Basic Statistics
Measure | Value |
---|---|
Filename | nfu_brain_grz_5_JG23_1_ATCACG_L007_R1_001_TRIMMED_prinseq_good_VSNX.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10111076 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 957348 | 9.468309802042828 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 766304 | 7.578857087020214 | No Hit |
TCACAGTGAACCGGTCTCTTT | 467647 | 4.625096280554117 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 421993 | 4.1735716356993064 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 234922 | 2.3234124637180056 | No Hit |
CCTGTCTGAGGGTCGCT | 186417 | 1.8436910176523251 | No Hit |
AACATTCAACGCTGTCGGTGA | 176979 | 1.7503478363727065 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 130318 | 1.288863816274351 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 128604 | 1.2719121090574337 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 125704 | 1.243230690779102 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 124099 | 1.2273570092836805 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 116893 | 1.1560886299341435 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 91492 | 0.9048690762486603 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 85340 | 0.8440249089216617 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 80389 | 0.795058804819586 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 74863 | 0.7404058677830134 | No Hit |
AACATTCATTGCTGTCGGTGGG | 74487 | 0.7366871735510642 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 73027 | 0.7222475629695593 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 71445 | 0.7066013547915178 | No Hit |
CTGTCTGAGGGTCGCT | 69477 | 0.6871375509391878 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 67716 | 0.6697210069432769 | No Hit |
TCACAGTGAACCGGTCTCTT | 67049 | 0.6631242807392606 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 66061 | 0.65335281823616 | No Hit |
TTGCATAGTCACAAAAGTGATC | 65577 | 0.6485659884269488 | No Hit |
AACCCGTAGATCCGAACTTGTG | 65286 | 0.6456879564548818 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 60665 | 0.5999855999499955 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 59279 | 0.5862778600417997 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 54096 | 0.5350172424774574 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 53970 | 0.533771084303985 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 53476 | 0.5288853530524348 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 52627 | 0.5204886205978474 | No Hit |
TGTCTGAGGGTCGCT | 48843 | 0.48306431481674156 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 47468 | 0.4694653664951188 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 45742 | 0.45239497754739455 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 44923 | 0.4442949494198244 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 44613 | 0.441229004707313 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 43906 | 0.4342366727339405 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 41046 | 0.4059508602249652 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 38490 | 0.38067165156309773 | No Hit |
AAGCTGCCAGCTGAAGAACT | 37016 | 0.36609357896231814 | No Hit |
TAAAGGGAATTTGCGACTGTT | 35598 | 0.35206935443863735 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 35053 | 0.34667922583115784 | No Hit |
TTCACAGTGGCTAAGTTCTG | 33690 | 0.333198959240342 | No Hit |
TAACAGTCTACAGTCATGGCT | 33447 | 0.3307956541915025 | No Hit |
CCACGTTCCCGTGG | 30939 | 0.30599117245286256 | No Hit |
ACCATCGACCGTTGACTGTACC | 30615 | 0.3027867657210766 | No Hit |
CCTTTCTGAGGGTCGCT | 30228 | 0.2989592799025544 | No Hit |
TCCCTGAGACCCTTAACCTGT | 29845 | 0.29517135466096783 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 27223 | 0.2692393964796625 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 27144 | 0.2684580750851838 | No Hit |
TAGCAGCACGTAAATATTGGAG | 26828 | 0.2653327895072691 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 25733 | 0.2545030815711404 | No Hit |
ACCATCGACCGTTGACTGTGCC | 25217 | 0.24939976714644418 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 24976 | 0.24701624238607245 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 24265 | 0.23998434983576425 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 22975 | 0.22722606377402363 | No Hit |
ATCTACATCTGGCTACTGGGTCTC | 22815 | 0.22564364069659845 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 21643 | 0.21405239165445894 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 21389 | 0.21154029501904642 | No Hit |
