Basic Statistics
Measure | Value |
---|---|
Filename | nfu_brain_grz_10_JG62_1_GGCTAC_L001_R1_001_TRIMMED_prinseq_good_aYgU.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19317934 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 1611356 | 8.341243944616437 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 1288162 | 6.668218247355022 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 945983 | 4.896915995261191 | No Hit |
TCACAGTGAACCGGTCTCTTT | 642178 | 3.3242581737777965 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 439972 | 2.2775313343549057 | No Hit |
AACATTCAACGCTGTCGGTGA | 355186 | 1.8386334687756984 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 214564 | 1.110698483595606 | No Hit |
TACCCTGTAGAACCGAATTTGT | 195146 | 1.0101804882447574 | No Hit |
TTGCATAGTCACAAAAGTGATC | 187986 | 0.9731164833672171 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 185490 | 0.9601958470300188 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 185284 | 0.9591294804092404 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 177036 | 0.9164334032821523 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 166047 | 0.8595484382543185 | No Hit |
TACCCTGTAGAACCGAATGTGT | 163567 | 0.8467106265090252 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 149272 | 0.7727120301787965 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 140729 | 0.7284888746384577 | No Hit |
CCTGTCTGAGGGTCGCT | 136827 | 0.7082900272875972 | No Hit |
AACATTCATTGCTGTCGGTGGG | 128533 | 0.6653558294587816 | No Hit |
TTCACAGTGGCTAAGTTCTG | 128157 | 0.6634094515490114 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 127681 | 0.6609454199398341 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 126080 | 0.6526577842123283 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 125158 | 0.6478850171037959 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 121911 | 0.631076801484051 | No Hit |
TCACAGTGAACCGGTCTCTT | 114076 | 0.5905186341355136 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 112478 | 0.58224652801899 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 112056 | 0.5800620294074925 | No Hit |
TACCCTGTAGATCCGGATTTGT | 107420 | 0.5560636039029847 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 106540 | 0.5515082513482031 | No Hit |
TCCAGCATCAGTGATTTTGTT | 105345 | 0.5453222896402897 | No Hit |
TAACAGTCTACAGTCATGGCT | 98515 | 0.5099665419707925 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 98048 | 0.5075490991945619 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 93354 | 0.4832504345443979 | No Hit |
AACCCGTAGATCCGAACTTGTG | 88159 | 0.456358324860205 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 87495 | 0.45292110429614263 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 85114 | 0.44059576971326225 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 80738 | 0.41794324382721254 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 79012 | 0.409008540975448 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 76464 | 0.39581872471455803 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 72431 | 0.37494175101747423 | No Hit |
TAAAGGGAATTTGCGACTGTT | 71236 | 0.36875578930956077 | No Hit |
TCCCTGAGACCCTTAACCTGT | 69989 | 0.3623006476779556 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 65089 | 0.3369356164070133 | No Hit |
AAGCTGCCAGCTGAAGAACT | 64254 | 0.3326132080169649 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 63675 | 0.32961599309739853 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 63019 | 0.32622018482928866 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 58845 | 0.3046133194160411 | No Hit |
CTGTCTGAGGGTCGCT | 58443 | 0.302532351544425 | No Hit |
TACCCTGTAGAACCGAATTTGC | 58373 | 0.3021699939548401 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 57547 | 0.29789417439773835 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 54019 | 0.2796313518826599 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 51311 | 0.2656132897027187 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 50781 | 0.2628697250958617 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 50321 | 0.2604885180785896 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 50207 | 0.2598983928612656 | No Hit |
TACCCTGTAGATCCGGATTTGTG | 49784 | 0.25770871771277404 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 48108 | 0.24903284171071297 | No Hit |
TAGCAGCACGTAAATATTGGAG | 47670 | 0.24676551850731035 | No Hit |
TTCAAGTAATCCAGGATAGGC | 46531 | 0.2408694428710648 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 45224 | 0.23410370901981548 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 43999 | 0.22776245120207989 | No Hit |
TGATGTAGTAGGTTGTATAGTT | 42455 | 0.21976987808323603 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 42340 | 0.21917457632891799 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 40529 | 0.20979986783265747 | No Hit |
