Basic Statistics
Measure | Value |
---|---|
Filename | nfu_brain_mzm_27_JM66_ATGTCA_L001_R1_001_TRIMMED.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1897048 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-29 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 155268 | 8.1847164647389 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 131972 | 6.956703256849589 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 87718 | 4.623920955083899 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 65917 | 3.474714398370521 | No Hit |
TCACAGTGAACCGGTCTCTTT | 40596 | 2.139956395410132 | No Hit |
TCCCTGAGACCCTTAACCTGT | 36408 | 1.9191923451594266 | No Hit |
AACATTCAACGCTGTCGGTGA | 28679 | 1.5117698656017138 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 26883 | 1.4170964572325002 | No Hit |
AACCCGTAGATCCGAACTTGTG | 24308 | 1.2813592486853258 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 23808 | 1.2550025091616026 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 22446 | 1.1832067506989807 | No Hit |
TTCAAGTAATCAAGGATAGGCT | 19911 | 1.0495780813137041 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 18292 | 0.9642349587358885 | No Hit |
TCCAGCATCAGTGATTTTGTT | 17953 | 0.9463650893388043 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 17463 | 0.9205354846055556 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 16913 | 0.8915430711294602 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 14900 | 0.7854308378069506 | No Hit |
CCACGTTCCCGTGG | 14650 | 0.772252468045089 | No Hit |
AACATTCAACGATGTCGGTGAG | 13735 | 0.7240196347166756 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 12965 | 0.6834302558501419 | No Hit |
AACATTCATTGCTGTCGGTGGG | 12451 | 0.6563355276197544 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 11700 | 0.6167477048551223 | No Hit |
TAAAGCTAGAGAACCGAAAGTC | 10461 | 0.5514357043153362 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 10353 | 0.5457426485782121 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 10225 | 0.5389953232601389 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 10013 | 0.5278200657020803 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 9978 | 0.5259750939354196 | No Hit |
TCACAGTGAACCGGTCTCTT | 9973 | 0.5257115265401824 | No Hit |
AACCCGTAGATCCGAACTTGT | 9927 | 0.5232867065039999 | No Hit |
TAACAGTCTACAGTCATGGCT | 9752 | 0.5140618476706967 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 9146 | 0.48211747936794425 | No Hit |
TTCACAGTGGCTAAGTTCTG | 8908 | 0.46957167135465205 | No Hit |
TCCCTGAGACCCTAACTTGT | 8868 | 0.4674631321927542 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 8672 | 0.4571312902994547 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 8403 | 0.4429513644356916 | No Hit |
AACATTCAACGATGTCGGTGAGT | 7884 | 0.41559306881006697 | No Hit |
TTCAAGTAATCCAGGATAGGC | 7871 | 0.4149077935824502 | No Hit |
AAGCTGCCAGCTGAAGAACT | 7862 | 0.41443337227102317 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 7735 | 0.4077387604319975 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 7594 | 0.4003061598863076 | No Hit |
TCTTTGGTTATCTAGCTGTCT | 7529 | 0.3968797837482236 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 7433 | 0.39181928975966873 | No Hit |
