Basic Statistics
Measure | Value |
---|---|
Filename | nfu_skin_grz_12_JG14_5_GTGGCC_L004_R1_001_TRIMMED_prinseq_good_yoFr.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13316531 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATGACCTATGAATTGACAGCC | 1605677 | 12.057772403338376 | No Hit |
ATGACCTATGAATTGACAGCCA | 941501 | 7.070167147885586 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 718935 | 5.398815952893438 | No Hit |
AACATTCAACGCTGTCGGTGAG | 570481 | 4.28400609738377 | No Hit |
TACCCTGTAGAACCGAATTTGT | 451607 | 3.3913261644492847 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 391971 | 2.9434918147977127 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 294416 | 2.210906128630647 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 286216 | 2.1493285300803944 | No Hit |
TACCCTGTAGAACCGAATTTGC | 229560 | 1.7238723808775724 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 216455 | 1.625460865145735 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 202306 | 1.5192094697935972 | No Hit |
AACAGTAAGAGTTTATGTGCTG | 185277 | 1.3913308203164922 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 176307 | 1.3239709350731057 | No Hit |
TCCTTCATTCCACCGGAGTCTG | 162719 | 1.2219323485973936 | No Hit |
TTCACAGTGGTTAAGTTCTG | 136806 | 1.0273396277153561 | No Hit |
TTGGTCCCCTTCAACCAGCTGT | 136514 | 1.0251468644499082 | No Hit |
TGAGATGAAGCACTGTAGCTC | 124008 | 0.9312335171975343 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 122530 | 0.9201345305320132 | No Hit |
CCTGTCTGAGGGTCGCT | 109626 | 0.8232324169109808 | No Hit |
ACCCTGTAGAACCGAATTTGCG | 91356 | 0.6860345235557218 | No Hit |
TTCACAGTGGCTAAGTTCTG | 86326 | 0.648261923469408 | No Hit |
AACATTCAACGCTGTCGGTGA | 84820 | 0.6369526718332275 | No Hit |
TGAGATGAAGCACTGTAGCT | 75861 | 0.569675390685457 | No Hit |
TTTGGTCCCCTTCAACCAGCTGT | 75263 | 0.5651847316692313 | No Hit |
ATGACCTATGAATTGACAGCCT | 72284 | 0.5428140406837186 | No Hit |
ACAGTAGTCTGCACATTGGTT | 68199 | 0.5121378833571597 | No Hit |
TCCTTCATTCCACCGGAGTCTGT | 66357 | 0.49830545207306615 | No Hit |
TAACGGAACCCATAATGCAGCTG | 62323 | 0.4680122773716368 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 62101 | 0.46634517653283725 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 52373 | 0.3932931181551712 | No Hit |
AAGCTGCCAGCTGAAGAACT | 52329 | 0.3929627017727064 | No Hit |
ATGACCTATGAATTGACAGCCAT | 49610 | 0.37254447122903106 | No Hit |
TACCCTGTAGAACCGAATGTGT | 47817 | 0.3590800036435916 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 46513 | 0.34928766358145374 | No Hit |
ATTACCTATGAATTGACAGCC | 46408 | 0.348499169941481 | No Hit |
TTCAAGTAATCCAGGATAGGC | 44338 | 0.33295458103916103 | No Hit |
ATGACCTATGAATTGACAGC | 43277 | 0.32498704054381733 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 40368 | 0.3031420119849531 | No Hit |
TACCCTGTAGATCCGGATTTGT | 38773 | 0.2911644181206051 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 37397 | 0.28083139670534313 | No Hit |
AACTCCAGTCACGTGGCCATCTCGTATGC | 36897 | 0.27707666508642526 | TruSeq Adapter, Index 20 (96% over 29bp) |
TTCACAGTGGTTAAGTTCTGCC | 33987 | 0.2552241270643233 | No Hit |
TGTAACAGCAACTCCATGTGGA | 33378 | 0.2506508639524813 | No Hit |
TTAGGTAGTAGGTTGTATAGTT | 33058 | 0.24824783571637388 | No Hit |
TTCACAGTGGCTAAGTTCAGT | 32207 | 0.24185728250097566 | No Hit |
ACCCTGTAGAACCGAATTTGTG | 30324 | 0.22771696322413096 | No Hit |
TACCCTGTAGAACCGAATTTG | 29579 | 0.22212241311194333 | No Hit |
TTAGATGAAGCACTGTAGCTC | 29014 | 0.21787956638256614 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 28857 | 0.21670058065422593 | No Hit |
TTAGATGAAGCACTGTAGCTCT | 28830 | 0.21649782514680435 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 28585 | 0.21465800665353463 | No Hit |
