Results of CodeML analyses for fragment 3

CodeML parameter and result files

	M0	M1a	M2a	M7	M8	M8a
F3X4	results | params	results | params	results | params	results | params	results | params	results | params
F1X4	results | params	results | params	results | params	results | params	results | params	results | params
F61	results | params	results | params	results | params	results | params	results | params	results | params

Likelihood ratio tests between nested models

Green = LRT was significant at significance level 0.1

Red = LRT was not significant.

	M1a-M2a	M7-M8	M8a-M8
F61	lnL_M1a = -7165.31 lnL_M2a = -7134.73 LRT: χ2 = 61.16 % sites with ω > 1 = 6.22 avg(ω) = 3.48 p < 0.001	lnL_M7 = -7173.46 lnL_M8 = -7132.22 LRT: χ2 = 82.48 % sites with ω > 1 = 8.1 avg(ω) = 3.0 p < 0.001	lnL_M8a = -7163.89 lnL_M8 = -7132.22 LRT: χ2 = 63.34 % sites with ω > 1 = 8.1 avg(ω) = 3.0 p < 0.001
F1X4	lnL_M1a = -7153.14 lnL_M2a = -7122.7 LRT: χ2 = 60.87 % sites with ω > 1 = 5.51 avg(ω) = 3.66 p < 0.001	lnL_M7 = -7161.97 lnL_M8 = -7119.53 LRT: χ2 = 84.88 % sites with ω > 1 = 7.76 avg(ω) = 3.02 p < 0.001	lnL_M8a = -7150.69 lnL_M8 = -7119.53 LRT: χ2 = 62.32 % sites with ω > 1 = 7.76 avg(ω) = 3.02 p < 0.001
F3X4	lnL_M1a = -7088.19 lnL_M2a = -7046.64 LRT: χ2 = 83.12 % sites with ω > 1 = 5.37 avg(ω) = 4.6 p < 0.001	lnL_M7 = -7098.2 lnL_M8 = -7041.86 LRT: χ2 = 112.69 % sites with ω > 1 = 6.59 avg(ω) = 3.83 p < 0.001	lnL_M8a = -7082.67 lnL_M8 = -7041.86 LRT: χ2 = 81.62 % sites with ω > 1 = 6.59 avg(ω) = 3.83 p < 0.001