TCTTTGGTTATCTAGCTGTCTGA | 7038 | 0.3709974655359274 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 6700 | 0.3531803096178905 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 6213 | 0.32750884532178415 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 6017 | 0.31717700342848465 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 5923 | 0.3122219363980247 | No Hit |
CCTGTCTGAGGGTCGCT | 5812 | 0.3063707402237582 | No Hit |
TAAAGGGAATTTGCGACTGTT | 5808 | 0.3061598863075684 | No Hit |
TGAGATGAAGCACTGTAGCT | 5548 | 0.29245438175523236 | No Hit |
TTGCATAGTCACAAAAGTGATC | 5481 | 0.28892257865905346 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 5424 | 0.28591791035334896 | No Hit |
TAAAGCTAGAGAACCGAAAGTAA | 5384 | 0.28380937119145117 | No Hit |
TCACAGTGAACAGGTCTCTTT | 5330 | 0.28096284332288907 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 5249 | 0.2766930515200459 | No Hit |
AACATTCAACGCTGTCGGTGG | 5232 | 0.2757969223762393 | No Hit |
TACCCTGTAGAACCGAATTTGT | 5116 | 0.2696821588067355 | No Hit |
AACCCGTAGATCCGAACTTGTGA | 4927 | 0.2597193112667681 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 4851 | 0.2557130868591622 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 4773 | 0.2516014354934614 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 4572 | 0.24100602620492473 | No Hit |
TCCCTGAGACCCTAACTTGTG | 4454 | 0.23478583567732603 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 4404 | 0.23215016172495373 | No Hit |
ACCATCGACCGTTGACTGTGCC | 4338 | 0.22867107210782228 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 4325 | 0.22798579688020543 | No Hit |
TCCCTGAGACCATTAACCTGT | 4295 | 0.22640439250878205 | No Hit |
AACATTCNACGCTGTCGGTGAG | 4205 | 0.22166017939451188 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 4168 | 0.21970978066975635 | No Hit |
TTGCATAGTCACAAAAGTGCTC | 4154 | 0.21897179196309213 | No Hit |
TAAAGCTAGAGAACCGAAAGTAT | 4132 | 0.2178120954240483 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 4064 | 0.21422757884882196 | No Hit |
TCCCTGAGACCCTTAACCTG | 3996 | 0.21064306227359558 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 3967 | 0.20911437138121966 | No Hit |
TTCAAGTNATCCAGGATAGGCT | 3696 | 0.1948290185593617 | No Hit |
TAAGGCACGCGGTGAATGCC | 3689 | 0.19446002420602956 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 3676 | 0.1937747489784128 | No Hit |
TGAGATGAAGCACTGTAGCTC | 3659 | 0.1928786198346062 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 3630 | 0.19134992894223024 | No Hit |
TACCCTGTAGATCCGGATTTGT | 3523 | 0.18570958668415347 | No Hit |
TCCCTGAGACCCTTAACCTGTGT | 3518 | 0.18544601928891627 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 3311 | 0.17453432912609487 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 3291 | 0.17348005954514592 | No Hit |
TCTTTGGTTATCTAGCTGTCTG | 3270 | 0.17237307648514957 | No Hit |
TAACGGAACCCATAATGCAGCTG | 3216 | 0.16952654861658745 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 3145 | 0.16578389160421877 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 3093 | 0.16304279069375155 | No Hit |
CCCTGAGACCCTTAACCTGTGC | 3082 | 0.16246294242422965 | No Hit |
TTCACCGTGGCTAAGTTCTGC | 3024 | 0.15940556063947775 | No Hit |
AACCCGTAGATACGAACTTGTG | 2916 | 0.15371250490235355 | No Hit |
AACATTCAACGCTGTCGGTGT | 2898 | 0.15276366227949953 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 2898 | 0.15276366227949953 | No Hit |
TGTGGTCGGCGTCC | 2832 | 0.14928457266236805 | No Hit |
GTACAGTACTGTGATAACTGA | 2770 | 0.14601633696142638 | No Hit |
