Basic Statistics
Measure | Value |
---|---|
Filename | nfu_brain_grz_5_JG21_1_TGACCA_L002_R1_001_TRIMMED_prinseq_good_MaKT.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14031891 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 1545969 | 11.017538548439408 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 1239834 | 8.835829753808664 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 587501 | 4.18689825911561 | No Hit |
TCACAGTGAACCGGTCTCTTT | 573717 | 4.088664884868333 | No Hit |
AACATTCAACGCTGTCGGTGA | 327783 | 2.3359859337561844 | No Hit |
CCTGTCTGAGGGTCGCT | 224258 | 1.5982022665369906 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 214679 | 1.5299363428635528 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 175969 | 1.2540647586273297 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 168549 | 1.2011852144518511 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 151350 | 1.0786144219620863 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 131757 | 0.938982493521365 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 131596 | 0.9378351071854819 | No Hit |
AACATTCATTGCTGTCGGTGGG | 115648 | 0.8241797203242243 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 107581 | 0.7666892509356009 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 107325 | 0.7648648353953149 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 104837 | 0.7471337968631597 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 100893 | 0.7190263949456278 | No Hit |
CTGTCTGAGGGTCGCT | 94725 | 0.6750693830218607 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 88427 | 0.6301859100815421 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 88053 | 0.6275205530031555 | No Hit |
TCACAGTGAACCGGTCTCTT | 82297 | 0.5864997098395363 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 81049 | 0.5776056840806417 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 80814 | 0.5759309276276448 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 80742 | 0.5754178107569393 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 79739 | 0.5682698076830842 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 78500 | 0.5594399215330279 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 72172 | 0.5143426498965821 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 70107 | 0.4996261729798215 | No Hit |
TTGCATAGTCACAAAAGTGATC | 65453 | 0.46645886858727736 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 65299 | 0.465361368613824 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 63389 | 0.451749518293721 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 60574 | 0.43168807397377873 | No Hit |
TGTCTGAGGGTCGCT | 59541 | 0.4243262722037964 | No Hit |
AACCCGTAGATCCGAACTTGTG | 58889 | 0.4196797138746303 | No Hit |
TAACAGTCTACAGTCATGGCT | 54781 | 0.3904035457516026 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 53744 | 0.3830132374888032 | No Hit |
TTCACAGTGGCTAAGTTCTG | 51530 | 0.36723489371461054 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 50039 | 0.3566090985170851 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 49103 | 0.3499385791979142 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 49082 | 0.3497889201106252 | No Hit |
TAAAGGGAATTTGCGACTGTT | 48670 | 0.3468527513504773 | No Hit |
CCTTTCTGAGGGTCGCT | 46835 | 0.3337753977706925 | No Hit |
CCACGTTCCCGTGG | 44725 | 0.318738222809741 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 42989 | 0.3063664049271762 | No Hit |
TCCCTGAGACCCTTAACCTGT | 41082 | 0.292775934476686 | No Hit |
AACAGTCAACGCTGTCGGTGAG | 39885 | 0.28424536650120785 | No Hit |
ACCATCGACCGTTGACTGTACC | 39536 | 0.28175817500292727 | No Hit |
AAGCTGCCAGCTGAAGAACT | 39146 | 0.27897879195327274 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 36336 | 0.25895298074935164 | No Hit |
AACATTCAACGCTGTCGGTGG | 35753 | 0.25479815942127826 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 33652 | 0.23982512406916504 | No Hit |
AACATTCAACGCTGTCGGTGAGTT | 32968 | 0.2349505137974632 | No Hit |
AACATTCATTGCTGTCGGTGGGTT | 32810 | 0.23382450733119292 | No Hit |
TAGCAGCACGTAAATATTGGAG | 32533 | 0.2318504327036178 | No Hit |
