Basic Statistics
Measure | Value |
---|---|
Filename | nfu_skin_mzm_5_JM94_5_CAACTA_L004_R1_001_TRIMMED_prinseq_good_yPPa.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11436605 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAGT | 804816 | 7.037193292939644 | No Hit |
AACATTCAACGCTGTCGGTGAG | 725058 | 6.3398010161232285 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 518471 | 4.533434528865865 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 436336 | 3.8152581120008953 | No Hit |
TCCTTCATTCCACCGGAGTCTG | 343081 | 2.9998500429104618 | No Hit |
CCTGTCTGAGGGTCGCT | 275751 | 2.4111263788510664 | No Hit |
TACCCTGTAGAACCGAATTTGT | 251852 | 2.202157021248876 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 225928 | 1.9754813600714547 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 152067 | 1.3296515880368345 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 150670 | 1.3174364245333297 | No Hit |
ACAGTAGTCTGCACATTGGTT | 133114 | 1.1639293304262934 | No Hit |
AACATTCAACGCTGTCGGTGA | 127298 | 1.1130750777875076 | No Hit |
AACAGTAAGAGTTTATGTGCTG | 115707 | 1.0117250705082494 | No Hit |
TTGGTCCCCTTCAACCAGCTGT | 111128 | 0.971686964794185 | No Hit |
TCCTTCATTCCACCGGAGTCTGT | 110614 | 0.9671926240348424 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 103979 | 0.9091771552834079 | No Hit |
TTTGGTCCCCTTCAACCAGCTGT | 92428 | 0.8081769021488457 | No Hit |
TAACGGAACCCATAATGCAGCTG | 84323 | 0.7373079685798365 | No Hit |
CTGTCTGAGGGTCGCT | 78759 | 0.6886571670526349 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 77985 | 0.681889424352769 | No Hit |
TACCCTGTAGAACCGAATTTGC | 76073 | 0.6651711762363044 | No Hit |
TTCACAGTGGTTAAGTTCTG | 70861 | 0.619598211182427 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 70796 | 0.619029860697296 | No Hit |
TTCACAGTGGCTAAGTTCTG | 60213 | 0.526493657864375 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 59052 | 0.5163420438145762 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 57316 | 0.5011627139347735 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 54349 | 0.47521970025195415 | No Hit |
AACATTCATTGCTGTCGGTGGG | 50189 | 0.4388452692035792 | No Hit |
TATGTGCCCTTGGACTACATCG | 46608 | 0.4075335293996776 | No Hit |
ACAGTAGTCTGCACATTGGTTA | 45719 | 0.39976024353381095 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 45328 | 0.39634139676940844 | No Hit |
CACCACGTTCCCGTGG | 45061 | 0.39400678785356313 | No Hit |
ACCCTGTAGAACCGAATTTGCG | 44944 | 0.3929837569803276 | No Hit |
TGTCTGAGGGTCGCT | 43984 | 0.3845896575076257 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 43487 | 0.380243962259779 | No Hit |
TACAGTAGTCTGCACATTGGTT | 41907 | 0.3664286735442905 | No Hit |
CCACGTTCCCGTGG | 40436 | 0.35356646487309823 | No Hit |
AAGCTGCCAGCTGAAGAACT | 39573 | 0.3460205192012839 | No Hit |
TTCACAGTGGCTAAGTTCAGT | 37757 | 0.3301416810320895 | No Hit |
CCTGTCTGAGGGTCGCTT | 36588 | 0.3199201161533515 | No Hit |
TTCACAGTGGTTAAGTTCTGCC | 36169 | 0.31625644148766174 | No Hit |
ATGACCTATGAATTGACAGCC | 33084 | 0.2892816530779895 | No Hit |
TTAGGTAGTAGGTTGTATAGTT | 31129 | 0.2721874192559768 | No Hit |
GCATCGATGGTTCAGTGGTAGAATGCTC | 30470 | 0.2664252197221116 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 29857 | 0.2610652374546467 | No Hit |
TTCAGTCATTGTTTCTGGTTGT | 28885 | 0.25256621173853605 | No Hit |
TGAGATGAAGCACTGTAGCTC | 28549 | 0.24962827692309036 | No Hit |
ATGACCTATGAATTGACAGCCA | 28132 | 0.2459820899646355 | No Hit |
GCATCGATGGTTCAGTGGTAGAATGC | 27815 | 0.24321028836792039 | No Hit |
TACCCTGTAGATCCGGATTTGT | 27719 | 0.2423708784206502 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 27384 | 0.2394416874588219 | No Hit |
TTCAAGTAATCCAGGATAGGC | 26459 | 0.23135362286272892 | No Hit |
ACCACGTTCCCGTGG | 25792 | 0.22552147249992457 | No Hit |
TTCACAGTGGTTAAGTTCTGC | 25609 | 0.22392134728794078 | No Hit |
CATTGCACTTGTCTCGGTCTGA | 24529 | 0.21447798538115115 | No Hit |
AACATTCAACGCTGTCGGTGAGTT | 22631 | 0.19788215121533007 | No Hit |
TACGCCTGTCTGAGGGTCGCT | 21564 | 0.18855245940556659 | No Hit |
