2122|MDS1 and EVI1 complex locus	NM_005241|MECOM|2122|MDS1 and EVI1 complex locus	X54989|MECOM|2122|MDS1 and EVI1 complex locus
hg19_v1_chr22_-_36236264_36236318	0.0139398	LHX3,4.p2	AY960684|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	CU013159|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	CU013447|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ891720|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ894897|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ894898|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v1_chr3_+_50273645_50273646	0.01385	LHX3,4.p2	NM_002070|GNAI2|2771|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
hg19_v1_chr3_-_157221127_157221135	0.0138341	LHX3,4.p2	BC111017|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)	AB051479|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_001167911|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_001167912|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)
hg19_v1_chr6_-_26108320_26108364	0.013797	LHX3,4.p2	EU446962|HIST1H1T|3010|histone cluster 1, H1t	HQ258096|HIST1H1T|3010|histone cluster 1, H1t	BC130350|HIST1H1T|3010|histone cluster 1, H1t	BC069517|HIST1H1T|3010|histone cluster 1, H1t	NM_005323|HIST1H1T|3010|histone cluster 1, H1t
hg19_v1_chr1_+_151630710_151630762	0.0137215	LHX3,4.p2	BC107862|SNX27|81609|sorting nexin family member 27
hg19_v1_chr1_-_91182777_91182793	0.0134979	LHX3,4.p2	BC126439|BARHL2|343472|BarH-like homeobox 2	BC126441|BARHL2|343472|BarH-like homeobox 2	AY338397|BARHL2|343472|BarH-like homeobox 2	NM_020063|BARHL2|343472|BarH-like homeobox 2
hg19_v1_chr1_+_155853546_155853601	0.0132956	LHX3,4.p2	AK026178|SYT11|23208|synaptotagmin XI
hg19_v1_chr2_+_185463292_185463319	0.0131113	LHX3,4.p2	BC142612|ZNF804A|91752|zinc finger protein 804A
hg19_v1_chr4_+_187070326_187070391	0.01281	LHX3,4.p2	NM_001006655|FAM149A|25854|family with sequence similarity 149, member A	AF173894|FAM149A|25854|family with sequence similarity 149, member A
hg19_v1_chrX_+_43515531_43515593	0.0126861	LHX3,4.p2	AK293926|MAOA|4128|monoamine oxidase A	AK291769|MAOA|4128|monoamine oxidase A	BC008064|MAOA|4128|monoamine oxidase A	DQ890676|MAOA|4128|monoamine oxidase A	DQ893857|MAOA|4128|monoamine oxidase A	BT006651|MAOA|4128|monoamine oxidase A
hg19_v1_chr11_+_101918168_101918198	0.0126221	LHX3,4.p2	NM_001195005|C11orf70|85016|chromosome 11 open reading frame 70	NM_032930|C11orf70|85016|chromosome 11 open reading frame 70	AK094851|C11orf70|85016|chromosome 11 open reading frame 70	BC054869|C11orf70|85016|chromosome 11 open reading frame 70	BC006128|C11orf70|85016|chromosome 11 open reading frame 70
hg19_v1_chr4_-_186732047_186732047	0.0125764	LHX3,4.p2	AK293400|SORBS2|8470|sorbin and SH3 domain containing 2	NM_001145672|SORBS2|8470|sorbin and SH3 domain containing 2
hg19_v1_chr12_+_133757994_133758205	0.0122507	LHX3,4.p2	AF317549|ZNF268|10795|zinc finger protein 268	NM_001165883|ZNF268|10795|zinc finger protein 268	NM_001165884|ZNF268|10795|zinc finger protein 268	NM_001165885|ZNF268|10795|zinc finger protein 268	NM_001165886|ZNF268|10795|zinc finger protein 268	NM_001165887|ZNF268|10795|zinc finger protein 268	NM_003415|ZNF268|10795|zinc finger protein 268	NM_152943|ZNF268|10795|zinc finger protein 268	BC110542|ZNF268|10795|zinc finger protein 268	NM_001165881|ZNF268|10795|zinc finger protein 268	NM_001165882|ZNF268|10795|zinc finger protein 268	AK027712|ZNF268|10795|zinc finger protein 268	AF432217|ZNF268|10795|zinc finger protein 268	BC058548|ZNF268|10795|zinc finger protein 268	AF141655|ZNF268|10795|zinc finger protein 268	AF385187|ZNF268|10795|zinc finger protein 268	AY583691|ZNF268|10795|zinc finger protein 268	DQ057356|ZNF268|10795|zinc finger protein 268	DQ057357|ZNF268|10795|zinc finger protein 268	DQ057358|ZNF268|10795|zinc finger protein 268	DQ057359|ZNF268|10795|zinc finger protein 268	DQ057360|ZNF268|10795|zinc finger protein 268	DQ057361|ZNF268|10795|zinc finger protein 268
hg19_v1_chr3_-_111314181_111314181	0.0122129	LHX3,4.p2	NM_024508|ZBED2|79413|zinc finger, BED-type containing 2
hg19_v1_chr10_-_98325100_98325183	0.0121552	LHX3,4.p2	AK000756|TM9SF3|56889|transmembrane 9 superfamily member 3
hg19_v1_chr7_+_141695678_141695706	0.0121204	LHX3,4.p2	AF016833|MGAM|8972|maltase-glucoamylase (alpha-glucosidase)	NM_004668|MGAM|8972|maltase-glucoamylase (alpha-glucosidase)	BC120872|MGAM|8972|maltase-glucoamylase (alpha-glucosidase)
hg19_v1_chr2_-_55199894_55199922	0.0120398	LHX3,4.p2	
hg19_v1_chr16_-_66583587_66583780	0.011671	LHX3,4.p2	U80628|TK2|7084|thymidine kinase 2, mitochondrial	AK302976|TK2|7084|thymidine kinase 2, mitochondrial
hg19_v1_chr10_-_115423640_115423804	0.0116368	LHX3,4.p2	AM392642|NRAP|4892|nebulin-related anchoring protein	AM393530|NRAP|4892|nebulin-related anchoring protein	BC126407|NRAP|4892|nebulin-related anchoring protein	BC143751|NRAP|4892|nebulin-related anchoring protein	AL831980|NRAP|4892|nebulin-related anchoring protein	AL832025|NRAP|4892|nebulin-related anchoring protein	AL832330|NRAP|4892|nebulin-related anchoring protein	BX640682|NRAP|4892|nebulin-related anchoring protein	AY177620|NRAP|4892|nebulin-related anchoring protein	AY177621|NRAP|4892|nebulin-related anchoring protein	BX641052|NRAP|4892|nebulin-related anchoring protein	BC005933|NRAP|4892|nebulin-related anchoring protein	BC017866|NRAP|4892|nebulin-related anchoring protein	BC058825|NRAP|4892|nebulin-related anchoring protein	BC070130|NRAP|4892|nebulin-related anchoring protein	AK056969|NRAP|4892|nebulin-related anchoring protein	AY081943|NRAP|4892|nebulin-related anchoring protein	NM_006175|NRAP|4892|nebulin-related anchoring protein	NM_198060|NRAP|4892|nebulin-related anchoring protein
