Basic Statistics
Measure | Value |
---|---|
Filename | nfu_brain_mzm_32_JM31_1_GTGAAA_L006_R1_001_TRIMMED_prinseq_good_kbt3.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6885349 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 766516 | 11.132565684034317 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 358284 | 5.203570654152752 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 300486 | 4.364136080829018 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 229605 | 3.334689352711097 | No Hit |
AACCCGTAGATCCGAACTTGTG | 180326 | 2.6189812600639417 | No Hit |
AACCCGTAGATCCGAACTTGT | 97161 | 1.41112672720003 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 91203 | 1.3245951657642916 | No Hit |
TCCCTGAGACCCTTAACCTGT | 88859 | 1.2905518659983684 | No Hit |
TCACAGTGAACCGGTCTCTTT | 86523 | 1.2566247549688476 | No Hit |
AACATTCAACGCTGTCGGTGA | 82708 | 1.2012172512969206 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 70756 | 1.0276312791116327 | No Hit |
AACTCCAGTCACGTGAAAATCTCGTATGC | 63536 | 0.9227709445084047 | TruSeq Adapter, Index 19 (96% over 29bp) |
AACATTCAAGGCTGTCGGTGAG | 62420 | 0.9065626157802604 | No Hit |
AACATTCATTGCTGTCGGTGGG | 57752 | 0.8387664880894201 | No Hit |
TATGGCTTTTTATTCCTATCTG | 57461 | 0.8345401228027802 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 57017 | 0.8280916479324432 | No Hit |
TTGCATAGTCACAAAAGTGATC | 56626 | 0.8224129234407727 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 52949 | 0.769009675471788 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 50397 | 0.7319454685594006 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 50091 | 0.7275012493920061 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 48096 | 0.6985266832516405 | No Hit |
AACCCGTAGATCCGAACTTGTGA | 46640 | 0.6773803332263912 | No Hit |
TCCAGCATCAGTGATTTTGTT | 43258 | 0.6282615449122477 | No Hit |
TTCACAGTGGCTAAGTTCTG | 43159 | 0.6268237092992672 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 40131 | 0.5828462725709329 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 37945 | 0.5510977003489583 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 36516 | 0.5303434873090674 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 36179 | 0.5254490367881134 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 35922 | 0.5217164736311841 | No Hit |
TGAGATGAAGCACTGTAGCT | 35269 | 0.5122325680223326 | No Hit |
AACATTCAANGCTGTCGGTGAG | 33938 | 0.4929016670033719 | No Hit |
AACTCCAGTCACGTGAAAATCTCGTCTGC | 31959 | 0.46415947833581134 | RNA PCR Primer, Index 19 (96% over 29bp) |
AAGCTGCCAGCTGAAGAACTGT | 31304 | 0.45464652554285917 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 31246 | 0.4538041572039413 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 30912 | 0.44895327745913827 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 30041 | 0.4363032287833195 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 29524 | 0.42879453169330994 | No Hit |
TTCAAGTAAGCCAGGATAGGCT | 28962 | 0.42063227296103656 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 27432 | 0.39841117712406443 | No Hit |
TACCCTGTAGAACCGAATTTGT | 27238 | 0.39559360026630463 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 26678 | 0.38746038871813177 | No Hit |
TATGGCTTTTTATTCCTATCTGA | 26524 | 0.3852237555423843 | No Hit |
AAGCTGCCAGCTGAAGAACT | 26362 | 0.3828709336302343 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 25679 | 0.37295132025987354 | No Hit |