TGAGATGAAGCACTGTAGCTC | 40206 | 0.2081278463835729 | No Hit |
TAAGGCACGCGGTGAATGCC | 39112 | 0.20246471491206047 | No Hit |
TACCCTGTAGAACCGAATGTGTG | 38598 | 0.19980397489710858 | No Hit |
ACCATCGACCGTTGACTGTGCC | 38463 | 0.1991051424029091 | No Hit |
TGTCTGAGGGTCGCT | 38461 | 0.199094789328921 | No Hit |
AACAGTCAACGCTGTCGGTGAG | 37165 | 0.19238599738460646 | No Hit |
TTGCATAGTCACAAAAATGAGC | 36967 | 0.1913610430597806 | No Hit |
AACATTCAACGCTGTCGGTGG | 36806 | 0.19052762060373538 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 36052 | 0.1866245117102067 | No Hit |
AACTCCAGTCACGGCTACATCT | 35623 | 0.18440377733975072 | Illumina PCR Primer Index 11 (100% over 22bp) |
TGTAAACATCCTACACTCTCAGCT | 34589 | 0.17905123808788248 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 32907 | 0.170344302863857 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 32680 | 0.16916922896620312 | No Hit |
ACCATCGACCGTTGACTGTACC | 32580 | 0.16865157526679614 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 31509 | 0.1631075041461473 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 30115 | 0.15589141157641392 | No Hit |
AACAGTCAACGCTGTCGGTGAGT | 29521 | 0.1528165486019364 | No Hit |
AACATTCAACGCTGTCGGTGAGTT | 29341 | 0.15188477194300384 | No Hit |
AACATTCATTGCTGTCGGTGGGTT | 29182 | 0.15106170256094673 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 29179 | 0.15104617294996453 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 28805 | 0.14911014811418238 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 28425 | 0.14714306405643585 | No Hit |
GTACAGTACTGTGATAACTGA | 28096 | 0.14543998338538686 | No Hit |
CATTATTACTTTTGGTACGCG | 27582 | 0.14277924337043496 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 26773 | 0.13859142494223245 | No Hit |
ACCCTGTAGAACCGAATTTGCG | 26552 | 0.13744741026654297 | No Hit |
TACAGTACTGTGATAACTGAAG | 26389 | 0.1366036347365096 | No Hit |
TTAGGTAGTAGGTTGTATAGTT | 26135 | 0.13528879434001587 | No Hit |
AAGGTCCAACCTCACATGTCCT | 26102 | 0.13511796861921155 | No Hit |
TAAATCTAGAGAACCGAAAGTA | 25625 | 0.13264876047304025 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 25220 | 0.13055226299044193 | No Hit |
TCCCTGAGACCCTAACTTGTG | 25212 | 0.13051085069448937 | No Hit |
TGAGATGAAGCACTGTAGCT | 24856 | 0.1286680035246005 | No Hit |
AAGCCCTTACCCCAAAAAGCAT | 24552 | 0.12709433627840327 | No Hit |
TTCACAGTGGCTAAGTTCTGCT | 24480 | 0.12672162561483025 | No Hit |
AACATTCAACGCTGTCGGTG | 24229 | 0.1254223148293187 | No Hit |
AACTTTCAACGCTGTCGGTGAG | 24224 | 0.12539643214434837 | No Hit |
AATATTCAACGCTGTCGGTGAG | 24111 | 0.12481148346401846 | No Hit |
TTCACAGTGGTTAAGTTCTG | 24052 | 0.12450606778136833 | No Hit |
TCCCTGAGACCCTTAACCTGTGG | 23514 | 0.12172109087855876 | No Hit |
TAAGGCACGCGGTGAATGCCA | 23102 | 0.11958835763700197 | No Hit |
TGCTCAGTAGTCAGTGTAGATC | 22621 | 0.11709844334285437 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 22218 | 0.11501229893424421 | No Hit |
TAACAGTCTACAGCCATGGTCG | 22036 | 0.1140701692013235 | No Hit |
CCACGTTCCCGTGG | 21772 | 0.11270356343488905 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 21620 | 0.11191672981179043 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 21579 | 0.11170449179503357 | No Hit |
AACTCCAGTCACGGCTACATCTCG | 21311 | 0.11031717988062284 | Illumina PCR Primer Index 11 (100% over 24bp) |
TATGGCTTTTTATTCCTATCTG | 20961 | 0.1085053919326984 | No Hit |
CCTTTCTGAGGGTCGCT | 20231 | 0.1047265199270274 | No Hit |
TAAAGCTAGAGAACCGAAAGTAA | 20111 | 0.10410533548773902 | No Hit |
AACCCGTAGATCCGAACTTGT | 20034 | 0.10370674213919563 | No Hit |
TTACAATTAAAGGATATTTCTT | 19875 | 0.10288367275713853 | No Hit |
AACGTTCAACGCTGTCGGTGAG | 19795 | 0.10246954979761293 | No Hit |
AACTTTCAACGCTGTCGGTGAGT | 19412 | 0.10048693612888418 | No Hit |
TGTAAACATCCCCGACTGGAAGCT | 19355 | 0.10019187352022219 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCCCATA | 5 | 0.0016836404 | 2205.0898 | 23 |
CGTATGC | 1185 | 0.0 | 2056.2231 | 23 |
CAACCCG | 490 | 0.0 | 1890.0769 | 23 |
AATAACC | 455 | 0.0 | 1647.7595 | 23 |
TAACTAA | 240 | 0.0 | 1470.0598 | 23 |
CGTATTC | 40 | 0.0 | 1378.1812 | 23 |
GATTCCT | 575 | 0.0 | 1342.2285 | 23 |
TAACTGC | 365 | 0.0 | 1298.8887 | 23 |
AACGCAT | 5 | 0.0064167427 | 1129.4562 | 22 |
TCGCGAT | 5 | 0.0064167427 | 1129.4562 | 22 |
ATAACTA | 2690 | 0.0 | 1039.1837 | 22 |
TCGTATG | 1215 | 0.0 | 1036.4968 | 22 |
ACAACCC | 1300 | 0.0 | 1020.85455 | 22 |
TCTGACT | 3600 | 0.0 | 888.1612 | 23 |
TAACACC | 50 | 2.6011548E-10 | 882.03595 | 23 |
ATAAAAA | 155 | 0.0 | 874.4177 | 22 |
TAATAAC | 615 | 0.0 | 835.6139 | 22 |
GTATGCC | 70 | 1.8189894E-12 | 787.5321 | 23 |
GATAAAA | 715 | 0.0 | 756.5735 | 21 |
GATAACA | 550 | 0.0 | 716.5832 | 21 |