TGAGGTAGTTGGTTGTATAGT | 2745 | 0.1446984999852402 | No Hit |
TCCCTGAGACCCTAACTTGTGC | 2717 | 0.14322252257191173 | No Hit |
AACATTCAACGATGTCGGTGA | 2712 | 0.14295895517667448 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 2706 | 0.14264267430238983 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 2669 | 0.1406922755776343 | No Hit |
TCCCTGAGACCATTAACCTGTG | 2669 | 0.1406922755776343 | No Hit |
TTCACCGTGGCTAAGTTCTG | 2650 | 0.13969071947573283 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 2635 | 0.13890001729002113 | No Hit |
ACCATCGACCGTTGACTGTGCCT | 2516 | 0.132627113283375 | No Hit |
TAACAGTCTACAGCCATGGTCG | 2487 | 0.13109842239099906 | No Hit |
TGAGGTAGTAGTTTGTATAGT | 2487 | 0.13109842239099906 | No Hit |
AACATTCAACGCTGTCGGTG | 2435 | 0.12835732148053186 | No Hit |
ACCGTGGCTTTAGATTGTTCCT | 2435 | 0.12835732148053186 | No Hit |
CCTTGGCTTTAGACTGCTTACT | 2410 | 0.1270394845043457 | No Hit |
AACCCGTAGATCCGAACTTG | 2395 | 0.126248782318634 | No Hit |
TCCCTGAGACCCTTAACCTGTGG | 2376 | 0.12524722621673254 | No Hit |
AACATTCNACGCTGTCGGTGAGT | 2363 | 0.12456195098911572 | No Hit |
CATTGCACTTGTCTCGGTCTGA | 2345 | 0.12361310836626169 | No Hit |
CCCTGCGACCCTTAACCTGTGA | 2276 | 0.11997587831198789 | No Hit |
TGAGGTAGTTGTTTGTACAGTT | 2239 | 0.11802547958723238 | No Hit |
TAACAGTCTACAGCCATGGTC | 2203 | 0.11612779434152432 | No Hit |
TGAGGTAGTAGTTTGTGC | 2185 | 0.11517895171867026 | No Hit |
CTGGACAACTCTTAGCGG | 2178 | 0.11480995736533814 | No Hit |
CACCACGTTCCCGTGG | 2176 | 0.11470453040724325 | No Hit |
TCACAGTGAACCGGTCTCT | 2141 | 0.11285955864058263 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 2121 | 0.11180528905963372 | No Hit |
TGAGGTAGTAGTTTGTGCTGTTT | 2117 | 0.11159443514344393 | No Hit |
TAAAGCTAGAGAACCGAAAGTCA | 2117 | 0.11159443514344393 | No Hit |
CCCTGAGACCCTTAACCTGTGG | 2092 | 0.11027659816725775 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 2075 | 0.10938046902345118 | No Hit |
TCGTGTCTTGTGTTGCAGCCAGT | 2070 | 0.10911690162821394 | No Hit |
TATGGCTTTTTATTCCTATCTG | 2032 | 0.10711378942441098 | No Hit |
AAGGTCCAACCTCACATGTCCT | 2002 | 0.10553238505298758 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 1991 | 0.10495253678346568 | No Hit |
TCTTTGGTTATCTAGCTGTCTGT | 1972 | 0.10395098068156419 | No Hit |
TGAGGTANTAGGTTGTATAGTT | 1936 | 0.10205329543585613 | No Hit |
AACATTCAACGCTGTCGGTGAT | 1901 | 0.1002083236691955 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATAACC | 15 | 1.1459633E-10 | 4628.496 | 23 |
ACCACCA | 5 | 3.792803E-4 | 4628.4956 | 23 |
CAACCCG | 5 | 3.792803E-4 | 4628.4956 | 23 |
TAAAAAA | 5 | 3.792803E-4 | 4628.4956 | 23 |
GTTTTTA | 5 | 3.792803E-4 | 4628.4956 | 23 |
GCTGAGC | 5 | 3.792803E-4 | 4628.4956 | 23 |
ACGATTT | 5 | 3.792803E-4 | 4628.4956 | 23 |
AAAACCA | 10 | 2.1498454E-7 | 4628.4956 | 23 |
GCACCTT | 5 | 3.792803E-4 | 4628.4956 | 23 |
AGCGCCT | 5 | 3.792803E-4 | 4628.4956 | 23 |
ACGAACC | 5 | 3.792803E-4 | 4628.4956 | 23 |
GGACTCG | 10 | 0.0015169063 | 2314.2478 | 23 |
GAAGTGG | 10 | 0.0015169063 | 2314.2478 | 23 |
TAACTAA | 10 | 0.0015169063 | 2314.2478 | 23 |
GCTGCCC | 10 | 0.0015169063 | 2314.2478 | 23 |
GTGACTA | 10 | 0.0015169063 | 2314.2478 | 23 |
GATTCCT | 10 | 0.0015169063 | 2314.2478 | 23 |
TCACTGA | 10 | 0.0015169063 | 2314.2478 | 23 |
ACGCGCT | 10 | 0.0015169063 | 2314.2478 | 23 |
TGAGCCA | 10 | 0.0015169063 | 2314.2478 | 23 |