AACATTCAACGCTGTCGGTGG | 20687 | 0.20459741376684343 | No Hit |
TGAGATGAAGCACTGTAGCTC | 20150 | 0.1992864063132351 | No Hit |
TCCAGCATCAGTGATTTTGTT | 19730 | 0.195132545734994 | No Hit |
AAGGTCCAACCTCACATGTCCT | 19546 | 0.193312759195955 | No Hit |
AACATTCAACGCTGTCGGTGAGTT | 18845 | 0.1863797680879859 | No Hit |
AACATTCATTGCTGTCGGTGGGTT | 18731 | 0.18525229164532045 | No Hit |
AGCTACATCTGGCTACTGGGTCTCT | 18721 | 0.18515339020298138 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 18702 | 0.18496547746253714 | No Hit |
TCCCTGAGACCCTTAACCTGTGG | 18553 | 0.1834918459716849 | No Hit |
CACCACGTTCCCGTGG | 18370 | 0.18168194957687986 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 18154 | 0.17954567842235586 | No Hit |
TGATGTAGTAGGTTGTATAGTT | 17657 | 0.17463027673810383 | No Hit |
TACCCTGTAGAACCGAATTTGT | 17267 | 0.17077312048687993 | No Hit |
TAAATCTAGAGAACCGAAAGTA | 17163 | 0.16974454548655354 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 16811 | 0.16626321471621813 | No Hit |
TTCAAGTAATCCAGGATAGGC | 16633 | 0.16450276904258263 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 16332 | 0.16152583562817646 | No Hit |
AATATTCAACGCTGTCGGTGAG | 16228 | 0.1604972606278501 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 16127 | 0.15949835606022544 | No Hit |
TTGCATAGTCACAAAAATGAGC | 15992 | 0.15816318658864792 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 15879 | 0.15704560029021639 | No Hit |
TGCTCAGTAGTCAGTGTAGATC | 15628 | 0.1545631740875056 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 15462 | 0.152921410144677 | No Hit |
AACAGTCAACGCTGTCGGTGAG | 15441 | 0.15271371711576492 | No Hit |
TTATGTAGTAGGTTGTATAGTT | 15404 | 0.15234778177911035 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 15141 | 0.14974667384559268 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 15135 | 0.14968733298018924 | No Hit |
TACCCTGTAGAACCGAATGTGT | 14765 | 0.1460279796136435 | No Hit |
TCCCTGAGACCCTAACTTGTG | 14091 | 0.13936202239998988 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 13163 | 0.13018396855092376 | No Hit |
AATATTCAACGCTGTCGGTGAGT | 13125 | 0.12980814307003527 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 12860 | 0.1271872548480498 | No Hit |
TACGCCTGTCTGAGGGTCGCT | 12630 | 0.12491252167425108 | No Hit |
CATTATTACTTTTGGTACGCG | 12586 | 0.12447735532795917 | No Hit |
GAAGGATCATTA | 12554 | 0.12416087071247413 | No Hit |
AACAGTCAACGCTGTCGGTGAGT | 12428 | 0.1229147125390018 | No Hit |
AAGCCCTTACCCCAAAAAGCAT | 12306 | 0.12170811494246507 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 12260 | 0.12125316830770533 | No Hit |
ACCACGTTCCCGTGG | 12116 | 0.11982898753802265 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 11978 | 0.11846414763374342 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 11880 | 0.1174949134988205 | No Hit |
AACATTCATTGCTGTCGCTGGGTT | 11849 | 0.11718831902756938 | No Hit |
ACCATTGACCGTTGACTGTACC | 11609 | 0.11481468441143158 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 11590 | 0.11462677167098734 | No Hit |
AACATTCATTGCTGTCGCTGGGT | 11519 | 0.11392457143037991 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 11431 | 0.11305423873779606 | No Hit |
TAACAGTCTACAGCCATGGTCG | 11024 | 0.10902895003459573 | No Hit |
TTTGGCAATGGTAGAACTCACA | 10882 | 0.10762454955338087 | No Hit |
CTTTTTGCGGTCTGGGCTTGC | 10783 | 0.10664542527422402 | No Hit |
TTAGGTAGTAGGTTGTATAGTT | 10658 | 0.1054091572449856 | No Hit |
TGTAAACATCCCCGACTGGAAGCT | 10587 | 0.10470695700437818 | No Hit |
TAGCAGCGCATCATGGTTTGAT | 10247 | 0.10134430796484963 | No Hit |
CAAGCTCGTATCTATAGGTATG | 10127 | 0.10015749065678074 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCAGTC | 5 | 6.284022E-4 | 3608.1812 | 23 |
GATTCGT | 5 | 6.284022E-4 | 3608.1812 | 23 |
CAACCCG | 160 | 0.0 | 3382.67 | 23 |
TAACTAA | 75 | 0.0 | 3127.0903 | 23 |
TAACTGC | 170 | 0.0 | 2759.1975 | 23 |
AATAACC | 180 | 0.0 | 2706.136 | 23 |
ACGCATA | 10 | 0.0025131456 | 1804.0906 | 23 |
GAGGGAT | 10 | 0.0025131456 | 1804.0906 | 23 |
CAACGGG | 5 | 0.002592598 | 1776.7405 | 22 |
ACACCCG | 5 | 0.002592598 | 1776.7405 | 22 |
AAGCAAC | 5 | 0.002592598 | 1776.7405 | 22 |
ACAACCC | 475 | 0.0 | 1720.6329 | 22 |
ATAACTA | 790 | 0.0 | 1698.0243 | 22 |
CCAACCC | 60 | 0.0 | 1480.6172 | 22 |
TAACACA | 25 | 7.2339717E-6 | 1443.2726 | 23 |
ATAAAAA | 40 | 0.0 | 1332.5554 | 22 |
TCTGACT | 1865 | 0.0 | 1218.8495 | 23 |
TTCTATA | 15 | 0.005653535 | 1202.727 | 23 |
AGCAACC | 15 | 0.005653535 | 1202.727 | 23 |
GGAGACA | 15 | 0.005653535 | 1202.727 | 23 |