Basic Statistics
Measure | Value |
---|---|
Filename | nfu_brain_mzm_32_JM77_1_GTTTCG_L008_R1_001_TRIMMED_prinseq_good_TTzF.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6218651 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 610883 | 9.823400605694065 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 402271 | 6.468782377399858 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 345950 | 5.563103637750374 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 207386 | 3.334903341576815 | No Hit |
TCACAGTGAACCGGTCTCTTT | 131122 | 2.1085280392805448 | No Hit |
AACATTCAACGCTGTCGGTGA | 116574 | 1.8745866265850908 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 77002 | 1.2382428279059237 | No Hit |
TATTGCACTCGTCCCGGCCTCC | 63868 | 1.0270394656333022 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 58157 | 0.9352028277515493 | No Hit |
TCCCTGAGACCCTTAACCTGT | 57944 | 0.9317776475959174 | No Hit |
TAAAGCTAGAGAACCGAAAGTA | 53640 | 0.8625664955309439 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 53190 | 0.8553301994274963 | No Hit |
AACCCGTAGATCCGAACTTGTG | 53049 | 0.8530628266484162 | No Hit |
TAAAGCTAGAGAACCGAAAGT | 50653 | 0.8145335700620602 | No Hit |
TCCAGCATCAGTGATTTTGTT | 50336 | 0.8094360014736315 | No Hit |
TCTTTGGTTATCTAGCTGTAT | 49047 | 0.7887080333017562 | No Hit |
AACATTCATTGCTGTCGGTGGG | 48838 | 0.7853471757781552 | No Hit |
TCTTTGGTTATCTAGCTGTATGA | 48563 | 0.7809249948260483 | No Hit |
TTAAAGGGAATTTGCGACTGTT | 47022 | 0.7561447008362424 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 46734 | 0.751513471330036 | No Hit |
AACTCCAGTCACGTTTCGATCTCGTATGC | 46359 | 0.7454832245771631 | TruSeq Adapter, Index 21 (96% over 29bp) |
AACANTCAACGCTGTCGGTGAG | 46020 | 0.740031881512566 | No Hit |
AACAGTCAACGCTGTCGGTGAG | 45760 | 0.7358509104305742 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 44299 | 0.7123570690813812 | No Hit |
CCACGTTCCCGTGG | 37486 | 0.6027995460751857 | No Hit |
TCACAGTGAACCGGTCTCTT | 32318 | 0.519694705491593 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 30572 | 0.4916178766102166 | No Hit |
TTCANGTAATCCAGGATAGGCT | 30078 | 0.483674031554432 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 29848 | 0.4799754802126699 | No Hit |
TTCAGGTAATCCAGGATAGGCT | 29660 | 0.47695231650722963 | No Hit |
TAAAGCTAGAGAACCGAAAGTC | 28545 | 0.4590223828286874 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 27949 | 0.4494383106561214 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 27519 | 0.44252362771282705 | No Hit |
TCACAGTGAACCGGTCTCTTTT | 27470 | 0.4417356754704517 | No Hit |
TCTTTGGTTATCTAGCTGTATG | 26318 | 0.4232107574456261 | No Hit |
AACANTCAACGCTGTCGGTGAGT | 26059 | 0.4190458670216418 | No Hit |
AACAGTCAACGCTGTCGGTGAGT | 25428 | 0.40889897181880763 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 25348 | 0.4076125191781948 | No Hit |
TTCAAGTAATCCAGGATAGGC | 24935 | 0.40097120742103065 | No Hit |
ACCTTGGCTTTAGACTGCTTACT | 24116 | 0.3878011485127562 | No Hit |
CACTCCAGTCACGTTTCGATCTCGTATGC | 23555 | 0.3787798993704583 | RNA PCR Primer, Index 21 (96% over 29bp) |