AACATTCAAGGCTGTCGGTGAGT | 24533 | 0.3563072837702199 | No Hit |
TTCAAGTAATCCAGGATAGGC | 23357 | 0.33922753951905704 | No Hit |
TCACAGTGAACCGGTCTCTT | 21533 | 0.3127365076192943 | No Hit |
TCCCTGAGACCCTAACTTGT | 21274 | 0.3089748972782643 | No Hit |
TAAAGGGAATTTGCGACTGTT | 21036 | 0.3055182823702909 | No Hit |
TGAGGTAGTGGGTTGTATAGTT | 19677 | 0.2857807207739216 | No Hit |
TACCCTGTAGATCCGGATTTGT | 19605 | 0.28473502214629937 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 19163 | 0.278315594460063 | No Hit |
TAAAGCTAGAGAACCGAAAGTAT | 19129 | 0.2778217923303525 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 18995 | 0.27587563099561113 | No Hit |
TAAAGCTAGAGAACCGAAAGTAA | 18899 | 0.2744813661587815 | No Hit |
AACCCGTAGATCCGAACTTG | 18896 | 0.2744377953826306 | No Hit |
AACATTCAAAGCTGTCGGTGAG | 18774 | 0.27266591715249294 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 18585 | 0.26992095825498463 | No Hit |
TAAGGCACGCGGTGAATGCC | 18439 | 0.2678005138156395 | No Hit |
TAACAGTCTACAGTCATGGCT | 17788 | 0.25834565539088866 | No Hit |
TCCCTGAGACCCTTAACCTG | 17531 | 0.2546130922339594 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 16980 | 0.24661059301423938 | No Hit |
TGAGATGAAGCACTGTAGCTC | 16791 | 0.24386563411673107 | No Hit |
CCTTGGCTTTAGACTGCTTACT | 16231 | 0.23573242256855828 | No Hit |
TCCCTGAGACCCTAACTTGTG | 15915 | 0.23114296748066077 | No Hit |
TTCAAGTAANCCAGGATAGGCT | 15832 | 0.22993750934048512 | No Hit |
CCACGTTCCCGTGG | 15713 | 0.2282092018864984 | No Hit |
AACATTCAACGCTGTCGGTGG | 15604 | 0.2266261303530148 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 15411 | 0.22382307708730523 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 15062 | 0.21875434346174755 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 14130 | 0.20521835567085997 | No Hit |
AACCCGTAGGTCCGAACTTGTG | 13945 | 0.2025314911415529 | No Hit |
TACCCTGTAGAACCGAATGTGT | 13337 | 0.19370114717496528 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 13186 | 0.19150808477536868 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 13100 | 0.19025905585904215 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 13009 | 0.18893740898246406 | No Hit |
ACCATCGACCGTTGACTGTGCCT | 12469 | 0.18109466927529744 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 12379 | 0.17978754599076968 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 12177 | 0.17685378039660735 | No Hit |
TCCCTGAGACCCTAACTTGTGAA | 12027 | 0.17467524158906106 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 11928 | 0.1732374059760805 | No Hit |
TGAGGTAGTNGGTTGTATAGTT | 11702 | 0.16995507417271077 | No Hit |
ACCATCGACCGTTGACTGTGCC | 11684 | 0.1696936495158052 | No Hit |
ACCTTGGCTCTAGACTGCTTACT | 11272 | 0.1637099295910781 | No Hit |
TACCCTGTAGAACCGAATTTGC | 11163 | 0.16212685805759447 | No Hit |
CTGGACAACTCTTAGCGG | 10764 | 0.15633194482952134 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 10594 | 0.15386293418096889 | No Hit |
TGTAAACATCCCCGACTGGA | 10517 | 0.15274461759309516 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 10338 | 0.1501448946160899 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 10289 | 0.1494332386056248 | No Hit |
AACCCGTAGATCCGAACTTGTGT | 10126 | 0.1470658931014245 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 10108 | 0.14680446844451892 | No Hit |