hg19_v1_chr16_-_66583952_66584033	0.0114644	LHX3,4.p2	AK294627|TK2|7084|thymidine kinase 2, mitochondrial	AK295808|TK2|7084|thymidine kinase 2, mitochondrial	AK316226|TK2|7084|thymidine kinase 2, mitochondrial
hg19_v1_chr6_+_52935770_52935770	0.0114586	LHX3,4.p2	AF176704|FBXO9|26268|F-box protein 9	NM_012347|FBXO9|26268|F-box protein 9
hg19_v1_chr11_-_126870654_126870667	0.0109934	LHX3,4.p2	AB058770|KIRREL3|84623|kin of IRRE like 3 (Drosophila)	BC071838|KIRREL3|84623|kin of IRRE like 3 (Drosophila)
hg19_v1_chr11_+_22696381_22696415	0.0109645	LHX3,4.p2	CR450285|GAS2|2620|growth arrest-specific 2
hg19_v1_chr1_+_20208923_20209003	0.0107171	LHX3,4.p2	
hg19_v1_chr1_-_154578775_154578775	0.0106644	LHX3,4.p2	NM_001193495|ADAR|103|adenosine deaminase, RNA-specific	X79448|ADAR|103|adenosine deaminase, RNA-specific
hg19_v1_chr1_+_160370363_160370395	0.010652	LHX3,4.p2	NM_020335|VANGL2|57216|vang-like 2 (van gogh, Drosophila)
hg19_v1_chr14_+_102276125_102276241	0.0106384	LHX3,4.p2	NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma	NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma	NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma	AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma	Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma	U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma	BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma
hg19_v1_chr1_-_32385258_32385258	0.010587	LHX3,4.p2	NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2	NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2
hg19_v1_chr12_+_54410641_54410714	0.0105008	LHX3,4.p2	NM_014620|HOXC4|3221|homeobox C4	NM_153693|HOXC6|3223|homeobox C6	X07495|HOXC4|3221|homeobox C4
hg19_v1_chr2_+_47596447_47596644	0.0103906	LHX3,4.p2	AK026585|EPCAM|4072|epithelial cell adhesion molecule	BC014785|EPCAM|4072|epithelial cell adhesion molecule	M26481|EPCAM|4072|epithelial cell adhesion molecule	M32325|EPCAM|4072|epithelial cell adhesion molecule	X14758|EPCAM|4072|epithelial cell adhesion molecule	M33011|EPCAM|4072|epithelial cell adhesion molecule	M32306|EPCAM|4072|epithelial cell adhesion molecule	DQ891338|EPCAM|4072|epithelial cell adhesion molecule	DQ894520|EPCAM|4072|epithelial cell adhesion molecule	CR542259|EPCAM|4072|epithelial cell adhesion molecule	CR542283|EPCAM|4072|epithelial cell adhesion molecule
hg19_v1_chr3_-_97754147_97754147	0.0103025	LHX3,4.p2	CR749263|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3	NM_001105580|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3
hg19_v1_chr8_-_29207795_29208346	0.0102702	LHX3,4.p2	EU831463|DUSP4|1846|dual specificity phosphatase 4	EU831550|DUSP4|1846|dual specificity phosphatase 4	S80632|DUSP4|1846|dual specificity phosphatase 4	U48807|DUSP4|1846|dual specificity phosphatase 4	BC002671|DUSP4|1846|dual specificity phosphatase 4	U21108|DUSP4|1846|dual specificity phosphatase 4	BC014565|DUSP4|1846|dual specificity phosphatase 4	AK314820|DUSP4|1846|dual specificity phosphatase 4	NM_001394|DUSP4|1846|dual specificity phosphatase 4
hg19_v1_chr2_-_37076016_37076045	0.0102564	LHX3,4.p2	BC015406|STRN|6801|striatin, calmodulin binding protein
hg19_v1_chr2_-_122159140_122159171	0.0102419	LHX3,4.p2	CR749627|CLASP1|23332|cytoplasmic linker associated protein 1
hg19_v1_chr3_+_50273648_50273673	0.0102023	LHX3,4.p2	BC014627|GNAI2|2771|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2	X04828|GNAI2|2771|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
hg19_v1_chr4_-_10041833_10042011	0.0102011	LHX3,4.p2	AK310895|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9	BC018897|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001001290|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9	AK096819|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9
hg19_v1_chr4_+_72204769_72204965	0.0101192	LHX3,4.p2	BC030977|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4	NM_003759|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4	AF007216|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4	AK308038|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4
hg19_v1_chr1_-_36789754_36789754	0.0101109	LHX3,4.p2	AK001509|FAM176B|55194|family with sequence similarity 176, member B	NM_018166|FAM176B|55194|family with sequence similarity 176, member B
hg19_v1_chr5_+_132432880_132432902	0.00993249	LHX3,4.p2	AK315862|HSPA4|3308|heat shock 70kDa protein 4
hg19_v1_chr1_+_111413820_111413838	0.00990757	LHX3,4.p2	NM_001040033|CD53|963|CD53 molecule	BC035456|CD53|963|CD53 molecule
hg19_v1_chr11_-_118900078_118900277	0.00985015	LHX3,4.p2	AF110819|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AF110820|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AF110821|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AF110822|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	CR456733|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AY423732|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	Y15409|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	BC064563|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	BC002400|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	BC003589|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4	NM_001164280|SLC37A4|2542|solute carrier family 37 (glucose-6-phosphate transporter), member 4
