Basic Statistics
Measure | Value |
---|---|
Filename | 74_GATCAG_L005_R1_001_prinseq_good_1F1j.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20337189 |
Sequences flagged as poor quality | 0 |
Sequence length | 15-50 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 1961452 | 9.644656397695867 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 1081457 | 5.317632638414286 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 1015085 | 4.991274851209771 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 1011118 | 4.971768713955503 | No Hit |
TCACAGTGAACCGGTCTCTTT | 576431 | 2.834369095945364 | No Hit |
AACATTCAACGCTGTCGGTGA | 460780 | 2.2657015185333624 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 282095 | 1.3870894350246732 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 222920 | 1.0961200193399392 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 215481 | 1.059541709525343 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 212841 | 1.0465605644909923 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 209382 | 1.0295523142357579 | No Hit |
AACCCGTAGATCCGAACTTGTG | 208618 | 1.025795649536423 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 201844 | 0.9924872114823735 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 192005 | 0.9441078607274586 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 190020 | 0.9343474164497365 | No Hit |
AACATTCATTGCTGTCGGTGGG | 187845 | 0.9236527230975726 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 184064 | 0.9050611665161788 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 178338 | 0.876905849672735 | No Hit |
TCCCTGAGACCCTTAACCTGT | 175548 | 0.8631871395796145 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 165622 | 0.8143800010906128 | No Hit |
TTCACAGTGGCTAAGTTCTG | 156842 | 0.7712078596506134 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 156170 | 0.7679035681873242 | No Hit |
TCACAGTGAACCGGTCTCTT | 144514 | 0.7105898460205096 | No Hit |
TCCAGCATCAGTGATTTTGTT | 141495 | 0.6957451199376669 | No Hit |
TTGCATAGTCACAAAAGTGATC | 138525 | 0.6811413317740225 | No Hit |
TACCCTGTAGAACCGAATGTGT | 125925 | 0.6191858668373491 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 118904 | 0.5846629049865248 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 112711 | 0.5542113022601108 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 108779 | 0.5348772635195552 | No Hit |
TAACAGTCTACAGTCATGGCT | 106713 | 0.5247185341100975 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 106027 | 0.5213454032413232 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 104561 | 0.514136934066945 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 102088 | 0.5019769447980249 | No Hit |
AAGCTGCCAGCTGAAGAACT | 97699 | 0.480395791178417 | No Hit |
TACCCTGTAGAACCGAATTTGT | 97382 | 0.4788370703542166 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 97026 | 0.47708658261473597 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 95777 | 0.4709451242253785 | No Hit |
TAAAGGGAATTTGCGACTGTT | 94390 | 0.4641251059819526 | No Hit |
TACCCTGTAGATCCGGATTTGT | 87828 | 0.43185909321096444 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 85244 | 0.4191533057985546 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 78539 | 0.3861841476715391 | No Hit |
AACCCGTAGATCCGAACTTGT | 72895 | 0.3584320330602228 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 70127 | 0.34482149917572186 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 69630 | 0.3423777002809975 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 68302 | 0.33584779096068784 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 67533 | 0.332066540759394 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 65728 | 0.323191174552196 | No Hit |
AACATTCAACGCTGTCGGTGG | 62474 | 0.30719092987728047 | No Hit |
TGCTCAGTAGTCAGTGTAGATC | 61917 | 0.3044521049590482 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 59818 | 0.2941311112366611 | No Hit |
TAAAGCTAGAGAACCGAAAGTAA | 59196 | 0.29107267479296184 | No Hit |
TTCAAGTAATCCAGGATAGGC | 58230 | 0.28632275581448347 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 58135 | 0.28585563127726255 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 56436 | 0.2775014777115952 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 55812 | 0.2744332070671124 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 54374 | 0.26736241670370475 | No Hit |
CCTGTCTGAGGGTCGCT | 52973 | 0.26047355905479364 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 52944 | 0.26033096314343146 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 52397 | 0.25764130922911715 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 49816 | 0.24495027311788273 | No Hit |
TAAAGCTAGAGAACCGAAAGTAT | 49123 | 0.2415427225463657 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 48647 | 0.23920218275986913 | No Hit |
