Basic Statistics
Measure | Value |
---|---|
Filename | nfu_brain_grz_5_JG20_1_ACAGTG_L007_R1_001_TRIMMED_prinseq_good_bVaq.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11762112 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 1019003 | 8.663435614284237 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 704251 | 5.9874536137727645 | No Hit |
TCACAGTGAACCGGTCTCTTT | 590136 | 5.017262205971173 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 464393 | 3.9482110015616243 | No Hit |
CCTGTCTGAGGGTCGCT | 248093 | 2.1092555486633695 | No Hit |
AACATTCAACGCTGTCGGTGA | 230929 | 1.9633293748605691 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 225292 | 1.9154043083419032 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 157868 | 1.3421739225064342 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 145650 | 1.238298019947438 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 132303 | 1.1248235010855194 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 126581 | 1.076175775234924 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 114188 | 0.9708120446396021 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 112450 | 0.956035786770267 | No Hit |
TTGCATAGTCACAAAAGTGATC | 102887 | 0.8747323609909513 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 98861 | 0.8405038142809726 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 98042 | 0.8335407790709695 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 95689 | 0.8135358683882623 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 95122 | 0.8087153055505678 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 88379 | 0.7513871658423249 | No Hit |
TCACAGTGAACCGGTCTCTT | 85259 | 0.7248613174232654 | No Hit |
AACATTCATTGCTGTCGGTGGG | 84016 | 0.7142934874281082 | No Hit |
CTGTCTGAGGGTCGCT | 80429 | 0.683797263620683 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 75991 | 0.6460659446194698 | No Hit |
AACCCGTAGATCCGAACTTGTG | 75792 | 0.6443740715953054 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 70753 | 0.6015331260236256 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 68777 | 0.5847334220248881 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 67837 | 0.5767416600011971 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 67396 | 0.5729923333496569 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 66630 | 0.566479897487798 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 64897 | 0.5517461489909294 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 64109 | 0.5450466718902184 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 57919 | 0.4924200687767639 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 57630 | 0.48996302704820355 | No Hit |
TGTCTGAGGGTCGCT | 56958 | 0.48424976738871384 | No Hit |
TAACAGTCTACAGTCATGGCT | 54356 | 0.4621278899571778 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 49415 | 0.4201201280858403 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 48830 | 0.41514653150726677 | No Hit |
AAGCTGCCAGCTGAAGAACT | 47655 | 0.40515682897765304 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 45646 | 0.3880765631206368 | No Hit |
TACCCTGTAGAACCGAATGTGT | 45108 | 0.38350255464324773 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 44597 | 0.37915809677717743 | No Hit |
TAAAGGGAATTTGCGACTGTT | 44593 | 0.37912408927920427 | No Hit |
CCTTTCTGAGGGTCGCT | 44484 | 0.37819738495943583 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 43900 | 0.3732322902553555 | No Hit |
TTCACAGTGGCTAAGTTCTG | 43635 | 0.3709792935146341 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 43298 | 0.36811416181039597 | No Hit |
CCACGTTCCCGTGG | 37423 | 0.3181656491623273 | No Hit |
TACCCTGTAGAACCGAATTTGT | 35015 | 0.2976931353824891 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 34179 | 0.2905855683061001 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 33561 | 0.28533140986924793 | No Hit |
TCCCTGAGACCCTTAACCTGT | 33033 | 0.2808424201367917 | No Hit |
ACCATCGACCGTTGACTGTACC | 30709 | 0.2610840638143898 | No Hit |
TAGCAGCACGTAAATATTGGAG | 29862 | 0.25388297611857463 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 29657 | 0.2521400918474505 | No Hit |
AACATTCAACGCTGTCGGTGG | 27631 | 0.23491529412404846 | No Hit |
TACCCTGTAGATCCGGATTTGT | 27252 | 0.2316930836910922 | No Hit |
TGAGATGAAGCACTGTAGCTC | 27236 | 0.2315570536991996 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 27007 | 0.2296101244402366 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 26956 | 0.22917652884107886 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 26506 | 0.22535068531909916 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 26291 | 0.22352278230304218 | No Hit |
AAGGTCCAACCTCACATGTCCT | 25657 | 0.2181325938742974 | No Hit |