hg19_v1_chr1_+_36387788_36387930	0.00981362	LHX3,4.p2	AK000326|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1
hg19_v1_chr15_+_58724174_58724231	0.00971133	LHX3,4.p2	NM_000236|LIPC|3990|lipase, hepatic	X07228|LIPC|3990|lipase, hepatic	AK293324|LIPC|3990|lipase, hepatic	AK309448|LIPC|3990|lipase, hepatic	D83548|LIPC|3990|lipase, hepatic	BC132825|LIPC|3990|lipase, hepatic	BC136495|LIPC|3990|lipase, hepatic	J03895|LIPC|3990|lipase, hepatic	J03540|LIPC|3990|lipase, hepatic	HQ258274|LIPC|3990|lipase, hepatic
hg19_v1_chr9_+_6720862_6720862	0.00969464	LHX3,4.p2	AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C	NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C
hg19_v1_chr7_+_91924291_91924419	0.00966476	LHX3,4.p2	
hg19_v1_chr1_+_186265404_186265410	0.00965183	LHX3,4.p2	NM_001127708|PRG4|10216|proteoglycan 4	NM_001127709|PRG4|10216|proteoglycan 4	NM_001127710|PRG4|10216|proteoglycan 4	NM_005807|PRG4|10216|proteoglycan 4	AK301343|PRG4|10216|proteoglycan 4	AK057197|PRG4|10216|proteoglycan 4	AK297718|PRG4|10216|proteoglycan 4	AK301487|PRG4|10216|proteoglycan 4	AK308235|PRG4|10216|proteoglycan 4
hg19_v1_chr12_-_48745020_48745028	0.00954257	LHX3,4.p2	AK298064|ZNF641|121274|zinc finger protein 641	NM_001172682|ZNF641|121274|zinc finger protein 641
hg19_v1_chr14_-_69262959_69263010	0.009462	LHX3,4.p2	NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1
hg19_v1_chr13_-_45048436_45048436	0.00931171	LHX3,4.p2	NM_001243798|TSC22D1|8848|TSC22 domain family, member 1
hg19_v1_chr6_-_24877453_24877582	0.0091933	LHX3,4.p2	U49187|FAM65B|9750|family with sequence similarity 65, member B	AK300138|FAM65B|9750|family with sequence similarity 65, member B	BC001232|FAM65B|9750|family with sequence similarity 65, member B	NM_015864|FAM65B|9750|family with sequence similarity 65, member B
hg19_v1_chr7_-_140714780_140714792	0.00918567	LHX3,4.p2	NM_053035|MRPS33|51650|mitochondrial ribosomal protein S33
hg19_v1_chr2_+_102979096_102979120	0.00917715	LHX3,4.p2	BC069575|IL18R1|8809|interleukin 18 receptor 1	BC093975|IL18R1|8809|interleukin 18 receptor 1	BC093977|IL18R1|8809|interleukin 18 receptor 1	BC143403|IL18R1|8809|interleukin 18 receptor 1	BC143405|IL18R1|8809|interleukin 18 receptor 1	NM_003855|IL18R1|8809|interleukin 18 receptor 1	U43672|IL18R1|8809|interleukin 18 receptor 1	AY192162|IL18R1|8809|interleukin 18 receptor 1
hg19_v1_chr7_+_86273219_86273231	0.00916821	LHX3,4.p2	BC041407|GRM3|2913|glutamate receptor, metabotropic 3	NM_000840|GRM3|2913|glutamate receptor, metabotropic 3
hg19_v1_chrM_+_5769_6092	0.00903407	LHX3,4.p2	
hg19_v1_chr17_-_62340571_62340601	0.00899021	LHX3,4.p2	AL832371|TEX2|55852|testis expressed 2	BC040521|TEX2|55852|testis expressed 2	AL834251|TEX2|55852|testis expressed 2	AK091214|TEX2|55852|testis expressed 2
hg19_v1_chrX_+_48687282_48687282	0.00897988	LHX3,4.p2	AB093575|ERAS|3266|ES cell expressed Ras	NM_181532|ERAS|3266|ES cell expressed Ras
hg19_v1_chr3_+_173116243_173116243	0.0089615	LHX3,4.p2	BC032555|NLGN1|22871|neuroligin 1	NM_014932|NLGN1|22871|neuroligin 1
hg19_v1_chr20_+_3776905_3777106	0.00876968	LHX3,4.p2	S78187|CDC25B|994|cell division cycle 25 homolog B (S. pombe)	Z68092|CDC25B|994|cell division cycle 25 homolog B (S. pombe)	BC006395|CDC25B|994|cell division cycle 25 homolog B (S. pombe)	M81934|CDC25B|994|cell division cycle 25 homolog B (S. pombe)
hg19_v1_chr16_-_28634873_28634906	0.00871346	LHX3,4.p2	NM_177536|SULT1A1|6817|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1
hg19_v1_chr10_+_91087601_91087771	0.00856212	LHX3,4.p2	NM_001549|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3	AK290427|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3	AF083470|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3	AK312675|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3	U52513|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3
hg19_v1_chr9_+_4839763_4839773	0.00850572	LHX3,4.p2	EF553527|RCL1|10171|RNA terminal phosphate cyclase-like 1
hg19_v1_chr20_+_5986560_5986760	0.00833188	LHX3,4.p2	NM_019095|CRLS1|54675|cardiolipin synthase 1
hg19_v1_chr3_+_156544075_156544147	0.008297	LHX3,4.p2	AK094480|LEKR1|389170|leucine, glutamate and lysine rich 1	AK131473|LEKR1|389170|leucine, glutamate and lysine rich 1	NM_001004316|LEKR1|389170|leucine, glutamate and lysine rich 1	BC041967|LEKR1|389170|leucine, glutamate and lysine rich 1	NM_001193283|LEKR1|389170|leucine, glutamate and lysine rich 1
hg19_v1_chr17_-_39341126_39341146	0.0082408	LHX3,4.p2	BC103845|KRTAP4-1|85285|keratin associated protein 4-1	BC103846|KRTAP4-1|85285|keratin associated protein 4-1	AJ406942|KRTAP4-1|85285|keratin associated protein 4-1	NM_033060|KRTAP4-1|85285|keratin associated protein 4-1
hg19_v1_chr3_+_157827849_157827933	0.0081356	LHX3,4.p2	AK290334|RSRC1|51319|arginine/serine-rich coiled-coil 1	BC006982|RSRC1|51319|arginine/serine-rich coiled-coil 1	NM_016625|RSRC1|51319|arginine/serine-rich coiled-coil 1	AF208853|RSRC1|51319|arginine/serine-rich coiled-coil 1	BC010357|RSRC1|51319|arginine/serine-rich coiled-coil 1
hg19_v1_chrX_+_114827818_114827919	0.00792347	LHX3,4.p2	NM_001136025|PLS3|5358|plastin 3	NM_001172335|PLS3|5358|plastin 3	AK298530|PLS3|5358|plastin 3	AK300575|PLS3|5358|plastin 3	BC039049|PLS3|5358|plastin 3
hg19_v1_chr5_+_73109342_73109359	0.00782835	LHX3,4.p2	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor	NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor
hg19_v1_chr5_+_115387162_115387162	0.00775067	LHX3,4.p2	NM_001195581|LOC644100|644100|uncharacterized LOC644100
hg19_v1_chr12_-_16758312_16758338	0.00762329	LHX3,4.p2	NM_001243611|LMO3|55885|LIM domain only 3 (rhombotin-like 2)
hg19_v1_chr2_+_47596286_47596399	0.00757686	LHX3,4.p2	NM_002354|EPCAM|4072|epithelial cell adhesion molecule
hg19_v1_chr2_+_209271555_209271768	0.00756778	LHX3,4.p2	BC036811|PTH2R|5746|parathyroid hormone 2 receptor	NM_005048|PTH2R|5746|parathyroid hormone 2 receptor	U25128|PTH2R|5746|parathyroid hormone 2 receptor	HQ257935|PTH2R|5746|parathyroid hormone 2 receptor	AY497546|PTH2R|5746|parathyroid hormone 2 receptor
hg19_v1_chr5_+_40909558_40909606	0.00745589	LHX3,4.p2	AK290349|C7|730|complement component 7	Y11720|C7|730|complement component 7	NM_000587|C7|730|complement component 7	BC065305|C7|730|complement component 7	BC041807|C7|730|complement component 7
hg19_v1_chr11_-_67141647_67141647	0.00733502	LHX3,4.p2	AK298052|CLCF1|23529|cardiotrophin-like cytokine factor 1	NM_001166212|CLCF1|23529|cardiotrophin-like cytokine factor 1
hg19_v1_chr7_-_112758611_112758647	0.00731711	LHX3,4.p2	BC107860|LOC401397|401397|uncharacterized LOC401397
hg19_v1_chr5_-_179498995_179499135	0.00725973	LHX3,4.p2	BC113864|RNF130|55819|ring finger protein 130	BC114472|RNF130|55819|ring finger protein 130	AB209800|RNF130|55819|ring finger protein 130	AY083998|RNF130|55819|ring finger protein 130	NM_018434|RNF130|55819|ring finger protein 130	BC108306|RNF130|55819|ring finger protein 130
hg19_v1_chr11_+_65769409_65769549	0.00706146	LHX3,4.p2	AF068235|BANF1|8815|barrier to autointegration factor 1	NM_001143985|BANF1|8815|barrier to autointegration factor 1	NM_003860|BANF1|8815|barrier to autointegration factor 1
hg19_v1_chr18_-_51750998_51751157	0.00705415	LHX3,4.p2	AF072242|MBD2|8932|methyl-CpG binding domain protein 2	NM_003927|MBD2|8932|methyl-CpG binding domain protein 2	NM_015832|MBD2|8932|methyl-CpG binding domain protein 2
hg19_v1_chr19_+_48949217_48949239	0.00703824	LHX3,4.p2	AK131055|GRWD1|83743|glutamate-rich WD repeat containing 1	AK315625|GRWD1|83743|glutamate-rich WD repeat containing 1
hg19_v1_chr10_+_72163914_72163931	0.00693083	LHX3,4.p2	BC050633|EIF4EBP2|1979|eukaryotic translation initiation factor 4E binding protein 2
hg19_v1_chr1_+_40862471_40862506	0.00684689	LHX3,4.p2	AK316218|SMAP2|64744|small ArfGAP2	NM_001198980|SMAP2|64744|small ArfGAP2	AK298702|SMAP2|64744|small ArfGAP2
hg19_v1_chr4_+_95128750_95128872	0.00682118	LHX3,4.p2	NM_001128430|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK027490|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	BC017953|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AB032948|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v1_chr11_-_121986800_121986922	0.00673622	LHX3,4.p2	BC130361|BLID|414899|BH3-like motif containing, cell death inducer	BC130363|BLID|414899|BH3-like motif containing, cell death inducer	AF303179|BLID|414899|BH3-like motif containing, cell death inducer	NM_001001786|BLID|414899|BH3-like motif containing, cell death inducer
hg19_v1_chr1_+_66797775_66797932	0.00671712	LHX3,4.p2	NM_001037339|PDE4B|5142|phosphodiesterase 4B, cAMP-specific	M97515|PDE4B|5142|phosphodiesterase 4B, cAMP-specific	L12686|PDE4B|5142|phosphodiesterase 4B, cAMP-specific
hg19_v1_chr9_+_131549561_131549632	0.00670772	LHX3,4.p2	AK289777|TBC1D13|54662|TBC1 domain family, member 13	BC150311|TBC1D13|54662|TBC1 domain family, member 13	AK123828|TBC1D13|54662|TBC1 domain family, member 13	BC014898|TBC1D13|54662|TBC1 domain family, member 13	BC132817|TBC1D13|54662|TBC1 domain family, member 13	BC136509|TBC1D13|54662|TBC1 domain family, member 13	AK001605|TBC1D13|54662|TBC1 domain family, member 13	BC140080|TBC1D13|54662|TBC1 domain family, member 13	BC143010|TBC1D13|54662|TBC1 domain family, member 13	HQ258408|TBC1D13|54662|TBC1 domain family, member 13	AB449899|TBC1D13|54662|TBC1 domain family, member 13
hg19_v1_chr15_-_100882105_100882182	0.00653409	LHX3,4.p2	AJ315735|ADAMTS17|170691|ADAM metallopeptidase with thrombospondin type 1 motif, 17	NM_139057|ADAMTS17|170691|ADAM metallopeptidase with thrombospondin type 1 motif, 17
hg19_v1_chr7_-_35225652_35225933	0.00651245	LHX3,4.p2	BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)	AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)
hg19_v1_chr14_+_55493837_55494021	0.00642101	LHX3,4.p2	NM_080867|SOCS4|122809|suppressor of cytokine signaling 4	NM_199421|SOCS4|122809|suppressor of cytokine signaling 4	BX161418|SOCS4|122809|suppressor of cytokine signaling 4	CR933659|SOCS4|122809|suppressor of cytokine signaling 4	BC060790|SOCS4|122809|suppressor of cytokine signaling 4	AK124083|SOCS4|122809|suppressor of cytokine signaling 4
hg19_v1_chr8_-_30670323_30670380	0.00617411	LHX3,4.p2	NM_001009552|PPP2CB|5516|protein phosphatase 2, catalytic subunit, beta isozyme
hg19_v1_chr6_+_134273307_134273422	0.00600052	LHX3,4.p2	NM_001253676|TBPL1|9519|TBP-like 1	AK292320|TBPL1|9519|TBP-like 1
hg19_v1_chr7_-_140714730_140714770	0.00588842	LHX3,4.p2	AF078858|MRPS33|51650|mitochondrial ribosomal protein S33	BC105793|MRPS33|51650|mitochondrial ribosomal protein S33
hg19_v1_chr2_-_37297372_37297516	0.00583094	LHX3,4.p2	BX538008|HEATR5B|54497|HEAT repeat containing 5B
hg19_v1_chrX_+_50027539_50027539	0.00578207	LHX3,4.p2	AJ314764|CCNB3|85417|cyclin B3	AJ314765|CCNB3|85417|cyclin B3	AJ314766|CCNB3|85417|cyclin B3	AJ416458|CCNB3|85417|cyclin B3	NM_033031|CCNB3|85417|cyclin B3	NM_033670|CCNB3|85417|cyclin B3