AACATTCATTGCTGTCGGTGGGTT | 21555 | 0.18847376472301003 | No Hit |
TTCACGTAATCCAGGATAGGCT | 21492 | 0.18792290194511396 | No Hit |
TCCTTCATTCCACCGGAGTCT | 21192 | 0.18529974585989462 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 21073 | 0.18425922727942426 | No Hit |
CACGTTCCCGTGG | 20644 | 0.1805081140775606 | No Hit |
CCTTTCTGAGGGTCGCT | 20448 | 0.17879431876855065 | No Hit |
ACCCTGTAGAACCGAATTTGTG | 20206 | 0.17667830619314037 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 20162 | 0.17629357663397485 | No Hit |
TTCAAGTAATCCAGGATGGGCT | 20138 | 0.1760837241471573 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 20080 | 0.17557658063734824 | No Hit |
AACCCGTAGATCCGAACTTGTG | 19855 | 0.17360921357343373 | No Hit |
TGGACGGAGAACTGATAAGGGC | 18905 | 0.1653025526369058 | No Hit |
TACCCTGTAGATCCGGATTTGTG | 18753 | 0.16397348688706131 | No Hit |
TAGCAGCACGTAAATATTGGAG | 18741 | 0.16386856064365254 | No Hit |
TACCCTGTAGAACCGAATGTGT | 18318 | 0.16016991056349328 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 18304 | 0.1600474966128497 | No Hit |
AACATTCAACGCTGTCGGTGG | 17930 | 0.15677729535994292 | No Hit |
ACCACAGGGTAGAACCACGGAC | 17489 | 0.15292125591467048 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 17404 | 0.15217802835719169 | No Hit |
AACATTAAGAGTTTATGTGCTG | 17324 | 0.15147852006779983 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 17228 | 0.15063911012052963 | No Hit |
CATTATTACTTTTGGTACGCG | 17174 | 0.15016694202519015 | No Hit |
TACCCTGTAGAACCGAATTTGTG | 16427 | 0.143635283372994 | No Hit |
TCACAGTGAACCGGTCTCTTT | 16393 | 0.14333799235000247 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 16204 | 0.14168540401631427 | No Hit |
CTGGACAACTCTTAGCGG | 16162 | 0.14131816216438356 | No Hit |
TTTGGTCCCCTTCAACCAGCTG | 16075 | 0.14055744689966998 | No Hit |
TATTGCACTTGTCCCGGCCTGTT | 15812 | 0.13825781339829435 | No Hit |
AATATTCAACGCTGTCGGTGAGT | 15712 | 0.13738342803655454 | No Hit |
TATTTCACTTGTCCCGGCCTGT | 15629 | 0.13665768818631052 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 15187 | 0.1327929048874207 | No Hit |
TGTAAACATCCCCGACTGGAAGCT | 15076 | 0.13182233713588953 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 14919 | 0.13044955211795808 | No Hit |
AAGTTCTGTGATACACTCAGACT | 14558 | 0.12729302096207748 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 14181 | 0.12399658814831849 | No Hit |
CCCAGTGTTCAGACTACCTGTTC | 13973 | 0.12217786659589976 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 13805 | 0.1207088991881769 | No Hit |
AATATTCAACGCTGTCGGTGAG | 13719 | 0.1199569277770807 | No Hit |
TGAGAACTGAATTCCATAGATGG | 13393 | 0.11710643149780901 | No Hit |
AAGTTCTGTGATACACTTTGACT | 12995 | 0.11362637775808467 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 12699 | 0.11103819708733492 | No Hit |
TACCCTGTAGAACCGAATTTG | 12502 | 0.10931565792470756 | No Hit |
CCAGTCTGAGGGTCGCT | 12300 | 0.1075493994939932 | No Hit |
TAACTGAACCCATAATGCAGCTG | 11788 | 0.1030725464418855 | No Hit |
TATCTTATCAGACTGGTGTTGGC | 11715 | 0.10243424512781547 | No Hit |
CAGTAGTCTGCACATTGGTT | 11666 | 0.10200579630056297 | No Hit |
TTCACAGTGGCTAAGTTCTGCT | 11468 | 0.10027451328431819 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAACTGC | 295 | 0.0 | 1980.6047 | 23 |
GATTCCT | 790 | 0.0 | 1908.1498 | 23 |
CAACCCG | 150 | 0.0 | 1869.6909 | 23 |
AATAACC | 65 | 0.0 | 1797.7797 | 23 |
TAACTAA | 100 | 0.0 | 1635.9796 | 23 |
ACGCACT | 65 | 0.0 | 1618.0017 | 23 |
GAGCGCA | 45 | 0.0 | 1558.0758 | 23 |
TCGCCGT | 10 | 0.0059918044 | 1168.5568 | 23 |
ACGGCTA | 10 | 0.0059918044 | 1168.5568 | 23 |
TCTCACA | 10 | 0.0059918044 | 1168.5568 | 23 |
GATTCGC | 10 | 0.0059918044 | 1168.5568 | 23 |
TATACCC | 10 | 0.0059918044 | 1168.5568 | 23 |
CCGCACT | 10 | 0.0059918044 | 1168.5568 | 23 |
CTTACAA | 10 | 0.0059918044 | 1168.5568 | 23 |
GTGTGCT | 105 | 0.0 | 890.3289 | 23 |
AATGCTC | 4890 | 0.0 | 853.9337 | 22 |
ATAACTA | 575 | 0.0 | 846.60345 | 22 |
ACAACCC | 590 | 0.0 | 832.64923 | 22 |
TCTGACT | 3125 | 0.0 | 830.1428 | 23 |
GAGTCCC | 60 | 4.820322E-10 | 779.03784 | 23 |