TGCTCAGTAGTCAGTGTAGATCC | 9739 | 0.1414452629779551 | No Hit |
TGCTCAGTAGTCAGTGTAGATC | 9615 | 0.1396443375637168 | No Hit |
CATTATTACTTTTGGTACGCG | 9588 | 0.13925220057835846 | No Hit |
TTCACAGTGGTTAAGTTCTG | 9587 | 0.13923767698630818 | No Hit |
CATTGCACTTGTCTCGGTCTGA | 9387 | 0.13633295857624647 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 9385 | 0.13630391139214584 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 9284 | 0.1348370285950647 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 9213 | 0.1338058535594928 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 9190 | 0.13347181094233568 | No Hit |
TCTTTGGTTATCTAGCTGTA | 9110 | 0.132309923578311 | No Hit |
TCCCTGAGACCCTTAACCTGTGT | 9108 | 0.13228087639421038 | No Hit |
TGGACAACTCTTAGCGG | 9018 | 0.1309737531096826 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 8949 | 0.1299716252582113 | No Hit |
TCCCTGAGACCCTTAACCTGTGG | 8939 | 0.1298263893377082 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 8927 | 0.12965210623310452 | No Hit |
TTCACCGTGGCTAAGTTCTG | 8731 | 0.12680548219124405 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 8686 | 0.12615192054898017 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 8645 | 0.12555645327491752 | No Hit |
TGAGGTAGTTGGTTGTATAGT | 8557 | 0.12427837717449036 | No Hit |
ACTGGACAACTCTTAGCGG | 8513 | 0.12363933912427677 | No Hit |
AACATTCAACGCTGTCGGTGT | 8447 | 0.12268078204895642 | No Hit |
TTCAAGTAAACCAGGATAGGCT | 8438 | 0.12255006972050364 | No Hit |
AACCCGTAGATCCGAACTTGTGG | 8330 | 0.12098152177907032 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 8191 | 0.11896274248407743 | No Hit |
AACCCGTAGNTCCGAACTTGTG | 7956 | 0.11554969835225493 | No Hit |
AACATTCAATGCTGTCGGTGAG | 7920 | 0.1150268490384438 | No Hit |
TTCACCGTGGCTAAGTTCTGC | 7781 | 0.11300806974345091 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 7557 | 0.10975478512418178 | No Hit |
TATTGCACTCGTCCCGGCCT | 7494 | 0.10883979882501235 | No Hit |
ACCATCGACCGTTGACTGTACC | 7403 | 0.10751815194843428 | No Hit |
TAACAGTCTACAGCCATGGTCG | 7373 | 0.10708244418692502 | No Hit |
AACATTCAAAGCTGTCGGTGAGT | 7338 | 0.10657411846516421 | No Hit |
AACATTCAACGCTGTCGGTG | 7325 | 0.10638531176851021 | No Hit |
TACGACCTCAGATCAGACGAGA | 7243 | 0.10519437722038491 | No Hit |
AACCCGTAGGTCCGAACTTGT | 7166 | 0.10407606063251114 | No Hit |
TGTGGTCGGCGTCC | 7149 | 0.10382915956765591 | No Hit |
AACATTCATTGCTGTCGGTGGA | 6965 | 0.10115681863039913 | No Hit |
TAAAGCTAGGGAACCGAAAGTA | 6903 | 0.10025635592328 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATTCCG | 10 | 6.390577E-5 | 698.48114 | 23 |
CGTCTGC | 4410 | 0.0 | 696.1054 | 23 |
CGTATGC | 8860 | 0.0 | 682.31995 | 23 |
TAACTGC | 45 | 0.0 | 620.87213 | 23 |
ATAACAC | 10 | 9.7149066E-5 | 607.42633 | 22 |
TGTAATT | 10 | 9.7149066E-5 | 607.42633 | 22 |
TCGTCTG | 4480 | 0.0 | 598.6132 | 22 |
TCGTATG | 8935 | 0.0 | 590.77057 | 22 |
ATCACTA | 130 | 0.0 | 584.0638 | 22 |
GTATGCC | 205 | 0.0 | 562.1922 | 23 |
GATACCA | 10 | 1.2327424E-4 | 561.04224 | 21 |
ATACCTG | 10 | 1.2327424E-4 | 561.04224 | 21 |
AGGCTTC | 15 | 5.548518E-7 | 561.0422 | 21 |
ATAACTA | 460 | 0.0 | 554.6066 | 22 |
CTCGTCT | 4480 | 0.0 | 551.6498 | 21 |
CGGATGC | 160 | 0.0 | 545.6884 | 23 |
CTCGTAT | 9230 | 0.0 | 530.9538 | 21 |
GATCACT | 300 | 0.0 | 523.6394 | 21 |
GGGACAC | 10 | 1.5662212E-4 | 517.9786 | 20 |
CCTGCTT | 10 | 1.5662212E-4 | 517.9786 | 20 |