ACCATCGACCGTTGACTGTGCC | 24387 | 0.20733521326782128 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 23690 | 0.20140940674599933 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 23403 | 0.19896936876642562 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 23367 | 0.19866330128466722 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 22790 | 0.19375771970203992 | No Hit |
TCCCTGAGACCCTTAACCTGTGG | 21810 | 0.1854258826986174 | No Hit |
AACATTCATTGCTGTCGGTGGGTT | 21659 | 0.18414209965013087 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 21604 | 0.183674496553 | No Hit |
CCTGTCTGAGGGTCGCTT | 21364 | 0.1816340466746108 | No Hit |
AACATTCAACGCTGTCGGTGAGTT | 21101 | 0.179398053682876 | No Hit |
TGCTCAGTAGTCAGTGTAGATC | 21015 | 0.1786668924764532 | No Hit |
CATTATTACTTTTGGTACGCG | 20924 | 0.17789322189756396 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 20685 | 0.1758612738936681 | No Hit |
ATCTACATCTGGCTACTGGGTCTC | 20649 | 0.1755552064119097 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 20339 | 0.17291962531899033 | No Hit |
TCCAGCATCAGTGATTTTGTT | 20250 | 0.17216295848908766 | No Hit |
CACCACGTTCCCGTGG | 19957 | 0.1696719092625542 | No Hit |
TTGCATAGTCACAAAAATGAGC | 19468 | 0.16551449263533624 | No Hit |
TTCAAGTAATCCAGGATAGGC | 19070 | 0.1621307465870075 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 18920 | 0.16085546541301426 | No Hit |
AGCTACATCTGGCTACTGGGTCTCT | 18699 | 0.15897655114999756 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 17690 | 0.1503981597862697 | No Hit |
TAAATCTAGAGAACCGAAAGTA | 17646 | 0.15002407730856498 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 17628 | 0.1498710435676858 | No Hit |
TGATGTAGTAGGTTGTATAGTT | 17289 | 0.14698890811446108 | No Hit |
TCTTTGGTTATCTAGCTGTA | 16795 | 0.14278898211477667 | No Hit |
TACCCTGTAGAACCGAATTTGC | 16732 | 0.1422533640216995 | No Hit |
AACAGTCAACGCTGTCGGTGAG | 16582 | 0.14097808284770627 | No Hit |
AACATTCATTGCTGTCGCTGGGTT | 16553 | 0.1407315284874009 | No Hit |
TGTAAACATCCCCGACTGGAAGCT | 16376 | 0.13922669670208887 | No Hit |
AATATTCAACGCTGTCGGTGAG | 16302 | 0.13859755798958556 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 15716 | 0.13361545953651863 | No Hit |
TACGCCTGTCTGAGGGTCGCT | 15685 | 0.13335190142722667 | No Hit |
AAGCCCTTACCCCAAAAAGCAT | 15681 | 0.13331789392925353 | No Hit |
TTATGTAGTAGGTTGTATAGTT | 15359 | 0.1305802903424147 | No Hit |
GAAGGATCATTA | 15174 | 0.12900744356115637 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 15137 | 0.1286928742049047 | No Hit |
CCTTGGCTTTAGACTGCTTACT | 15090 | 0.12829328610372015 | No Hit |
TACCCTGTAGATCCGGATTTGTG | 14881 | 0.1265163943346229 | No Hit |
TACCCTGTAGAACCGAATGTGTG | 14831 | 0.1260913006099585 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 14491 | 0.12320066328224047 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 14438 | 0.1227500639340962 | No Hit |
TATGGCTTTTTATTCCTATCTG | 14423 | 0.12262253581669685 | No Hit |
ACCACGTTCCCGTGG | 14422 | 0.12261403394220358 | No Hit |
TCCCTGAGACCCTAACTTGTG | 14139 | 0.120208003460603 | No Hit |
CTTTTTGCGGTCTGGGCTTGC | 14080 | 0.11970639286549899 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 13889 | 0.11808253483728093 | No Hit |
TCACAGTGAACCGGTCTCT | 13464 | 0.1144692381776334 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 13396 | 0.1138911107120898 | No Hit |
TAACAGTCTACAGCCATGGTCG | 13382 | 0.11377208446918376 | No Hit |
AACATTCATTGCTGTCGCTGGGT | 12958 | 0.11016728968402953 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 12622 | 0.10731065985428467 | No Hit |
CAAGCTCGTATCTATAGGTATG | 12604 | 0.10715762611340549 | No Hit |
TCGTACCGTGAGTAATAATGCA | 12112 | 0.10297470386270766 | No Hit |
TGAGGTAGTTGTTTGTACAGTT | 11984 | 0.10188646392756676 | No Hit |
AACATTCAACGCTGTCGGTG | 11901 | 0.10118080834462383 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTACTAT | 5 | 4.6757728E-4 | 4182.974 | 23 |
TAACTGC | 125 | 0.0 | 3179.06 | 23 |
CAACCCG | 165 | 0.0 | 3168.9194 | 23 |
TAACTAA | 40 | 0.0 | 3137.2305 | 23 |
AATAACC | 175 | 0.0 | 2509.7844 | 23 |
ACTGACG | 5 | 0.0017989926 | 2132.975 | 22 |
TAGCCAT | 5 | 0.0017989926 | 2132.975 | 22 |
CCAAATT | 5 | 0.0017989926 | 2132.975 | 22 |
AGCCATC | 10 | 0.0018700118 | 2091.487 | 23 |
TAACAAA | 20 | 2.3778848E-6 | 2091.487 | 23 |
ACAACCC | 540 | 0.0 | 1994.7266 | 22 |
ATAACTA | 505 | 0.0 | 1879.5521 | 22 |
AACTGCA | 35 | 5.30963E-9 | 1792.703 | 23 |
GGAAAGT | 25 | 4.643476E-6 | 1673.1895 | 23 |
GGGCCCT | 25 | 4.643476E-6 | 1673.1895 | 23 |
TCTGACT | 1835 | 0.0 | 1538.696 | 23 |
AATGCTC | 35 | 0.0 | 1523.5535 | 22 |
GATTCCT | 305 | 0.0 | 1440.04 | 23 |
TAAAACC | 15 | 0.0042068576 | 1394.3246 | 23 |
GGGCAGC | 15 | 0.0042068576 | 1394.3246 | 23 |