Basic Statistics
Measure | Value |
---|---|
Filename | nfu_skin_mzm_5_JM95_5_CACCGG_L005_R1_001_TRIMMED_prinseq_good_R3NH.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13849408 |
Sequences flagged as poor quality | 0 |
Sequence length | 12-29 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACATTCAACGCTGTCGGTGAG | 837338 | 6.046020162017034 | No Hit |
TTCAAGTAATCCAGGATAGGCT | 817591 | 5.90343645013563 | No Hit |
AACATTCAACGCTGTCGGTGAGT | 783686 | 5.658624541929879 | No Hit |
TACCCTGTAGAACCGAATTTGT | 376533 | 2.718766029566029 | No Hit |
TCCTTCATTCCACCGGAGTCTG | 373335 | 2.6956747898538334 | No Hit |
CCTGTCTGAGGGTCGCT | 357106 | 2.578492885760893 | No Hit |
TGAGGTAGTAGGTTGTATAGTT | 347698 | 2.5105621843186365 | No Hit |
TAGCTTATCAGACTGGTGTTGGC | 320682 | 2.3154924744797754 | No Hit |
AAGCTGCCAGCTGAAGAACTGT | 295956 | 2.136957767436702 | No Hit |
AACAGTAAGAGTTTATGTGCTG | 221192 | 1.5971224185178168 | No Hit |
TATTGCACTTGTCCCGGCCTGT | 203363 | 1.4683876740435404 | No Hit |
ACAGTAGTCTGCACATTGGTT | 190093 | 1.3725713041308336 | No Hit |
AACATTCAACGCTGTCGGTGA | 179711 | 1.2976078111064386 | No Hit |
TTGGTCCCCTTCAACCAGCTGT | 155601 | 1.1235209476101795 | No Hit |
TACCCTGTAGAACCGAATTTGCG | 155375 | 1.1218891089063159 | No Hit |
TTTGGTCCCCTTCAACCAGCTGT | 142898 | 1.0317986155076087 | No Hit |
TCCTTCATTCCACCGGAGTCTGT | 140532 | 1.014714852793708 | No Hit |
TACCCTGTAGAACCGAATTTGC | 138177 | 0.9977105158574288 | No Hit |
TTCCCTTTGTCATCCTATGCCT | 130948 | 0.9455133389095044 | No Hit |
TAACGGAACCCATAATGCAGCTG | 121642 | 0.878319131041558 | No Hit |
TTCACAGTGGTTAAGTTCTG | 118109 | 0.8528090153745199 | No Hit |
CTACGCCTGTCTGAGGGTCGCT | 107741 | 0.7779466097034617 | No Hit |
CTGTCTGAGGGTCGCT | 94766 | 0.6842602947360639 | No Hit |
TGAGGTAGTAGTTTGTATAGTT | 89431 | 0.645738792589546 | No Hit |
TTCACAGTGGCTAAGTTCTG | 88645 | 0.6400634597522147 | No Hit |
TGTCTGAGGGTCGCT | 80104 | 0.5783929536915946 | No Hit |
TTCAAGTAATCCAGGATAGGTT | 72356 | 0.5224483241449743 | No Hit |
TTCACAGTGGCTAAGTTCTGC | 70843 | 0.5115236694593733 | No Hit |
ACCCTGTAGAACCGAATTTGCG | 61400 | 0.443340249633775 | No Hit |
TACAGTAGTCTGCACATTGGTT | 60939 | 0.44001158749890246 | No Hit |
TATGTGCCCTTGGACTACATCG | 59438 | 0.4291735791161615 | No Hit |
AAGCTGCCAGCTGAAGAACT | 56400 | 0.40723762344209946 | No Hit |
ACAGTAGTCTGCACATTGGTTA | 56171 | 0.4055841231625207 | No Hit |
TTCACAGTGGCTAAGTTCAGT | 55576 | 0.40128791064571134 | No Hit |
AAGCTGCCAGCTGAAGAACTGC | 51430 | 0.3713516130075741 | No Hit |
CCACGTTCCCGTGG | 51395 | 0.37109889462423234 | No Hit |
CCTTTCTGAGGGTCGCT | 47154 | 0.34047664708845315 | No Hit |
TTCAAGTAATCCAGGATAGGC | 45482 | 0.32840392888995684 | No Hit |
AACATTCATTGCTGTCGGTGGGT | 45209 | 0.3264327254998914 | No Hit |
TTCAGTCATTGTTTCTGGTTGT | 45163 | 0.326100581338928 | No Hit |
ATGACCTATGAATTGACAGCC | 44560 | 0.32174660462021193 | No Hit |
TACCCTGTAGATCCGGATTTGT | 44110 | 0.31849736826296116 | No Hit |
TTCACAGTGGTTAAGTTCTGCC | 43947 | 0.31732042264911253 | No Hit |
TAGCTTATCAGACTGGTGTTGG | 43775 | 0.31607849230811885 | No Hit |
AACATTCATTGCTGTCGGTGGG | 43746 | 0.31586909707620714 | No Hit |
TGAGATGAAGCACTGTAGCTC | 41653 | 0.30075653775237177 | No Hit |
CACCACGTTCCCGTGG | 41559 | 0.3000778083799683 | No Hit |
TGAGGTAGTAGGTTGTATAGT | 41237 | 0.2977527992532244 | No Hit |
