Basic Statistics
Measure | Value |
---|---|
Filename | B1_TTAGGC_L004_R1_001_prinseq_good_RTwd.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17780025 |
Sequences flagged as poor quality | 0 |
Sequence length | 15-50 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 1979554 | 11.13358389541072 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 1114161 | 6.266363517486617 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 917777 | 5.161843135766119 | No Hit |
TCACAGTGAACCGGTCTCTTT | 594616 | 3.344292260556439 | No Hit |
AACATTCAACGCTGTCGGTGA | 522949 | 2.941216336872417 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 463543 | 2.6070998212882155 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 336091 | 1.8902729326871026 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 260759 | 1.4665839896175623 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 217652 | 1.2241377613361062 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 202895 | 1.1411401277557258 | No Hit |
AACATTCATTGCTGTCGGTGGG | 191619 | 1.077720644374797 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 185438 | 1.042956913727624 | No Hit |
TTCACAGTGGCTAAGTTCTG | 182627 | 1.0271470371948297 | No Hit |
TCACAGTGAACCGGTCTCTT | 156993 | 0.8829740115663504 | No Hit |
TCCAGCATCAGTGATTTTGTT | 135163 | 0.7601957815019945 | No Hit |
AAGCTGCCAGCTGAAGAACT | 130165 | 0.7320855848065456 | No Hit |
TAACAGTCTACAGTCATGGCT | 129069 | 0.7259213640025816 | No Hit |
TAAAGGGAATTTGCGACTGTT | 124159 | 0.6983061047439472 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 121335 | 0.6824231124534414 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 119311 | 0.671039551406705 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 116819 | 0.6570238230823635 | No Hit |
TTGCATAGTCACAAAAGTGATC | 115065 | 0.6471588200803992 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 110695 | 0.6225806769113092 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 108139 | 0.6082049940874661 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 105856 | 0.5953647421755593 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 101977 | 0.5735481249323328 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 101634 | 0.5716189937865667 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 92943 | 0.5227382976120675 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 90287 | 0.5078001858827533 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 84981 | 0.47795770815845307 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 83956 | 0.4721928118773736 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 82099 | 0.46174850710277404 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 79644 | 0.4479408774734569 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 73740 | 0.4147350748944391 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 71664 | 0.4030590508168577 | No Hit |
CCTGTCTGAGGGTCGCT | 71006 | 0.39935826861885737 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 69385 | 0.3902412960611698 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 67838 | 0.3815405208935308 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 67099 | 0.3773841712820989 | No Hit |
AACCCGTAGATCCGAACTTGTG | 64427 | 0.3623560709279093 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 61218 | 0.34430772735133947 | No Hit |
AACATTCAACGCTGTCGGTGG | 60581 | 0.34072505522348817 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 59982 | 0.3373561060797159 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 59746 | 0.3360287738628039 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 58833 | 0.33089379795585216 | No Hit |
TTCAAGTAATCCAGGATAGGC | 56693 | 0.31885781937876917 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 51854 | 0.2916418846430193 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 51496 | 0.2896283891614326 | No Hit |
TGCTCAGTAGTCAGTGTAGATC | 51133 | 0.2875867722345722 | No Hit |
TCCCTGAGACCCTTAACCTGT | 49832 | 0.28026957217439236 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 49781 | 0.27998273343260205 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 49638 | 0.27917846009777825 | No Hit |
TAACGGAACCCATAATGCAGCTG | 49450 | 0.2781210937554925 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 49373 | 0.2776880234982797 | No Hit |
TGAGATGAAGCACTGTAGCTC | 48639 | 0.27355979533212127 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 47856 | 0.26915597700228205 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 45918 | 0.2582561048142508 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 44002 | 0.24747996698542327 | No Hit |
