Basic Statistics
Measure | Value |
---|---|
Filename | P2_CGATGT_L004_R1_001_prinseq_good_3U92.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34655232 |
Sequences flagged as poor quality | 0 |
Sequence length | 15-50 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 3162337 | 9.125135852502734 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 1837178 | 5.301300536669326 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 1524639 | 4.399448256471058 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 1486775 | 4.29018914084892 | No Hit |
TCACAGTGAACCGGTCTCTTT | 1304933 | 3.7654718340941993 | No Hit |
AACATTCAACGCTGTCGGTGA | 730877 | 2.1089946822459593 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 588582 | 1.698392900673699 | No Hit |
TACCCTGTAGATCCGGATTTGT | 536147 | 1.5470881857030996 | No Hit |
TCACAGTGAACCGGTCTCTT | 523045 | 1.5092814845389002 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 450781 | 1.3007588579986997 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 397044 | 1.1456971345625389 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 382357 | 1.103316809421446 | No Hit |
AACATTCATTGCTGTCGGTGGG | 346327 | 0.9993498240034867 | No Hit |
TCCCATATGGTCTAGCGGTTAGGATTCCT | 330144 | 0.9526526903643294 | No Hit |
TTCACAGTGGCTAAGTTCTG | 311376 | 0.8984963655704281 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 303184 | 0.8748577992494755 | No Hit |
TACCCTGTAGAACCGAATTTGT | 286221 | 0.8259099232115947 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 276941 | 0.7991318598011405 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 268350 | 0.7743419521762256 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 258275 | 0.7452698628593801 | No Hit |
TAACAGTCTACAGTCATGGCT | 250759 | 0.7235819399506546 | No Hit |
TAAAGGGAATTTGCGACTGTT | 238764 | 0.6889695616523358 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 227612 | 0.6567897164849452 | No Hit |
TTGCATAGTCACAAAAGTGATC | 223560 | 0.6450973982802943 | No Hit |
AAGCTGCCAGCTGAAGAACT | 214114 | 0.6178403307183169 | No Hit |
TCCAGCATCAGTGATTTTGTT | 200610 | 0.5788736315486215 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 199661 | 0.5761352282968413 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 184340 | 0.5319254535649913 | No Hit |
TACCCTGTAGAACCGAATGTGT | 183316 | 0.5289706327748722 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 179071 | 0.5167214001048961 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 170030 | 0.4906329872499483 | No Hit |
TCCCTGAGACCCTTAACCTGT | 166484 | 0.4804007660372899 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 165012 | 0.47615321115149367 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 163487 | 0.4717527212052714 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 147467 | 0.4255259350161038 | No Hit |
TACCCTGTAGAACCGAATTTGC | 138568 | 0.39984727270041076 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 138258 | 0.398952746875277 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 136571 | 0.39408479504624294 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 135307 | 0.39043743813343973 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 134296 | 0.3875201297166327 | No Hit |
CGGACAACTCTTAGCGG | 131831 | 0.3804072066232308 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 130452 | 0.37642800948497473 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 128826 | 0.37173607725378954 | No Hit |
TGAGGTAGTTGGTTGTATGGTT | 127205 | 0.36705857285849364 | No Hit |
AACCCGTAGATCCGAACTTGTG | 125417 | 0.3618991787444967 | No Hit |
TCACAGTGAACCGGTCTCT | 123488 | 0.35633291965842273 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 121036 | 0.3492575089383329 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 116978 | 0.3375478773306149 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 116137 | 0.3351211153340425 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 112020 | 0.3232412352628313 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 111159 | 0.32075676192270186 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 106843 | 0.3083026539830984 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 105441 | 0.30425708879975183 | No Hit |
TTCAAGTAATCCAGGATAGGC | 104711 | 0.3021506247599208 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 97713 | 0.28195742564932186 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 95443 | 0.27540718815560083 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 88854 | 0.2563941860207428 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 87808 | 0.25337588275271106 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 84558 | 0.2439977894246964 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 78653 | 0.2269585152394882 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 77914 | 0.2248260810950566 | No Hit |