TTCACAGTGGCTAAGTTCTGC | 23097 | 0.37141495800294955 | No Hit |
TTGCATAGTCACAAAAGTGATC | 22750 | 0.36583496967429113 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 22416 | 0.36046402989973225 | No Hit |
AAGCTGCCAGCTGAAGAACT | 22281 | 0.35829314106869803 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 21404 | 0.3441904039959792 | No Hit |
TAAAGGGAATTTGCGACTGTT | 20864 | 0.33550684867184216 | No Hit |
TAACAGTCTACAGTCATGGCT | 20071 | 0.3227548868717669 | No Hit |
TTCACAGTGGCTAAGTTCTG | 19073 | 0.3067063901801211 | No Hit |
CCTGTCTGAGGGTCGCT | 18900 | 0.30392443634479566 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 18684 | 0.30045101421514087 | No Hit |
CCCTGAGACCCTTAACCTGTGA | 17901 | 0.2878598589951422 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 16134 | 0.25944533629560496 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 15753 | 0.25331860559468605 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 14900 | 0.2396018043141511 | No Hit |
TGAGNTAGTAGGTTGTATAGTT | 14775 | 0.23759172206319346 | No Hit |
TGAGATGAAGCACTGTAGCT | 14455 | 0.2324459115007419 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 14256 | 0.2292458605572173 | No Hit |
TCTTTGGTTATCTAGCTGTATGT | 14032 | 0.22564379316350122 | No Hit |
TAAGGCACGCGGTGAATGCC | 13874 | 0.22310304919829077 | No Hit |
TCCCTGAGACCCTAACTTGTG | 13672 | 0.21985475628074322 | No Hit |
AGCTGGTGTTGTGAATCAGGCCG | 13572 | 0.21824669047997708 | No Hit |
ACCATCGACCGTTGACTGTGCC | 13202 | 0.21229684701714246 | No Hit |
TGAGGTAGTAGGTTGTGTGGTT | 12876 | 0.20705455250664492 | No Hit |
TGAGGTAGTTGGTTGTATTGTT | 12788 | 0.20563945460197072 | No Hit |
TTCACCGTGGCTAAGTTCTGC | 12670 | 0.20374193695706674 | No Hit |
AAGCTGCCAGTTGAAGAGCTGT | 12575 | 0.2022142744463389 | No Hit |
TCCCTGAGACCCTAACTTGTGC | 12562 | 0.20200522589223932 | No Hit |
ACCGTGGCTTTAGATTGTTACT | 12552 | 0.2018444193121627 | No Hit |
AACATTCAACGCTGTCGGTGG | 12064 | 0.1939970582044241 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 11780 | 0.18943015133024832 | No Hit |
AGAATAATGCCAGCAGTCGGTC | 11616 | 0.18679292341699189 | No Hit |
AACCCGTAGATCCGAACTTGT | 11551 | 0.1857476806464939 | No Hit |
AACAATCAACGCTGTCGGTGAG | 11539 | 0.18555471275040197 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 11196 | 0.18003904705377421 | No Hit |
TTCACCGTGGCTAAGTTCTG | 10709 | 0.17220776660404322 | No Hit |
CCTTGGCTTTAGACTGCTTACT | 10435 | 0.16780166630994406 | No Hit |
AACATTCAACGCTGTCGGTGT | 10412 | 0.16743181117576786 | No Hit |
TGAGATGAAGCACTGTAGCTC | 10393 | 0.1671262786736223 | No Hit |
TAAAGCTAGAGAACCGAAAGTAA | 10252 | 0.16485890589454208 | No Hit |
TCCCTGAGACCCTAACTTGT | 10015 | 0.1610477899467264 | No Hit |
TGAGGTAGTAGTTTGTGCTGTTT | 9785 | 0.15734923860496433 | No Hit |
TCACNGTGAACCGGTCTCTTT | 9784 | 0.15733315794695665 | No Hit |
TCACGGTGAACCGGTCTCTTT | 9573 | 0.15394013910734017 | No Hit |
CCCTGCGACCCTTAACCTGTGA | 9422 | 0.15151195974818332 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 9381 | 0.15085265276986923 | No Hit |
CCCTGAGACCCTTAACCTGTGC | 9300 | 0.14955011947124866 | No Hit |
AACATTCAACGCTGTCGGTG | 9220 | 0.14826366683063577 | No Hit |
