Basic Statistics
Measure | Value |
---|---|
Filename | nfu_brain_grz_12_JG11_1_GTCCGC_L008_R1_001_TRIMMED_prinseq_good_DAm1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16466547 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 1517804 | 9.217500183857611 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 1273701 | 7.735082528231328 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 968054 | 5.878913168619991 | No Hit |
TCACAGTGAACCGGTCTCTTT | 669866 | 4.068041709048047 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 395458 | 2.4015842544280837 | No Hit |
AACATTCAACGCTGTCGGTGA | 355054 | 2.1562140502195146 | No Hit |
CCTGTCTGAGGGTCGCT | 199481 | 1.2114318806486872 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 182894 | 1.1107003793812995 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 163257 | 0.9914464763013155 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 161749 | 0.9822885150116778 | No Hit |
TTGCATAGTCACAAAAGTGATC | 157842 | 0.9585616219356736 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 154779 | 0.9399602721809253 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 149086 | 0.905387146436955 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 141533 | 0.8595183920466142 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 141509 | 0.8593726419995643 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 133372 | 0.8099573031310086 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 130700 | 0.7937304645594488 | No Hit |
TCACAGTGAACCGGTCTCTT | 124032 | 0.7532362431540748 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 123144 | 0.747843491413227 | No Hit |
AACATTCATTGCTGTCGGTGGG | 112276 | 0.6818430117741139 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 104249 | 0.6330956939545371 | No Hit |
TAACAGTCTACAGTCATGGCT | 104016 | 0.6316807039144273 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 100323 | 0.6092534154246182 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 97371 | 0.5913261596374759 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 96063 | 0.5833827820732543 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 93405 | 0.5672409643624738 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 91497 | 0.5556538356220039 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 91070 | 0.5530606993682403 | No Hit |
AAGCTGCCAGCTGAAGAACT | 82533 | 0.5012161930488523 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 79199 | 0.48096908234616526 | No Hit |
CTGTCTGAGGGTCGCT | 77758 | 0.47221800660454194 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 75148 | 0.4563676889878613 | No Hit |
TTCACAGTGGCTAAGTTCTG | 74133 | 0.45020367658137433 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 74051 | 0.4497056972539537 | No Hit |
TCCCTGAGACCCTTAACCTGT | 70966 | 0.43097074328940976 | No Hit |
AACCCGTAGATCCGAACTTGTG | 69289 | 0.4207864587517954 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 69282 | 0.4207439483214058 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 68454 | 0.41571557169818296 | No Hit |
TCCAGCATCAGTGATTTTGTT | 67288 | 0.4086345485790069 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 64100 | 0.3892740839958736 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 62914 | 0.3820716025041559 | No Hit |
TACCCTGTAGAACCGAATTTGT | 62869 | 0.38179832116593726 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 61464 | 0.3732658704948888 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 61340 | 0.3725128285851308 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 61338 | 0.3725006827478766 | No Hit |
TAAAGGGAATTTGCGACTGTT | 54402 | 0.3303789191504448 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 50079 | 0.3041256919255749 | No Hit |
TGTCTGAGGGTCGCT | 48774 | 0.2962005331172346 | No Hit |
TACCCTGTAGAACCGAATGTGT | 46469 | 0.28220245568181357 | No Hit |
TTCAAGTAATCCAGGATAGGC | 46084 | 0.2798643820103875 | No Hit |
TACCCTGTAGATCCGGATTTGT | 45522 | 0.27645140174196814 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 44386 | 0.26955256618160445 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 43809 | 0.26604849213377885 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 43718 | 0.26549585653871455 | No Hit |
TAGCAGCACGTAAATATTGGAG | 42146 | 0.2559492284569437 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 42070 | 0.2554876866412855 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 40638 | 0.24679126716730593 | No Hit |
AACATTCAACGCTGTCGGTGG | 38651 | 0.23472437785529657 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 35831 | 0.21759874732692897 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 35108 | 0.2132080271595496 | No Hit |
ACCATCGACCGTTGACTGTGCC | 34468 | 0.20932135923821793 | No Hit |