ACCATCGACCGTTGACTGTGCC | 42983 | 0.24174881643867205 | No Hit |
AACATTCAACGCTGTCGGTG | 42278 | 0.2377836926551003 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 39912 | 0.22447662475165248 | No Hit |
TGAGATGAAGCACTGTAGCT | 38853 | 0.21852050264271283 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 38782 | 0.21812117811982829 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 38695 | 0.2176318649720684 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 37859 | 0.21292995932232942 | No Hit |
CCTTGGCTTTAGACTGCTTACT | 37475 | 0.21077023232532016 | No Hit |
ACCATCGACCGTTGACTGTACC | 36110 | 0.2030930777656387 | No Hit |
TTCACAGTGGTTAAGTTCTG | 35870 | 0.20174324839250787 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 35455 | 0.19940916843480253 | No Hit |
TAAGGCACGCGGTGAATGCC | 33594 | 0.1889423665039841 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 33379 | 0.1877331443572211 | No Hit |
TCACAGTGAACCGGTCTCT | 32614 | 0.18343056323036666 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 31176 | 0.17534283556969127 | No Hit |
AACATTCAACGCTGTCGGTGT | 29868 | 0.16798626548612838 | No Hit |
TACCCTGTAGAACCGAATTTGT | 29728 | 0.16719886501846876 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 29203 | 0.1642461132647451 | No Hit |
CATTATTACTTTTGGTACGCG | 28890 | 0.16248571079062038 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 28532 | 0.1604722153090336 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 28518 | 0.16039347526226763 | No Hit |
TTGCATAGTCACAAAAATGAGC | 27836 | 0.15655771012695427 | No Hit |
TCCCTGAGACCCTAACTTGTG | 27140 | 0.15264320494487493 | No Hit |
ACCATTGACCGTTGACTGTACC | 26937 | 0.15150147426676847 | No Hit |
TAACAGTCTACAGCCATGGTCG | 25448 | 0.1431269078643028 | No Hit |
GTACAGTACTGTGATAACTGA | 24776 | 0.13934738561953652 | No Hit |
TCTTTGGTTATCTAGCTGTA | 24104 | 0.13556786337477028 | No Hit |
TAACAGTCTACAGCCATGGTC | 23948 | 0.13469047428223527 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 23679 | 0.13317754052651784 | No Hit |
TACAGTACTGTGATAACTGAAG | 23673 | 0.13314379479218955 | No Hit |
ACCATCGACCGTTGACTGTGCCT | 23538 | 0.13238451576980348 | No Hit |
CTGTCTGAGGGTCGCT | 23403 | 0.13162523674741738 | No Hit |
TATTGCACTCGTCCCGGCCTC | 23258 | 0.1308097148344842 | No Hit |
TACCCTGTAGAACCGAATGTGT | 23112 | 0.1299885686324963 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 23008 | 0.1294036425708063 | No Hit |
TACCCTGTAGATCCGGATTTGT | 22966 | 0.12916742243050838 | No Hit |
TTTGGCAATGGTAGAACTCACA | 22070 | 0.12412805943748673 | No Hit |
TAATACTGTCTGGTAATGCCG | 21611 | 0.12154651076137406 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 21452 | 0.12065224880167492 | No Hit |
TTCACAGTGGCTAAGTTCTGCT | 21198 | 0.11922367938177814 | No Hit |
TGAGGTAGTTGTTTGTACAGTT | 21162 | 0.11902120497580852 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 20447 | 0.11499983830168968 | No Hit |
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT | 20087 | 0.11297509424199348 | No Hit |
TATTGCACTCGTCCCGGCCT | 19382 | 0.10900997045842173 | No Hit |
AACATTCATTGCTGTCGGTGGGTT | 18770 | 0.1055679055569382 | No Hit |
ATAGCTCTTTAAATGGTACTGC | 18728 | 0.10533168541664031 | No Hit |
CTTTTTGCGGTCTGGGCTTGC | 18584 | 0.10452178779276182 | No Hit |
AGCAGCATTGTACAGGGCTATGT | 18444 | 0.10373438732510219 | No Hit |
AACATTCAACGCTGTCGGTGAT | 18439 | 0.10370626587982863 | No Hit |
AACCCGTAGATCCGAACTTGT | 18422 | 0.10361065296589853 | No Hit |
AGCTACATTGTCTGCTGGGTT | 18193 | 0.10232269077236957 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 18161 | 0.10214271352261878 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCCTCC | 1245 | 0.0 | 1505.2831 | 44 |
ACACTAT | 20 | 2.3646862E-11 | 1434.1727 | 41 |
ACATCGA | 150 | 0.0 | 1375.4698 | 44 |
GCGTCCC | 35 | 0.0 | 1358.6204 | 42 |
CACCCTC | 1335 | 0.0 | 1358.3279 | 43 |
CGTATAC | 415 | 0.0 | 1346.4688 | 44 |
ACGCAGC | 415 | 0.0 | 1302.8508 | 43 |
ACAAATT | 75 | 0.0 | 1260.8473 | 44 |
AACATCG | 165 | 0.0 | 1260.3336 | 43 |
GTTACAG | 1025 | 0.0 | 1217.2977 | 41 |
TTTCACC | 1275 | 0.0 | 1197.7682 | 40 |
GGTTACA | 1070 | 0.0 | 1141.7977 | 40 |
GGTTCAC | 5 | 0.006483132 | 1123.6536 | 37 |
GCTTGCG | 1015 | 0.0 | 1114.557 | 43 |
GAGTTTC | 45 | 0.0 | 1109.0935 | 43 |
TTTTCAC | 1300 | 0.0 | 1064.9978 | 39 |
TTCACCC | 1490 | 0.0 | 1058.7852 | 41 |
GAAGTTA | 130 | 0.0 | 1058.0537 | 44 |
GGGTCAA | 5 | 0.0073330784 | 1056.5157 | 36 |
AGCTTGC | 1060 | 0.0 | 1054.2126 | 42 |