Interactive Gene Viewer: Myotis daubentonii RNA-Seq

Martin Hölzer, Andreas Schoen, Julia Wulle, Marcel Müller, Christian Drosten, Manja Marz, and Friedemann Weber

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Please cite:
Hölzer, M., Schoen, A., Wulle, J., Müller, M.A., Drosten, C., Marz, M., Weber, F., "Virus- and interferon alpha-induced transcriptomes of cells from the microbat Myotis daubentonii", iScience 19, 647-661 (2019)
https://doi.org/10.1016/j.isci.2019.08.016

The table shows for the four comparisons

• Mock:IFN 6h
• Mock:IFN 24h
• Mock:Clone13_6h
• Mock:Clone13 24h

all genes that have a significant hit (adjusted p-value/q-value < 0.05) with a fold change > 1 in at least one of the comparisons.

For each pairwise comparison, the table shows the fold change (mouseover for the exact number) and if the hit is significant (q-value, again mouseover for exact number). The table can be easily searched by the gene name and Ensembl gene id. The last column shows a link to the expression boxplot.

Additionally annotated gene names marked by a * did not match our filter criteria, however were assigned due to manual investigation of the sequences and alignments.

Update: our results are based on an extended (see manuscript) Ensembl annotation of M. lucifugus (MyoLuc2.0, v85). Here, we updated the following gene name based on the Ensembl release 95, because it was not named in the v86:

• ENSMLUG00000012714 JUNB

Legend

Log2 Fold change (FC):	-1.0 <= FC <= 1.0	-2.0 <= FC < -1.0	FC < -2.0	1.0 < FC <= 2.0	FC > 2.0
Adjusted p-value (q-value):	Not available	Significant (q-value < 0.05)	Not significant (q-value >= 0.05)