AACCCGTAGATCCGAACTTGTGA | 46159 | 0.22696843698507205 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 46082 | 0.22658982025490346 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 45121 | 0.2218644867783842 | No Hit |
TAAGGCACGCGGTGAATGCC | 43777 | 0.21525590385180568 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 42684 | 0.20988151312356884 | No Hit |
TGAGATGAAGCACTGTAGCT | 42106 | 0.20703942909710876 | No Hit |
TACCCTGTAGAACCGAATTTGC | 42067 | 0.20684766218182857 | No Hit |
CCTTGGCTTTAGACTGCTTACT | 41346 | 0.20330243279934115 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 41102 | 0.20210266030374208 | No Hit |
CATTATTACTTTTGGTACGCG | 40917 | 0.20119299673125915 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 39779 | 0.19559733648539138 | No Hit |
ACCATCGACCGTTGACTGTGCC | 39741 | 0.19541048667050298 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 39089 | 0.19220453721504974 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 37312 | 0.18346684981882205 | No Hit |
TGAGATGAAGCACTGTAGCTC | 37242 | 0.1831226527913961 | No Hit |
TCCCTGAGACCCTAACTTGT | 36962 | 0.18174586468169224 | No Hit |
AACATTCAACGCTGTCGGTG | 36694 | 0.18042808177668998 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 36098 | 0.17749748994317752 | No Hit |
TTTGGCAATGGTAGAACTCACA | 35965 | 0.17684351559106815 | No Hit |
TAACGGAACCCATAATGCAGCTG | 35547 | 0.174788167627296 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 33147 | 0.16298712668697724 | No Hit |
ACCATCGACCGTTGACTGTACC | 32595 | 0.16027288727070393 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 32578 | 0.16018929656404335 | No Hit |
CTGGACAACTCTTAGCGG | 32394 | 0.15928455009195222 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 31994 | 0.15731770993523245 | No Hit |
TGAGGTAGTAGTTTGTGCTGTTT | 31693 | 0.1558376627173008 | No Hit |
TCCCTGAGACCCTAACTTGTG | 31244 | 0.15362988464138283 | No Hit |
GTACAGTACTGTGATAACTGA | 30691 | 0.15091072812471773 | No Hit |
TACAGTACTGTGATAACTGAAG | 30635 | 0.15063537050277698 | No Hit |
TCACAGTGAACCGGTCTCT | 29643 | 0.14575760691411188 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 29291 | 0.14402678757619847 | No Hit |
TGAGGTAGTAGTTTGTATAGT | 28856 | 0.1418878489057657 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 28624 | 0.1407470816148682 | No Hit |
TTCACAGTGGTTAAGTTCTG | 28603 | 0.14064382250664043 | No Hit |
ACTGGACAACTCTTAGCGG | 28109 | 0.13821477491309148 | No Hit |
TAACAGTCTACAGCCATGGTC | 28008 | 0.13771814777351973 | No Hit |
TAGCAGCACGTAAATATTGGAG | 27996 | 0.13765914256881814 | No Hit |
TACCCTGTAGATCCGGATTTGTG | 27852 | 0.136951080112399 | No Hit |
AACATTCAACGCTGTCGGTGT | 27773 | 0.13656262918144688 | No Hit |
TTGCATAGTCACAAAAATGAGC | 27528 | 0.13535793958545597 | No Hit |
TAACAGTCTACAGCCATGGTCG | 26656 | 0.13107022804380683 | No Hit |
ACCATCGACCGTTGACTGTGCCT | 25435 | 0.12506644846541967 | No Hit |
CATTGCACTTGTCTCGGTCTGA | 24710 | 0.12150155068136506 | No Hit |
TGAGGTAGTAGGTTGTGTGGTTT | 24533 | 0.12063122391201654 | No Hit |
TATTGCACTCGTCCCGGCCTC | 24499 | 0.12046404249869537 | No Hit |
TGAGGTAGTTGTTTGTACAGTT | 23803 | 0.11704174062600294 | No Hit |
TCTTTGGTTATCTAGCTGTA | 23602 | 0.11605340344725125 | No Hit |
TAAATCTAGAGAACCGAAAGTA | 23471 | 0.11540926329592552 | No Hit |
TGATGTAGTAGGTTGTATAGTT | 23180 | 0.11397838708191185 | No Hit |
TACGACCTCAGATCAGACGAGA | 22662 | 0.11143132907895972 | No Hit |
TATGGCTTTTTATTCCTATCTG | 22417 | 0.11022663948296886 | No Hit |
TTCACAGTGGCTAAGTTCTGCT | 22149 | 0.10890885657796659 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 22004 | 0.10819587702115567 | No Hit |
TCCCTGAGACCCTTAACCTGTGT | 21744 | 0.1069174309192878 | No Hit |
AACAGTCAACGCTGTCGGTGAG | 21722 | 0.10680925471066822 | No Hit |
TAGCAGCACGGAATGGTTTGT | 21296 | 0.10471456994376166 | No Hit |
TATTGCACTCGTCCCGGCCT | 21111 | 0.10380490637127875 | No Hit |
TGAGGTAGTTGGTTGTATAGT | 20512 | 0.10085956323659084 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCACGA | 5 | 2.5900346E-4 | 5621.2437 | 44 |
CGTATAC | 95 | 0.0 | 2958.5493 | 44 |
TTGCGGA | 145 | 0.0 | 2907.5398 | 44 |
AGTCACC | 25 | 8.094503E-10 | 2871.4575 | 43 |
GTTACAG | 75 | 0.0 | 2770.0735 | 41 |
AGTTTAC | 20 | 1.031367E-9 | 2703.6958 | 40 |
ACGCAGC | 95 | 0.0 | 2518.8225 | 43 |
CACTCAC | 45 | 1.8189894E-12 | 2498.3303 | 44 |
ACAAATT | 80 | 0.0 | 2459.294 | 44 |
ACCCTCC | 70 | 0.0 | 2409.104 | 44 |
GCTTGCG | 330 | 0.0 | 2320.3699 | 43 |
GCCGTAA | 5 | 0.0015573337 | 2292.799 | 36 |
TCCAGTC | 995 | 0.0 | 2288.0437 | 44 |
CCAGTCA | 545 | 0.0 | 2217.5547 | 44 |
GAACCCC | 120 | 0.0 | 2193.4746 | 43 |
TCCAATC | 35 | 3.6379788E-12 | 2158.4988 | 41 |
CCGCTAC | 5 | 0.0018604139 | 2097.7441 | 35 |
CAGTCAC | 320 | 0.0 | 2020.1344 | 44 |
CATTATG | 5 | 0.0020621158 | 1992.5104 | 34 |
CAAAGAA | 3315 | 0.0 | 1947.9707 | 39 |