TATGTGCCCTTGGACTACATCG | 28244 | 0.21209727968943262 | No Hit |
ATGAACTATGAATTGACAGCC | 28124 | 0.21119614410089232 | No Hit |
ATTACCTATGAATTGACAGCCA | 27603 | 0.20728371375397991 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 25600 | 0.19224225888859495 | No Hit |
AACATTAAGAGTTTATGTGCTG | 24640 | 0.18503317418027262 | No Hit |
TTTGGTCCCCTTCAACCAGCTG | 24441 | 0.1835387909959433 | No Hit |
TTCACAGTGGTTAAGTTCTGC | 23716 | 0.1780944301485124 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 23713 | 0.1780719017587989 | No Hit |
TCCTTCATTCCACCGGAGTCT | 23459 | 0.17616449809638862 | No Hit |
AACATTCATTGCTGTCGGTGGG | 23277 | 0.1747977757871025 | No Hit |
TTCACAGTGGTTAAGTTCTGCCT | 23274 | 0.174775247397389 | No Hit |
CATTGCACTTGTCTCGGTCTGA | 22791 | 0.17114817665351434 | No Hit |
CTGTCTGAGGGTCGCT | 22260 | 0.16716065167422356 | No Hit |
TTCCAGTGATGACAGCCTATAATCTGACT | 22164 | 0.16643974320339133 | No Hit |
TTCACGTAATCCAGGATAGGCT | 21984 | 0.1650880398205809 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 21270 | 0.15972628306876618 | No Hit |
ACAGTAGTCTGCACATTGGTTA | 20936 | 0.15721812234732904 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 20559 | 0.15438705470666497 | No Hit |
CATTATTACTTTTGGTACGCG | 20181 | 0.15154847760276308 | No Hit |
ACCCTGTAGAACCGAATTTGC | 19418 | 0.1458187571522944 | No Hit |
TCCAGCATCAGTGATTTTGTT | 18626 | 0.1398712622679285 | No Hit |
TTCAAGTAATCCAGGATGGGCT | 18484 | 0.13880491848815582 | No Hit |
ACCCTGTAGAACCGAATTTGT | 18179 | 0.1365145322006159 | No Hit |
TTAGATGAAGCACTGTAGCT | 17734 | 0.133172821059779 | No Hit |
TACAGTAGTCTGCACATTGGTT | 17693 | 0.13286493306702776 | No Hit |
AACCCGTAGATCCGAACTTGTG | 17614 | 0.13227168547123871 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 17129 | 0.1286295958008884 | No Hit |
TACCCTGTAGAACCGAATTTGTG | 16999 | 0.12765336557996973 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 16951 | 0.12729291134455362 | No Hit |
TATTGCACTTGTCCCGGCCTGTT | 16647 | 0.12501003452025156 | No Hit |
TTCAGTCATTGTTTCTGGTTGT | 16429 | 0.12337297153440337 | No Hit |
CACCACGTTCCCGTGG | 16398 | 0.12314017817403047 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 16179 | 0.12149560572494442 | No Hit |
AGGACCTATGAATTGACAGCC | 16176 | 0.12147307733523093 | No Hit |
TTCACAGTGGCTAAGTTCTGCT | 16104 | 0.12093239598210674 | No Hit |
ATGAACTATGAATTGACAGCCA | 15938 | 0.11968582508462602 | No Hit |
ATAACCTATGAATTGACAGCC | 15663 | 0.11762072269422119 | No Hit |
TGGACGGAGAACTGATAAGGGC | 15141 | 0.11370078288407094 | No Hit |
TGAGAACTGAATTCCATAGATGG | 14978 | 0.11247674037630372 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 14516 | 0.10900736836042359 | No Hit |
TTTAAGTAATCCAGGATAGGCT | 14310 | 0.10746041893342943 | No Hit |
TCCAGTGATGACAGCCTATAATCTGACT | 14247 | 0.10698732274944578 | No Hit |
ACCCTGTAGAACCGAATTTGTGT | 13889 | 0.10429893491030058 | No Hit |
CCACGTTCCCGTGG | 13547 | 0.10173069848296076 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATTC | 10 | 3.5225803E-6 | 1835.9355 | 23 |
GCGACGC | 5 | 0.002428439 | 1835.9355 | 23 |
TAGGTAC | 5 | 0.002428439 | 1835.9355 | 23 |
TCATGCG | 5 | 0.002428439 | 1835.9355 | 23 |
ATCGCCT | 5 | 0.002428439 | 1835.9355 | 23 |
CGTATGC | 3785 | 0.0 | 1809.2576 | 23 |
TAACTAA | 40 | 0.0 | 1606.4436 | 23 |
AATAACC | 110 | 0.0 | 1502.1292 | 23 |
TAACTGC | 200 | 0.0 | 1422.85 | 23 |
CAACCCG | 105 | 0.0 | 1398.808 | 23 |
AAATAGC | 125 | 0.0 | 1248.4362 | 23 |
GCACGCA | 5 | 0.0063630436 | 1134.1648 | 22 |
TACGGGA | 5 | 0.0063630436 | 1134.1648 | 22 |
CCGAGAT | 5 | 0.0063630436 | 1134.1648 | 22 |
TTGCCGC | 5 | 0.0063630436 | 1134.1648 | 22 |
AATACTC | 10 | 1.4941821E-5 | 1134.1648 | 22 |
ACGACAT | 5 | 0.0063630436 | 1134.1648 | 22 |
GATTCCT | 590 | 0.0 | 1104.6731 | 23 |
TCGTATG | 3935 | 0.0 | 1102.4601 | 22 |
GCTGAGC | 185 | 0.0 | 1091.6373 | 23 |