hg19_v1_chr17_-_18177716_18177777	0.00559043	LHX3,4.p2	AF086042|TOP3A|7156|topoisomerase (DNA) III alpha
hg19_v1_chr10_+_18549583_18549697	0.00557477	LHX3,4.p2	NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit	AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit	U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit
hg19_v1_chr4_+_2883636_2883767	0.00552211	LHX3,4.p2	AK025413|ADD1|118|adducin 1 (alpha)
hg19_v1_chr19_-_53662279_53662321	0.00547911	LHX3,4.p2	BC002938|ZNF347|84671|zinc finger protein 347	BC015611|ZNF347|84671|zinc finger protein 347	AY029765|ZNF347|84671|zinc finger protein 347	AK289994|ZNF347|84671|zinc finger protein 347	AK314603|ZNF347|84671|zinc finger protein 347	AK096623|ZNF347|84671|zinc finger protein 347	NM_001172674|ZNF347|84671|zinc finger protein 347	NM_001172675|ZNF347|84671|zinc finger protein 347	NM_032584|ZNF347|84671|zinc finger protein 347
hg19_v1_chr12_+_50156977_50157080	0.00541934	LHX3,4.p2	AK026605|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6
hg19_v1_chr8_+_144731829_144732042	0.00534558	LHX3,4.p2	AB014528|ZNF623|9831|zinc finger protein 623	BC067516|ZNF623|9831|zinc finger protein 623	BC067517|ZNF623|9831|zinc finger protein 623	BC067518|ZNF623|9831|zinc finger protein 623	NM_014789|ZNF623|9831|zinc finger protein 623	BC075056|ZNF623|9831|zinc finger protein 623	BC075057|ZNF623|9831|zinc finger protein 623	EU446754|ZNF623|9831|zinc finger protein 623
hg19_v1_chr10_+_6130936_6130963	0.00516071	LHX3,4.p2	NM_032905|RBM17|84991|RNA binding motif protein 17
hg19_v1_chr12_-_71148383_71148538	0.00510867	LHX3,4.p2	BC092469|PTPRR|5801|protein tyrosine phosphatase, receptor type, R	NM_130846|PTPRR|5801|protein tyrosine phosphatase, receptor type, R	U77916|PTPRR|5801|protein tyrosine phosphatase, receptor type, R	BX571751|PTPRR|5801|protein tyrosine phosphatase, receptor type, R	AK304457|PTPRR|5801|protein tyrosine phosphatase, receptor type, R	AK304672|PTPRR|5801|protein tyrosine phosphatase, receptor type, R	NM_001207016|PTPRR|5801|protein tyrosine phosphatase, receptor type, R
hg19_v1_chr19_+_48949029_48949106	0.00510429	LHX3,4.p2	NM_031485|GRWD1|83743|glutamate-rich WD repeat containing 1	AK074676|GRWD1|83743|glutamate-rich WD repeat containing 1	AK300225|GRWD1|83743|glutamate-rich WD repeat containing 1
hg19_v1_chr2_-_200329810_200329830	0.00503088	LHX3,4.p2	AB209376|SATB2|23314|SATB homeobox 2	NM_001172517|SATB2|23314|SATB homeobox 2
hg19_v1_chr6_+_158438079_158438266	0.0050235	LHX3,4.p2	NM_001178088|SYNJ2|8871|synaptojanin 2	BX648749|SYNJ2|8871|synaptojanin 2	AB002346|SYNJ2|8871|synaptojanin 2	AF039945|SYNJ2|8871|synaptojanin 2
hg19_v1_chr14_+_71996041_71996041	0.00501449	LHX3,4.p2	AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1	AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1	NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1
hg19_v1_chr20_+_37101457_37101559	0.00498224	LHX3,4.p2	AB033045|RALGAPB|57148|Ral GTPase activating protein, beta subunit (non-catalytic)	BC047482|RALGAPB|57148|Ral GTPase activating protein, beta subunit (non-catalytic)	NM_020336|RALGAPB|57148|Ral GTPase activating protein, beta subunit (non-catalytic)	AK304242|RALGAPB|57148|Ral GTPase activating protein, beta subunit (non-catalytic)	CR936800|RALGAPB|57148|Ral GTPase activating protein, beta subunit (non-catalytic)
hg19_v1_chr6_+_101846668_101846686	0.00495413	LHX3,4.p2	BC037954|GRIK2|2898|glutamate receptor, ionotropic, kainate 2
hg19_v1_chr1_-_51887740_51887792	0.0049047	LHX3,4.p2	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15	AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15	BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15	NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15
hg19_v1_chr17_+_78356710_78356831	0.00481999	LHX3,4.p2	AK023871|RNF213|57674|ring finger protein 213
hg19_v1_chr7_+_90338711_90338855	0.00475005	LHX3,4.p2	AB020641|CDK14|5218|cyclin-dependent kinase 14	BC152436|CDK14|5218|cyclin-dependent kinase 14	BC167152|CDK14|5218|cyclin-dependent kinase 14	BC167156|CDK14|5218|cyclin-dependent kinase 14	NM_012395|CDK14|5218|cyclin-dependent kinase 14	BC136477|CDK14|5218|cyclin-dependent kinase 14	AK289782|CDK14|5218|cyclin-dependent kinase 14	BC152388|CDK14|5218|cyclin-dependent kinase 14
hg19_v1_chr3_-_165555167_165555220	0.00467563	LHX3,4.p2	M16474|BCHE|590|butyrylcholinesterase	BC018141|BCHE|590|butyrylcholinesterase	BC008396|BCHE|590|butyrylcholinesterase	AK292063|BCHE|590|butyrylcholinesterase	M16541|BCHE|590|butyrylcholinesterase
hg19_v1_chr11_+_87032428_87032456	0.00442378	LHX3,4.p2	AK024853|TMEM135|65084|transmembrane protein 135
hg19_v1_chr15_-_49103183_49103342	0.00433915	LHX3,4.p2	BC117182|CEP152|22995|centrosomal protein 152kDa	AB020719|CEP152|22995|centrosomal protein 152kDa	BC069186|CEP152|22995|centrosomal protein 152kDa	AK303805|CEP152|22995|centrosomal protein 152kDa	BX648822|CEP152|22995|centrosomal protein 152kDa	BC107721|CEP152|22995|centrosomal protein 152kDa	NM_001194998|CEP152|22995|centrosomal protein 152kDa	NM_014985|CEP152|22995|centrosomal protein 152kDa
hg19_v1_chr20_-_33734894_33734933	0.00421833	LHX3,4.p2	AK096016|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2	AK298794|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2
hg19_v1_chrX_-_110655384_110655459	0.00418501	LHX3,4.p2	AF040254|DCX|1641|doublecortin	AF040255|DCX|1641|doublecortin	BC027925|DCX|1641|doublecortin	AK290455|DCX|1641|doublecortin	AK299822|DCX|1641|doublecortin	NM_178151|DCX|1641|doublecortin	NM_001195553|DCX|1641|doublecortin	NM_178152|DCX|1641|doublecortin	NM_178153|DCX|1641|doublecortin