AGCTACATCTGGCTACTGGGTCT | 9202 | 0.14797421498649788 | No Hit |
AGCTACATTGTCTGCTGGGTTT | 9193 | 0.14782948906442892 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 9117 | 0.14660735905584668 | No Hit |
ACCATCGACCGTTGACTGTACC | 9097 | 0.14628574589569346 | No Hit |
ACCATCGACCGTTGACTGTGCCT | 9042 | 0.1454013097052721 | No Hit |
TGAGGTAGTAGTTTGTGC | 8738 | 0.1405127896709431 | No Hit |
TACCCTGTAGAACCGAATTTGT | 8700 | 0.139901724666652 | No Hit |
CTTTGGTTATCTAGCTGTATGA | 8690 | 0.13974091808657538 | No Hit |
AACAGTCAACGCTGTCGGTGA | 8621 | 0.13863135268404675 | No Hit |
CACCACGTTCCCGTGG | 8604 | 0.1383579814979165 | No Hit |
TCCCTGAGACCCTTAACCTG | 8005 | 0.12872566735132748 | No Hit |
AGCAGCATTGTACAGGGCTATGA | 7986 | 0.1284201348491819 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 7811 | 0.12560601969784121 | No Hit |
TGAGGTAGTTGGTTGTATAGT | 7687 | 0.12361201810489125 | No Hit |
TAAAGCTAGAGAACCGAAAGTAT | 7660 | 0.12317784033868438 | No Hit |
TGAGGTAGTAGTTTGTGCTGT | 7406 | 0.11909335320473846 | No Hit |
TATTGCACTCGTCCCGGCCT | 7364 | 0.11841796556841669 | No Hit |
TCACAGTGAACCGGTCTCT | 7210 | 0.11594154423523687 | No Hit |
TGAGGTAGTTGTTTGTACAGTT | 6964 | 0.11198570236535223 | No Hit |
TGAGGTAGTAGTTTGTATAGT | 6884 | 0.11069924972473934 | No Hit |
GTACAGTACTGTGATAACTGA | 6802 | 0.10938063576811112 | No Hit |
AACCCGTAGATCCGAACTTG | 6776 | 0.10896253865991193 | No Hit |
TCCCTGAGACCCTTAACCTGTGT | 6748 | 0.10851228023569742 | No Hit |
TAGCAGCACGTAAATATTGGAG | 6732 | 0.10825498970757484 | No Hit |
AACCCGTAGATCCGAACTTGTGA | 6726 | 0.10815850575952887 | No Hit |
CAGGCTGGTTAGATGGTTGTCT | 6666 | 0.1071936662790692 | No Hit |
AACAATCAACGCTGTCGGTGAGT | 6502 | 0.10455643836581277 | No Hit |
TCGTGTCTTGTGTTGCAGCCAGT | 6491 | 0.1043795511277285 | No Hit |
AACATTCAACGCTGTCGGTGAT | 6461 | 0.10389713138749866 | No Hit |
AGCTACATTGTCTGCTGGGTTTC | 6395 | 0.10283580795899304 | No Hit |
AAGGTCCAACCTCACATGTCCT | 6378 | 0.10256243677286278 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 6361 | 0.10228906558673255 | No Hit |
AGAATCATGCCAGCAGTCGGTC | 6336 | 0.10188704913654102 | No Hit |
TATTGCACTCGTCCCGGCCTC | 6274 | 0.10089004834006603 | No Hit |
AACATTCATTGCTGTCGGTGGGTT | 6246 | 0.10043978991585152 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGCA | 5 | 0.009689517 | 918.9315 | 23 |
ACACAAC | 5 | 0.009689517 | 918.9315 | 23 |
GCACGCC | 5 | 0.009689517 | 918.9315 | 23 |
CGTTACT | 5 | 0.009689517 | 918.9315 | 23 |
GCACACT | 5 | 0.009689517 | 918.9315 | 23 |
CTAAAAT | 5 | 0.009689517 | 918.9315 | 23 |
ACATAGC | 5 | 0.009689517 | 918.9315 | 23 |
TGAGCCT | 5 | 0.009689517 | 918.9315 | 23 |
CCCATCT | 5 | 0.009689517 | 918.9315 | 23 |
CGTATGC | 7590 | 0.0 | 905.61365 | 23 |
CAACCCG | 40 | 0.0 | 804.06506 | 23 |
TCACTAA | 25 | 6.4574124E-10 | 735.14514 | 23 |
TAACTAA | 25 | 6.4574124E-10 | 735.14514 | 23 |
CTAAACA | 20 | 7.9671736E-10 | 704.88324 | 22 |
TACTAAC | 20 | 7.9671736E-10 | 704.88324 | 22 |
TGGTATG | 10 | 6.217392E-5 | 704.88324 | 22 |
CTCAAAA | 15 | 2.2273889E-7 | 704.8832 | 22 |
TCGTATG | 7635 | 0.0 | 691.958 | 22 |
ATCACTA | 155 | 0.0 | 682.14496 | 22 |
ATCACTG | 140 | 0.0 | 654.5344 | 22 |