AACAGTCAACGCTGTCGGTGAGT | 31439 | 0.2240539069181766 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 31349 | 0.2234125108297948 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 30870 | 0.21999885831496266 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 30781 | 0.2193645888497851 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 30154 | 0.21489619610072513 | No Hit |
TAAATCTAGAGAACCGAAAGTA | 30093 | 0.21446147208526636 | No Hit |
TCCAGCATCAGTGATTTTGTT | 29967 | 0.21356351756153183 | No Hit |
TACCCTGTAGAACCGAATGTGT | 29924 | 0.2132570727637494 | No Hit |
TGATGTAGTAGGTTGTATAGTT | 29572 | 0.21074850139585605 | No Hit |
AATATTCAACGCTGTCGGTGAG | 28636 | 0.20407798207668515 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 27533 | 0.19621731668240583 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 27458 | 0.19568281994208764 | No Hit |
TGAGATGAAGCACTGTAGCTC | 27454 | 0.19565431344927067 | No Hit |
AAGGTCCAACCTCACATGTCCT | 25853 | 0.1842445896992786 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 25113 | 0.17897088852813922 | No Hit |
TCCCTGAGACCCTTAACCTGTGG | 24865 | 0.1772034859734871 | No Hit |
GCATCGATGGTTCAGTGGTAGAATGCTC | 24782 | 0.17661197624753497 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 23947 | 0.17066124587199258 | No Hit |
TTCAAGTAATCCAGGATAGGC | 23492 | 0.1674186323140623 | No Hit |
ACCATCGACCGTTGACTGTGCC | 23129 | 0.1648316680909223 | No Hit |
CACCACGTTCCCGTGG | 23083 | 0.16450384342352717 | No Hit |
AATATTCAACGCTGTCGGTGAGT | 22928 | 0.1633992168268696 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 22455 | 0.16002832405126294 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 21460 | 0.15293733396304177 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 20625 | 0.14698660358749935 | No Hit |
ATCTACATCTGGCTACTGGGTCTC | 20289 | 0.14459205819087392 | No Hit |
ACCACGTTCCCGTGG | 20267 | 0.14443527248038057 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 19949 | 0.1421690063014315 | No Hit |
TTGCATAGTCACAAAAATGAGC | 19762 | 0.14083632776223817 | No Hit |
TACCCTGTAGAACCGAATTTGT | 19503 | 0.13899053235233938 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 19247 | 0.13716611681205335 | No Hit |
AAGCCCTTACCCCAAAAAGCAT | 19223 | 0.13699507785515153 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 19060 | 0.13583343827286 | No Hit |
ACCATTGACCGTTGACTGTACC | 19021 | 0.13555549996789457 | No Hit |
TAACAGTCTACAGCCATGGTCG | 18997 | 0.13538446101099275 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 18957 | 0.13509939608282306 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 18610 | 0.13262645783095095 | No Hit |
CTACTCCTGTCTGAGGGTCGCT | 18523 | 0.13200644161218186 | No Hit |
CATTATTACTTTTGGTACGCG | 18396 | 0.13110136046524307 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 18373 | 0.13093744813154548 | No Hit |
AACATTCAACGCTGTCGGTG | 17970 | 0.1280654189802358 | No Hit |
GAAGGATCATTA | 17660 | 0.12585616578692066 | No Hit |
TGTAAACATCCCCGACTGGAAGCT | 16480 | 0.11744675040591464 | No Hit |
CTTTTTGCGGTCTGGGCTTGC | 16359 | 0.1165844289982013 | No Hit |
TCCCTGAGACCCTAACTTGTG | 16276 | 0.1159929192722492 | No Hit |
AGCTACATCTGGCTACTGGGTCTCT | 16027 | 0.11421839009439283 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 15741 | 0.11218017585797951 | No Hit |
TACGCCTGTCTGAGGGTCGCT | 15728 | 0.11208752975632437 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 15522 | 0.11061944537625043 | No Hit |
AACATTCATTGCTGTCGCTGGGTT | 15038 | 0.1071701597453971 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 14784 | 0.10535999745151954 | No Hit |
TAATCTCTGCAGGCAACTGTGA | 14321 | 0.10206037090795532 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAACCCG | 135 | 0.0 | 2836.4995 | 23 |
TAACTGC | 110 | 0.0 | 2531.7517 | 23 |
AATAACC | 175 | 0.0 | 2387.08 | 23 |
TATCCCC | 530 | 0.0 | 2331.7192 | 23 |
GATTCCT | 425 | 0.0 | 2252.5144 | 23 |
TAACTAA | 105 | 0.0 | 1823.4639 | 23 |
CGACAAT | 10 | 0.0027007975 | 1740.5793 | 23 |
TCGGATA | 20 | 4.129248E-6 | 1740.5793 | 23 |
GGAAGAT | 10 | 0.0027007975 | 1740.5793 | 23 |
GGCTCGT | 130 | 0.0 | 1606.6886 | 23 |
CACGTGT | 50 | 2.7284841E-11 | 1392.4634 | 23 |
ATCACTA | 5 | 0.0044082543 | 1362.6619 | 22 |
CTCATGC | 5 | 0.0044082543 | 1362.6619 | 22 |
TTTAACT | 90 | 0.0 | 1353.7838 | 23 |
AATGCTC | 3125 | 0.0 | 1314.6963 | 22 |
ACAACCC | 605 | 0.0 | 1306.3535 | 22 |
ATAACTA | 980 | 0.0 | 1237.5194 | 22 |
TCTGACT | 2380 | 0.0 | 1235.9575 | 23 |
GATACCA | 15 | 0.0060756323 | 1160.3862 | 23 |
TCGTGCT | 15 | 0.0060756323 | 1160.3862 | 23 |