hg19_v1_chr4_+_187148624_187148712	0.0041368	LHX3,4.p2	AK292624|KLKB1|3818|kallikrein B, plasma (Fletcher factor) 1	AK297672|KLKB1|3818|kallikrein B, plasma (Fletcher factor) 1	M13143|KLKB1|3818|kallikrein B, plasma (Fletcher factor) 1	NM_000892|KLKB1|3818|kallikrein B, plasma (Fletcher factor) 1	AK313378|KLKB1|3818|kallikrein B, plasma (Fletcher factor) 1	BC117349|KLKB1|3818|kallikrein B, plasma (Fletcher factor) 1	BC117351|KLKB1|3818|kallikrein B, plasma (Fletcher factor) 1	BC143911|KLKB1|3818|kallikrein B, plasma (Fletcher factor) 1
hg19_v1_chr8_+_123794043_123794164	0.00413522	LHX3,4.p2	AB020661|ZHX2|22882|zinc fingers and homeoboxes 2
hg19_v1_chr12_-_21927614_21927746	0.00412832	LHX3,4.p2	BC000544|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8	AK291821|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8	D50312|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8	NM_004982|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v1_chr3_-_15563160_15563276	0.00412593	LHX3,4.p2	BC126363|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	BC144004|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	BC074828|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	BC074829|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AY150334|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AY150335|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AY150336|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AY150337|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AY150338|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AY150339|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AJ225895|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AF057036|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	NM_005677|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	NM_080539|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AK289688|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
hg19_v1_chr17_-_10372875_10372875	0.00402712	LHX3,4.p2	AF111783|MYH4|4622|myosin, heavy chain 4, skeletal muscle	NM_017533|MYH4|4622|myosin, heavy chain 4, skeletal muscle
hg19_v1_chr11_+_22696318_22696354	0.00400025	LHX3,4.p2	NM_005256|GAS2|2620|growth arrest-specific 2	U95032|GAS2|2620|growth arrest-specific 2
hg19_v1_chr1_-_89357181_89357242	0.00396912	LHX3,4.p2	AB451296|GTF2B|2959|general transcription factor IIB	EU446894|GTF2B|2959|general transcription factor IIB	M76766|GTF2B|2959|general transcription factor IIB
hg19_v1_chr20_+_2083418_2083613	0.00396577	LHX3,4.p2	BC140883|STK35|140901|serine/threonine kinase 35	BC140884|STK35|140901|serine/threonine kinase 35	AF195026|STK35|140901|serine/threonine kinase 35	BC111573|STK35|140901|serine/threonine kinase 35	BC017340|STK35|140901|serine/threonine kinase 35	AK302629|STK35|140901|serine/threonine kinase 35
hg19_v1_chr7_-_14029641_14029641	0.00369652	LHX3,4.p2	NM_001163147|ETV1|2115|ets variant 1	NM_004956|ETV1|2115|ets variant 1
hg19_v1_chr6_+_34857021_34857179	0.00360183	LHX3,4.p2	BC022396|ANKS1A|23294|ankyrin repeat and sterile alpha motif domain containing 1A	NM_015245|ANKS1A|23294|ankyrin repeat and sterile alpha motif domain containing 1A	D86982|ANKS1A|23294|ankyrin repeat and sterile alpha motif domain containing 1A	BC031934|ANKS1A|23294|ankyrin repeat and sterile alpha motif domain containing 1A	AK298987|ANKS1A|23294|ankyrin repeat and sterile alpha motif domain containing 1A	BC132832|ANKS1A|23294|ankyrin repeat and sterile alpha motif domain containing 1A	BC144341|ANKS1A|23294|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v1_chr14_+_94492683_94492723	0.00353235	LHX3,4.p2	BC009615|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2	BC068058|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2	NM_023112|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2
hg19_v1_chr19_-_56704420_56704420	0.0034978	LHX3,4.p2	NM_001080456|ZSCAN5B|342933|zinc finger and SCAN domain containing 5B
hg19_v1_chr2_+_183943286_183943286	0.00349053	LHX3,4.p2	AB063186|DUSP19|142679|dual specificity phosphatase 19	AB063187|DUSP19|142679|dual specificity phosphatase 19	NM_001142314|DUSP19|142679|dual specificity phosphatase 19	NM_080876|DUSP19|142679|dual specificity phosphatase 19
hg19_v1_chrX_+_123234462_123234598	0.00346383	LHX3,4.p2	AK026678|STAG2|10735|stromal antigen 2
hg19_v1_chr8_+_123963649_123963750	0.00342575	LHX3,4.p2	EU446694|ZHX2|22882|zinc fingers and homeoboxes 2	AB083653|ZHX2|22882|zinc fingers and homeoboxes 2
hg19_v1_chr7_-_112727832_112727848	0.00322396	LHX3,4.p2	NM_001146265|GPR85|54329|G protein-coupled receptor 85	NM_018970|GPR85|54329|G protein-coupled receptor 85
hg19_v1_chr3_+_142342265_142342343	0.00321875	LHX3,4.p2	NM_002670|PLS1|5357|plastin 1	L20826|PLS1|5357|plastin 1
hg19_v1_chr1_+_229440128_229440128	0.00316315	LHX3,4.p2	BC107681|SPHAR|10638|S-phase response (cyclin related)	NM_006542|SPHAR|10638|S-phase response (cyclin related)
hg19_v1_chr8_-_37727937_37727964	0.00311913	LHX3,4.p2	AK026177|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)
hg19_v1_chr11_-_126870685_126870765	0.00310991	LHX3,4.p2	AY358743|KIRREL3|84623|kin of IRRE like 3 (Drosophila)	NM_001161707|KIRREL3|84623|kin of IRRE like 3 (Drosophila)	NM_032531|KIRREL3|84623|kin of IRRE like 3 (Drosophila)
