Basic Statistics
Measure | Value |
---|---|
Filename | nfu_skin_mzm_20_JM88_5_CTATAC_L004_R1_001_TRIMMED_prinseq_good_C_Qq.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8926381 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTCAAGTAATCCAGGATAGGCT | 636259 | 7.12784946105258 | No Hit |
AACATTCAACGCTGTCGGTGAG | 620125 | 6.947104319208424 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 524231 | 5.872827969140014 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 404207 | 4.528229301438063 | No Hit |
TACCCTGTAGAACCGAATTTGT | 256201 | 2.8701553294666673 | No Hit |
TCCTTCATTCCACCGGAGTCTG | 247554 | 2.773285164502837 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 216402 | 2.424297147970717 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 209630 | 2.3484321361590994 | No Hit |
TACCCTGTAGAACCGAATTTGC | 164581 | 1.8437595258369546 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 132828 | 1.4880386575477789 | No Hit |
AACAGTAAGAGTTTATGTGCTG | 130847 | 1.4658460130706947 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 117654 | 1.3180481541175535 | No Hit |
AACATTCAACGCTGTCGGTGA | 109914 | 1.23133888190522 | No Hit |
TCCTTCATTCCACCGGAGTCTGT | 109407 | 1.2256590884928618 | No Hit |
TTCACAGTGGCTAAGTTCTG | 78996 | 0.8849723084864964 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 76694 | 0.8591835817897533 | No Hit |
TTCACAGTGGTTAAGTTCTG | 76357 | 0.855408255596529 | No Hit |
CCTGTCTGAGGGTCGCT | 75098 | 0.84130399542659 | No Hit |
TAACGGAACCCATAATGCAGCTG | 60445 | 0.6771501238855926 | No Hit |
TTGGTCCCCTTCAACCAGCTGT | 56050 | 0.6279140448968064 | No Hit |
AAGCTGCCAGCTGAAGAACT | 55986 | 0.6271970690025442 | No Hit |
ACCCTGTAGAACCGAATTTGCG | 51502 | 0.5769639454107998 | No Hit |
ACAGTAGTCTGCACATTGGTT | 48501 | 0.5433444976189118 | No Hit |
TTCAAGTAATCCAGGATAGGC | 46275 | 0.5184071797966051 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 43595 | 0.4883838142243761 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 40866 | 0.45781151398310244 | No Hit |
TTTGGTCCCCTTCAACCAGCTGT | 39033 | 0.43727687626149947 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 36999 | 0.4144904861219793 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 34874 | 0.39068464588280516 | No Hit |
TTCACAGTGGCTAAGTTCAGT | 30999 | 0.3472739960348992 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 27921 | 0.31279193662022714 | No Hit |
TCCTTCATTCCACCGGAGTCT | 27858 | 0.31208616347431284 | No Hit |
AACATTCATTGCTGTCGGTGGG | 27536 | 0.30847887850630623 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 26247 | 0.2940385358859318 | No Hit |
TTCACGTAATCCAGGATAGGCT | 25477 | 0.2854124196580899 | No Hit |
TTAGGTAGTAGGTTGTATAGTT | 23461 | 0.26282767898883097 | No Hit |
CACCACGTTCCCGTGG | 23378 | 0.2618978508759597 | No Hit |
CATTGCACTTGTCTCGGTCTGA | 23166 | 0.2595228682262162 | No Hit |
TTCCAGTGATGACAGCCTATAATCTGACT | 22765 | 0.2550305661387297 | No Hit |
TTCACAGTGGTTAAGTTCTGCC | 22477 | 0.25180417461454985 | No Hit |
TACCCTGTAGAACCGAATTTG | 22451 | 0.2515129031575058 | No Hit |
TTCAGTCATTGTTTCTGGTTGT | 21379 | 0.2395035569286142 | No Hit |
TACCCTGTAGATCCGGATTTGT | 20344 | 0.2279087123885929 | No Hit |
AACATTCAACGCTGTCGGTGG | 20249 | 0.22684445129554742 | No Hit |
AACATTAAGAGTTTATGTGCTG | 19196 | 0.21504795728526488 | No Hit |
TATTGCACTTGTCCCGGCCTGTT | 19046 | 0.21336754503308789 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 18944 | 0.2122248647016075 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 18751 | 0.21006273427047312 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 18736 | 0.2098946930452554 | No Hit |
TATGTGCCCTTGGACTACATCG | 18269 | 0.204663009566811 | No Hit |
TTCACAGTGGCTAAGTTCTGCT | 17600 | 0.19716837092210157 | No Hit |