TAAATCTAGAGAACCGAAAGTA | 34111 | 0.20715332728835015 | No Hit |
ACCATCGACCGTTGACTGTACC | 33860 | 0.20562902471295288 | No Hit |
TTGCATAGTCACAAAAATGAGC | 33695 | 0.20462699313948457 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 33570 | 0.20386787831109948 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 33285 | 0.20213709650238146 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 31653 | 0.19222609330298573 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 31171 | 0.18929894652473284 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 30208 | 0.18345072588685413 | No Hit |
CCACGTTCCCGTGG | 29866 | 0.1813737877163925 | No Hit |
ATCTACATCTGGCTACTGGGTCTC | 29705 | 0.18039604781743254 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 29451 | 0.17885352648615402 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 29348 | 0.1782280158675647 | No Hit |
TAACAGTCTACAGCCATGGTCG | 29224 | 0.1774749739578067 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 28699 | 0.17428669167858934 | No Hit |
AACATTCAACGCTGTCGGTGAGTT | 28248 | 0.17154780537777592 | No Hit |
AACAGTCAACGCTGTCGGTGAG | 28111 | 0.17071581552586587 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 27731 | 0.1684081064475752 | No Hit |
GTACAGTACTGTGATAACTGA | 27326 | 0.1659485744036075 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 26772 | 0.1625841774842048 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 26631 | 0.16172789595778642 | No Hit |
CCTTTCTGAGGGTCGCT | 26205 | 0.15914083262265002 | No Hit |
AACATTCAACGCTGTCGGTG | 25495 | 0.15482906039742272 | No Hit |
TGATGTAGTAGGTTGTATAGTT | 24925 | 0.1513674967799867 | No Hit |
AACATTCATTGCTGTCGGTGGGTT | 24650 | 0.14969744415753952 | No Hit |
TACCCTGTAGAACCGAATTTGC | 24634 | 0.14960027745950624 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 24068 | 0.14616300551657857 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 23861 | 0.14490591136077285 | No Hit |
TGAGATGAAGCACTGTAGCTC | 23642 | 0.14357594218144218 | No Hit |
AACAGTCAACGCTGTCGGTGAGT | 23599 | 0.1433148066804777 | No Hit |
TGCTCAGTAGTCAGTGTAGATC | 23475 | 0.1425617647707197 | No Hit |
CCTTGGCTTTAGACTGCTTACT | 22884 | 0.13897266986211498 | No Hit |
AAGCCCTTACCCCAAAAAGCAT | 22707 | 0.1378977632651217 | No Hit |
AATATTCAACGCTGTCGGTGAG | 22585 | 0.13715686719261785 | No Hit |
TAAAGCTAGAGAACCGAAAGTAA | 22424 | 0.13617912729365786 | No Hit |
TGAGTTAGTAGGTTGTATAGTT | 22355 | 0.13576009590838928 | No Hit |
TCCCTGAGACCCTAACTTGTG | 21686 | 0.1316973133468723 | No Hit |
TACCCTGTAGATCCGGATTTGTG | 21296 | 0.1293288750823108 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 21232 | 0.12894020829017766 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 21184 | 0.12864870819607777 | No Hit |
TCCCTGAGACCCTTAACCTGTGG | 20877 | 0.126784322177564 | No Hit |
AAGGTCCAACCTCACATGTCCT | 20749 | 0.12600698859329768 | No Hit |
TTAGGTAGTAGGTTGTATAGTT | 20551 | 0.1248045507051357 | No Hit |
TACAGTACTGTGATAACTGAAG | 20304 | 0.12330453980424676 | No Hit |
TAAGGCACGCGGTGAATGCC | 19574 | 0.11887130920647784 | No Hit |
AACCCGTAGATCCGAACTTGT | 19499 | 0.11841584030944678 | No Hit |
AATATTCAACGCTGTCGGTGAGT | 18977 | 0.11524577678611064 | No Hit |
TAACAGTCTACAGCCATGGTC | 18716 | 0.1136607450244426 | No Hit |
TCACAGTGAACCGGTCTCT | 18234 | 0.11073359824618968 | No Hit |
CATTATTACTTTTGGTACGCG | 18033 | 0.10951294160214647 | No Hit |
GAAGGATCATTA | 17759 | 0.10784896189832635 | No Hit |
TAGCAGCACGGAATGGTTTGT | 17628 | 0.10705340955817877 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 17338 | 0.10529226315632537 | No Hit |
AACATTCAACGCTGTCGGTGT | 16908 | 0.10268090814668067 | No Hit |
TTCACAGTGGCTAAGTTCTGCT | 16879 | 0.10250479350649533 | No Hit |
ACCATCGACCGTTGACTGTGCCT | 16800 | 0.10202503293495595 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 16617 | 0.10091368882620018 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAACCCG | 100 | 0.0 | 3577.2268 | 23 |
TAACTGC | 225 | 0.0 | 3012.4016 | 23 |
AATAACC | 410 | 0.0 | 2938.9285 | 23 |
TAACTAA | 200 | 0.0 | 2918.264 | 23 |
TAAAAAA | 100 | 0.0 | 2824.1265 | 23 |
ACGCATA | 30 | 1.8189894E-12 | 2510.3347 | 23 |
TCGTTTT | 10 | 0.0023085286 | 1882.7512 | 23 |
AAGGTTA | 10 | 0.0023085286 | 1882.7512 | 23 |
CCACTGC | 10 | 0.0023085286 | 1882.7512 | 23 |
ACTACGA | 10 | 0.0023085286 | 1882.7512 | 23 |
ACTCCCT | 10 | 0.0023085286 | 1882.7512 | 23 |
CGCCGCT | 10 | 0.0023085286 | 1882.7512 | 23 |
CCTAGTA | 5 | 0.0026333858 | 1763.12 | 22 |
GCACGAC | 5 | 0.0026333858 | 1763.12 | 22 |
AAAAACC | 20 | 7.2759576E-12 | 1763.12 | 22 |
TCTAACA | 5 | 0.0026333858 | 1763.12 | 22 |
CTAATAG | 5 | 0.0026333858 | 1763.12 | 22 |
ATAACTA | 2340 | 0.0 | 1684.0055 | 22 |
ACAACCC | 555 | 0.0 | 1683.7001 | 22 |
ATAAAAA | 380 | 0.0 | 1438.3347 | 22 |