hg19_v1_chr17_-_16256824_16256843	0.00308374	LHX3,4.p2	BC137486|CENPV|201161|centromere protein V	BC137487|CENPV|201161|centromere protein V
hg19_v1_chr8_-_18666295_18666404	0.0030731	LHX3,4.p2	BC045112|PSD3|23362|pleckstrin and Sec7 domain containing 3	AB023159|PSD3|23362|pleckstrin and Sec7 domain containing 3	NM_206909|PSD3|23362|pleckstrin and Sec7 domain containing 3
hg19_v1_chr7_-_37488554_37488556	0.00306513	LHX3,4.p2	NM_014800|ELMO1|9844|engulfment and cell motility 1
hg19_v1_chr6_-_169654047_169654181	0.00301711	LHX3,4.p2	L12350|THBS2|7058|thrombospondin 2	NM_003247|THBS2|7058|thrombospondin 2	AK292429|THBS2|7058|thrombospondin 2
hg19_v1_chr15_-_99789585_99789827	0.00301392	LHX3,4.p2	BC015728|TTC23|64927|tetratricopeptide repeat domain 23	AF411456|TTC23|64927|tetratricopeptide repeat domain 23	NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23	NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23	NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23	NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23	NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23	NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23	NM_022905|TTC23|64927|tetratricopeptide repeat domain 23
hg19_v1_chr17_-_16256708_16256817	0.00300853	LHX3,4.p2	AF514992|CENPV|201161|centromere protein V	NM_181716|CENPV|201161|centromere protein V	BC052604|CENPV|201161|centromere protein V
hg19_v1_chr1_+_61869699_61869747	0.00293516	LHX3,4.p2	AK024964|NFIA|4774|nuclear factor I/A
hg19_v1_chr15_+_67418053_67418193	0.00291768	LHX3,4.p2	NM_001145102|SMAD3|4088|SMAD family member 3	AK316017|SMAD3|4088|SMAD family member 3
hg19_v1_chr9_-_32526164_32526340	0.00277475	LHX3,4.p2	AK301678|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK315040|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BX647917|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC070029|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC132786|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC136610|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AF038963|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	NM_014314|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC107731|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
hg19_v1_chr20_-_39928708_39928738	0.00269107	LHX3,4.p2	AK122905|ZHX3|23051|zinc fingers and homeoboxes 3	AK097523|ZHX3|23051|zinc fingers and homeoboxes 3	AB081948|ZHX3|23051|zinc fingers and homeoboxes 3	BC047070|ZHX3|23051|zinc fingers and homeoboxes 3	AK292415|ZHX3|23051|zinc fingers and homeoboxes 3	NM_015035|ZHX3|23051|zinc fingers and homeoboxes 3
hg19_v1_chr3_-_48130633_48130768	0.00260712	LHX3,4.p2	AK054577|MAP4|4134|microtubule-associated protein 4	NM_001134364|MAP4|4134|microtubule-associated protein 4	NM_002375|MAP4|4134|microtubule-associated protein 4	NM_030885|MAP4|4134|microtubule-associated protein 4
hg19_v1_chr1_+_198608136_198608210	0.00255167	LHX3,4.p2	NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C
hg19_v1_chr3_-_33700932_33701071	0.00248484	LHX3,4.p2	NM_001207044|CLASP2|23122|cytoplasmic linker associated protein 2
hg19_v1_chr3_-_11623829_11623837	0.00246698	LHX3,4.p2	AK307708|VGLL4|9686|vestigial like 4 (Drosophila)	NM_001128220|VGLL4|9686|vestigial like 4 (Drosophila)
hg19_v1_chr3_+_50273575_50273632	0.0024517	LHX3,4.p2	BC012138|GNAI2|2771|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
hg19_v1_chr8_-_101936521_101936527	0.00240921	LHX3,4.p2	DQ185048|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
hg19_v1_chrM_+_5513_5584	0.00236276	LHX3,4.p2	
hg19_v1_chr4_+_123161119_123161129	0.00234854	LHX3,4.p2	CR936613|KIAA1109|84162|KIAA1109
hg19_v1_chr2_+_172821874_172822000	0.0022841	LHX3,4.p2	BC018682|HAT1|8520|histone acetyltransferase 1
hg19_v1_chr16_+_20817766_20817867	0.00207918	LHX3,4.p2	NM_001144924|LOC81691|81691|exonuclease NEF-sp	NM_001199053|LOC81691|81691|exonuclease NEF-sp	NM_030941|LOC81691|81691|exonuclease NEF-sp	BC007646|LOC81691|81691|exonuclease NEF-sp	AF332193|LOC81691|81691|exonuclease NEF-sp	AL136763|LOC81691|81691|exonuclease NEF-sp
hg19_v1_chr5_-_141993691_141993725	0.0020565	LHX3,4.p2	S67291|FGF1|2246|fibroblast growth factor 1 (acidic)	S67292|FGF1|2246|fibroblast growth factor 1 (acidic)	S67294|FGF1|2246|fibroblast growth factor 1 (acidic)	X65778|FGF1|2246|fibroblast growth factor 1 (acidic)	X65779|FGF1|2246|fibroblast growth factor 1 (acidic)	M13361|FGF1|2246|fibroblast growth factor 1 (acidic)	NM_033137|FGF1|2246|fibroblast growth factor 1 (acidic)	X51943|FGF1|2246|fibroblast growth factor 1 (acidic)
hg19_v1_chr15_+_52201590_52201630	0.00203619	LHX3,4.p2	AK025704|TMOD3|29766|tropomodulin 3 (ubiquitous)
hg19_v1_chr21_+_30400229_30400257	0.00200202	LHX3,4.p2	DQ892395|USP16|10600|ubiquitin specific peptidase 16	DQ895610|USP16|10600|ubiquitin specific peptidase 16
hg19_v1_chr7_-_104909442_104909525	0.00196482	LHX3,4.p2	BC035214|SRPK2|6733|SRSF protein kinase 2	U88666|SRPK2|6733|SRSF protein kinase 2	NM_182691|SRPK2|6733|SRSF protein kinase 2
hg19_v1_chr7_-_104567089_104567092	0.00148629	LHX3,4.p2	BC050337|LOC723809|723809|uncharacterized LOC723809
hg19_v1_chr1_-_21437875_21437875	0.00135547	LHX3,4.p2	AF012072|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3	NM_003760|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3
hg19_v1_chr7_+_129015483_129015483	0.00112701	LHX3,4.p2	AK316073|AHCYL2|23382|adenosylhomocysteinase-like 2	NM_001130722|AHCYL2|23382|adenosylhomocysteinase-like 2