TATTGCACTTGTCCCGGCCTGTAT | 16305 | 0.18266081181164012 | No Hit |
ACCCTGTAGAACCGAATTTGC | 16256 | 0.18211187714259564 | No Hit |
ACCCTGTAGAACCGAATTTGTG | 15896 | 0.17807888773737082 | No Hit |
TACCCTGTAGAACCGAATGTGT | 15816 | 0.1771826678695431 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 15758 | 0.17653290846536798 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 15693 | 0.17580472982275797 | No Hit |
TTCACAGTGGTTAAGTTCTGC | 15270 | 0.17106596727161882 | No Hit |
ACAGTAGTCTGCACATTGGTTA | 14953 | 0.1675146960453514 | No Hit |
TTCACAGTGGTTAAGTTCTGCCT | 14780 | 0.16557662058117392 | No Hit |
TATTGCACTTGTCCCGGCCTGTA | 14374 | 0.16102830475194818 | No Hit |
AACCCGTAGATCCGAACTTGTG | 14368 | 0.16096108826186112 | No Hit |
CTGTCTGAGGGTCGCT | 14279 | 0.15996404365890277 | No Hit |
TGAGATGAAGCACTGTAGCTC | 14143 | 0.1584404698835956 | No Hit |
TCCAGCATCAGTGATTTTGTT | 13862 | 0.1552924975978507 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 13718 | 0.15367930183576076 | No Hit |
TCCAGTGATGACAGCCTATAATCTGACT | 13298 | 0.14897414752966515 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 13261 | 0.14855964584079484 | No Hit |
CATTATTACTTTTGGTACGCG | 12349 | 0.13834273934755864 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 12315 | 0.13796184590373187 | No Hit |
TTTAAGTAATCCAGGATAGGCT | 12189 | 0.13655029961190318 | No Hit |
TACAGTAGTCTGCACATTGGTT | 12160 | 0.13622541990981563 | No Hit |
AATATTCAACGCTGTCGGTGAG | 12092 | 0.13546363302216208 | No Hit |
TGGACGGAGAACTGATAAGGGC | 11984 | 0.13425373620059464 | No Hit |
CTGGACAACTCTTAGCGG | 11723 | 0.13132981888180661 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 11712 | 0.13120658864998033 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 11271 | 0.12626617662857995 | No Hit |
TTCAAGTAATCCAGGATGGGCT | 11105 | 0.12440652040283738 | No Hit |
TACCCTGTAGAACCGAATTTGTG | 10959 | 0.12277091914405178 | No Hit |
ACCACGTTCCCGTGG | 10677 | 0.119611744109959 | No Hit |
AACATTCAACGCTGTCGGTGT | 10567 | 0.11837944179169588 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 10470 | 0.11729277520195473 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 10400 | 0.11650858281760548 | No Hit |
TATTGCACTTGTCCCGGCCTGTTT | 10337 | 0.11580280967169114 | No Hit |
AATATTCAACGCTGTCGGTGAGT | 10242 | 0.1147385485786457 | No Hit |
ACCCTGTAGAACCGAATTTGT | 9978 | 0.11178102301481417 | No Hit |
TTCCCTTTGTCATCCTATGCC | 9924 | 0.11117607460403046 | No Hit |
TTTCCTTTGTCATCCTATGCCT | 9875 | 0.11062713993498596 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 9864 | 0.11050390970315967 | No Hit |
TTTGGTCCCCTTCAACCAGCTG | 9728 | 0.1089803359278525 | No Hit |
TTCCATTTGTCATCCTATGCCT | 9687 | 0.10852102324559079 | No Hit |
AACATTCAACGCTGTCGGTG | 9626 | 0.10783765559637215 | No Hit |
CTTTCAGTCGGATGTTTGCAGC | 9591 | 0.1074455594041975 | No Hit |
CCACGTTCCCGTGG | 9118 | 0.10214665943566605 | No Hit |
TGAGATGAAGCACTGTAGCT | 9000 | 0.10082473513062012 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGTGT | 5 | 0.0030465699 | 1638.986 | 23 |
AAGCAAC | 5 | 0.0030465699 | 1638.986 | 23 |
CAACCCG | 385 | 0.0 | 1468.7019 | 23 |
TAACTGC | 175 | 0.0 | 1404.8452 | 23 |
TAACTAA | 75 | 0.0 | 1311.189 | 23 |
AATAACC | 75 | 0.0 | 1092.6575 | 23 |
GCTGAGC | 100 | 0.0 | 983.39166 | 23 |
GATTCCT | 210 | 0.0 | 936.5635 | 23 |
TCTGACT | 4760 | 0.0 | 859.0904 | 23 |
AAATAGC | 85 | 0.0 | 771.2876 | 23 |
ATAACTA | 950 | 0.0 | 758.732 | 22 |
ACAACCC | 705 | 0.0 | 726.2985 | 22 |
TAACACC | 35 | 2.2558379E-7 | 702.4226 | 23 |
TAACACA | 25 | 7.7215656E-5 | 655.5944 | 23 |
TAATAAC | 105 | 0.0 | 600.1939 | 22 |
GGACACT | 100 | 0.0 | 573.64514 | 23 |
GACAACC | 1070 | 0.0 | 568.1433 | 21 |
GCTTCCA | 15 | 0.0010957461 | 546.3287 | 23 |
GATAAAA | 290 | 0.0 | 500.59772 | 21 |
GAGTATC | 10 | 1.837817E-4 | 491.09793 | 20 |