ACCATCGACCGTTGACTGTACC | 77092 | 0.22245414487486334 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 77068 | 0.22238489126259492 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 76029 | 0.2193867869648081 | No Hit |
AACATTCAACGCTGTCGGTGG | 75394 | 0.2175544518068729 | No Hit |
TGCTCAGTAGTCAGTGTAGATC | 74522 | 0.21503823722778714 | No Hit |
TGAGGTAGTAGTTTGTATAGT | 73301 | 0.21151495970363146 | No Hit |
CCGGACAACTCTTAGCGG | 70392 | 0.20312084478326392 | No Hit |
CCTTGGCTTTAGACTGCTTACT | 67124 | 0.19369081124604792 | No Hit |
TACCCTGTAGATCCGGATTTGTG | 66228 | 0.19110534305469373 | No Hit |
TAACAGTCTACAGCCATGGTCG | 65327 | 0.18850544702745028 | No Hit |
CCTGTCTGAGGGTCGCT | 63034 | 0.18188884148863874 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 62995 | 0.18177630436870254 | No Hit |
AACCCGTAGATCCGAACTTGT | 61167 | 0.17650148756759154 | No Hit |
TGAGATGAAGCACTGTAGCTC | 60702 | 0.17515969882989096 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 60234 | 0.17380925339065686 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 58515 | 0.16884896341193156 | No Hit |
ACCATCGACCGTTGACTGTGCC | 57975 | 0.16729075713589223 | No Hit |
AACATTCAACGCTGTCGGTG | 57543 | 0.16604419211506072 | No Hit |
TCTTTGGTTATCTAGCTGTAA | 53748 | 0.15509346467511745 | No Hit |
TCCCTGAGACCCTAACTTGTG | 51569 | 0.14880581379458085 | No Hit |
TAAGGCACGCGGTGAATGCC | 51547 | 0.14874233131666814 | No Hit |
TACAGTACTGTGATAACTGAAG | 50153 | 0.1447198506707443 | No Hit |
TAACAGTCTACAGCCATGGTC | 50076 | 0.1444976619980498 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 49941 | 0.14410811042903998 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 48414 | 0.13970184934846203 | No Hit |
TAAAGGGAATTTGCGACTGTTA | 47941 | 0.13833697607333867 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 47653 | 0.13750593272611766 | No Hit |
TGAGGTAGTAGTTTGTGCTGTTT | 47650 | 0.13749727602458411 | No Hit |
TGAGGTAGTTGTTTGTACAGTT | 47613 | 0.13739051003900363 | No Hit |
TGAGGTAGTAGATTGAATAGT | 46694 | 0.13473867380255886 | No Hit |
AAGCCCTTACCCCAAAAAGCAT | 46355 | 0.13376046652926749 | No Hit |
GTACAGTACTGTGATAACTGA | 45820 | 0.13221668808911738 | No Hit |
TTTGGCAATGGTAGAACTCACA | 43644 | 0.12593769391011436 | No Hit |
AGCTACATTGTCTGCTGGGTT | 43564 | 0.1257068485358863 | No Hit |
CTCTCACTGTCGACCTTGACTAGCCT | 42738 | 0.12332337004698166 | No Hit |
TATTGCACTCGTCCCGGCCTC | 42111 | 0.12151411942646928 | No Hit |
ATAGCTCTTTAAATGGTACTGC | 42059 | 0.12136406993322105 | No Hit |
TGATGTAGTAGGTTGTATAGTT | 40662 | 0.11733293258576367 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 40435 | 0.11667790883639158 | No Hit |
TAAAGCTAGAGAACCGAAAGTAA | 40313 | 0.11632586964069379 | No Hit |
TTCACAGTGGCTAAGTTCTGCA | 40278 | 0.11622487478946902 | No Hit |
TACCCTGTAGAACCGAATGTGTG | 40217 | 0.11604885519162011 | No Hit |
TAGCAGCACGTAAATATTGGAG | 40130 | 0.11579781084714712 | No Hit |
TACCCTGTAGAACCGAATTTG | 39498 | 0.1139741323907455 | No Hit |
TCTTTGGTTATCTAGCTGTA | 38513 | 0.11113184872056259 | No Hit |
AGCAGCATTGTACAGGGCTATGT | 37749 | 0.10892727539668469 | No Hit |
AACATTCAACGCTGTCGGTGT | 37695 | 0.10877145476908075 | No Hit |
TATGGCTTTTTATTCCTATCTG | 37139 | 0.10716707941819578 | No Hit |
CATTATTACTTTTGGTACGCG | 36791 | 0.10616290204030375 | No Hit |
TTCACAGTGGTTAAGTTCTG | 36217 | 0.10450658648021748 | No Hit |
CTTTTTGCGGTCTGGGCTTGC | 36142 | 0.10429016894187867 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 35914 | 0.10363225962532874 | No Hit |
ACCATCGACCGTTGACTGTGCCT | 35729 | 0.10309842969742636 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGATAAT | 5 | 0.0010188362 | 2834.9006 | 42 |
CTTCTAC | 5 | 0.0013524425 | 2460.5374 | 40 |
ACCCTCC | 290 | 0.0 | 2364.6738 | 44 |
GACTGAT | 1615 | 0.0 | 2231.7046 | 44 |
AAAAGAT | 295 | 0.0 | 2216.4739 | 44 |
TATACTT | 140 | 0.0 | 2164.3442 | 44 |
GAAGTCA | 540 | 0.0 | 2155.9065 | 44 |
ACGCAGC | 455 | 0.0 | 2102.4756 | 43 |
CCGCGTA | 5 | 0.0019082477 | 2071.421 | 38 |
GTATACT | 140 | 0.0 | 2060.7598 | 43 |
TGAAGTC | 550 | 0.0 | 2043.0116 | 43 |
CAAAAGA | 325 | 0.0 | 1915.5889 | 43 |
ATGAAGT | 585 | 0.0 | 1793.014 | 42 |
CTAAAAG | 80 | 0.0 | 1771.8129 | 42 |
CACCCTC | 380 | 0.0 | 1718.2512 | 43 |
GAAATAT | 75 | 0.0 | 1619.6848 | 43 |
CCCAATT | 10 | 0.003218738 | 1594.7802 | 44 |
GTATACG | 100 | 0.0 | 1594.78 | 44 |
TTCAAAA | 350 | 0.0 | 1579.8824 | 41 |
GCGTGCG | 10 | 0.003550425 | 1518.4546 | 43 |