hg19_v1_chr2_+_161993465_161993465	0.0010558	LHX3,4.p2	NM_004180|TANK|10010|TRAF family member-associated NFKB activator	NM_133484|TANK|10010|TRAF family member-associated NFKB activator	U59863|TANK|10010|TRAF family member-associated NFKB activator	U63830|TANK|10010|TRAF family member-associated NFKB activator
hg19_v1_chr20_+_42136313_42136375	0.000955772	LHX3,4.p2	NM_032107|L3MBTL1|26013|l(3)mbt-like 1 (Drosophila)	AK299199|L3MBTL1|26013|l(3)mbt-like 1 (Drosophila)
hg19_v1_chr1_-_161337663_161337663	0.000930942	LHX3,4.p2	NM_001013625|C1orf192|257177|chromosome 1 open reading frame 192
hg19_v1_chr17_-_10325266_10325266	0.000824165	LHX3,4.p2	AK303395|MYH8|4626|myosin, heavy chain 8, skeletal muscle, perinatal	NM_002472|MYH8|4626|myosin, heavy chain 8, skeletal muscle, perinatal
hg19_v1_chr2_+_187454724_187454936	0.000714131	LHX3,4.p2	AK302550|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	AK309711|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	NM_001145000|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	NM_002210|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	AB209894|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	BC126231|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	BC136442|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	BC144100|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)
hg19_v1_chr5_+_67588395_67588510	0.000681504	LHX3,4.p2	AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v1_chr18_-_51750934_51750997	0.000579783	LHX3,4.p2	BC032638|MBD2|8932|methyl-CpG binding domain protein 2
hg19_v1_chr12_+_105153258_105153296	0.000545521	LHX3,4.p2	AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11
hg19_v1_chr22_+_18043147_18043291	0.000393215	LHX3,4.p2	AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18	AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18	NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18	BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18	AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18	AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18	AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18
hg19_v1_chr7_+_23286420_23286476	0.000372747	LHX3,4.p2	AF322909|GPNMB|10457|glycoprotein (transmembrane) nmb	BC025297|GPNMB|10457|glycoprotein (transmembrane) nmb	BC011595|GPNMB|10457|glycoprotein (transmembrane) nmb	DQ892084|GPNMB|10457|glycoprotein (transmembrane) nmb	DQ895277|GPNMB|10457|glycoprotein (transmembrane) nmb	BT007074|GPNMB|10457|glycoprotein (transmembrane) nmb
hg19_v1_chr14_+_58906398_58906455	0.00034621	LHX3,4.p2	AK302579|KIAA0586|9786|KIAA0586	NM_001244193|KIAA0586|9786|KIAA0586	AK310356|KIAA0586|9786|KIAA0586	AK302718|KIAA0586|9786|KIAA0586
hg19_v1_chr1_-_114414245_114414374	0.000343313	LHX3,4.p2	JN084012|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	AF001846|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	GU479452|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	AF150732|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	AF077031|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	BC071670|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	AK303124|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	AK310570|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	AK310698|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	BC017785|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	NM_001193431|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	NM_012411|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	NM_015967|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
hg19_v1_chr11_+_126173954_126173984	0.000276796	LHX3,4.p2	AK307403|DCPS|28960|decapping enzyme, scavenger	BC014532|DCPS|28960|decapping enzyme, scavenger	AF077201|DCPS|28960|decapping enzyme, scavenger	AY077684|DCPS|28960|decapping enzyme, scavenger
hg19_v1_chr1_-_231560789_231560789	0.000226862	LHX3,4.p2	AF229245|EGLN1|54583|egl nine homolog 1 (C. elegans)	NM_022051|EGLN1|54583|egl nine homolog 1 (C. elegans)
hg19_v1_chr5_-_10761179_10761340	0.000200585	LHX3,4.p2	CR542184|DAP|1611|death-associated protein	AK311783|DAP|1611|death-associated protein	X76105|DAP|1611|death-associated protein	AK298670|DAP|1611|death-associated protein
hg19_v1_chr7_-_112727799_112727815	0.000184744	LHX3,4.p2	AK309392|GPR85|54329|G protein-coupled receptor 85	AF250237|GPR85|54329|G protein-coupled receptor 85	AK302769|GPR85|54329|G protein-coupled receptor 85
hg19_v1_chr4_-_99851785_99851787	0.000117589	LHX3,4.p2	NM_001130679|EIF4E|1977|eukaryotic translation initiation factor 4E	NM_001968|EIF4E|1977|eukaryotic translation initiation factor 4E	BC035166|EIF4E|1977|eukaryotic translation initiation factor 4E
hg19_v1_chr12_+_93130264_93130310	0.000112669	LHX3,4.p2	NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7	AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7
hg19_v1_chr2_+_185463235_185463252	0.000108901	LHX3,4.p2	BC150198|ZNF804A|91752|zinc finger protein 804A	AK131402|ZNF804A|91752|zinc finger protein 804A
hg19_v1_chr5_-_94224601_94224612	0.000101797	LHX3,4.p2	AK025997|MCTP1|79772|multiple C2 domains, transmembrane 1
hg19_v1_chr14_+_103851693_103851713	1.20869e-05	LHX3,4.p2	NM_001128918|MARK3|4140|MAP/microtubule affinity-regulating kinase 3	NM_001128919|MARK3|4140|MAP/microtubule affinity-regulating kinase 3	NM_001128920|MARK3|4140|MAP/microtubule affinity-regulating kinase 3	NM_001128921|MARK3|4140|MAP/microtubule affinity-regulating kinase 3	NM_002376|MARK3|4140|MAP/microtubule affinity-regulating kinase 3