CATTGCACTTGTCTCGGTCTGA | 39791 | 0.2873119197585918 | No Hit |
TGTAAACATCCTTGACTGGAAGCT | 39427 | 0.28468364857183787 | No Hit |
ATGACCTATGAATTGACAGCCA | 37916 | 0.2737734349367135 | No Hit |
TTCACAGTGGTTAAGTTCTGC | 36685 | 0.26488496836832304 | No Hit |
TCCTTCATTCCACCGGAGTCT | 36425 | 0.26300763180635595 | No Hit |
TGAGGTAGTAGATTGAATAGTT | 33220 | 0.2398658484174919 | No Hit |
TCCAGCATCAGTGATTTTGTTG | 32318 | 0.23335293465251367 | No Hit |
TGAGGTAGTAGGTTGTATAGTTT | 31787 | 0.22951883575095772 | No Hit |
TTCAAGTAATCCAGGATAGGCTT | 30816 | 0.22250770574453435 | No Hit |
TGAGATGAAGCACTGTAGCTCT | 30447 | 0.21984333193158873 | No Hit |
TATTGCACTTGTCCCGGCCTGTT | 29419 | 0.21242063198658023 | No Hit |
CCTGTCTGAGGGTCGCTT | 27779 | 0.20057897059571067 | No Hit |
TGAGGTAGTAGTTTGTGCTGTT | 27646 | 0.1996186407390121 | No Hit |
CACGTTCCCGTGG | 27522 | 0.19872329560945853 | No Hit |
TTTGGTCCCCTTCAACCAGCTG | 26915 | 0.19434043678978913 | No Hit |
ACCCTGTAGAACCGAATTTGTG | 26803 | 0.1935317379630956 | No Hit |
AACCCGTAGATCCGAACTTGTG | 26298 | 0.18988537271773637 | No Hit |
TGTAAACATCCTACACTCTCAGCT | 25264 | 0.18241934962129788 | No Hit |
TGGACGGAGAACTGATAAGGGC | 25148 | 0.18158176869365103 | No Hit |
TACGCCTGTCTGAGGGTCGCT | 24699 | 0.17833975286163856 | No Hit |
ACATTAGTCTGCACATTGGTT | 24360 | 0.17589199480584294 | No Hit |
CATTATTACTTTTGGTACGCG | 23927 | 0.17276550737764387 | No Hit |
TTCAAGTAATCCAGGATGGGCT | 22321 | 0.16116934384487772 | No Hit |
ACCACGTTCCCGTGG | 21860 | 0.15784068171000523 | No Hit |
TGAGGTAGTTGGTTGTATAGTT | 21601 | 0.15597056567327644 | No Hit |
TTCCCTTTGTCATCCTATGCCTG | 21550 | 0.15560231888612136 | No Hit |
TCCAGCATCAGTGATTTTGTT | 21266 | 0.1535516897184342 | No Hit |
TACCCTGTAGAACCGAATTTG | 21169 | 0.15285129877031567 | No Hit |
TGTAAACATCCCCGACTGGAAGCT | 21166 | 0.15282963719460066 | No Hit |
AACATTCAACGCTGTCGGTGAGA | 21001 | 0.15163825053027538 | No Hit |
TACCCTGTAGATCCGGATTTGTG | 20508 | 0.14807853158777617 | No Hit |
TCCCTGAGACCCTTAACCTGTG | 20326 | 0.14676439599439917 | No Hit |
TCCCTGAGACCCTTAACCTGTGA | 20153 | 0.14551524512816721 | No Hit |
TACCCTGTAGAACCGAATGTGT | 19970 | 0.14419388900955188 | No Hit |
AACATTCAACGCTGTCGGTGG | 19850 | 0.1433274259809517 | No Hit |
AGCTACATCTGGCTACTGGGTCTC | 19736 | 0.14250428610378146 | No Hit |
TTCCAGTGATGACAGCCTATAATCTGACT | 19653 | 0.14190498250899966 | No Hit |
TAGCAGCACGTAAATATTGGAG | 19305 | 0.13939223972605905 | No Hit |
TTGTTCCCCTTCAACCAGCTGT | 19117 | 0.13803478098125205 | No Hit |
TCACAGTGAACCGGTCTCTTT | 18755 | 0.13542095084497474 | No Hit |
GAAGGATCATTA | 18732 | 0.13525487876449305 | No Hit |
TACCCTGTAGAACCGAATTTGTG | 18715 | 0.13513212983544134 | No Hit |
TGAGAACTGAATTCCATAGATGG | 18571 | 0.13409237420112108 | No Hit |
TGAAATGTTTAGGACCACTTGT | 17857 | 0.12893691918094982 | No Hit |
TGAGATGAAGCACTGTAGCT | 17519 | 0.12649638165039256 | No Hit |
TGATGTAGTAGGTTGTATAGTT | 17112 | 0.12355762787839017 | No Hit |
CAGTAGTCTGCACATTGGTT | 17102 | 0.12348542262600683 | No Hit |
CCCAGTGTTCAGACTACCTGTTC | 17090 | 0.1233987763231468 | No Hit |
TACAGTACTGTGATAACTGAAG | 16931 | 0.12225071281025152 | No Hit |
GTGAAATGTTTAGGACCACTTG | 16888 | 0.12194023022500312 | No Hit |
ACCACAGGGTAGAACCACGGAC | 16712 | 0.12066941778305613 | No Hit |
AATGACACGTTTTCTCCCGGATT | 16244 | 0.11729021197151532 | No Hit |
TGTAAACATCCCCGACTGGAAGC | 15908 | 0.11486411549143472 | No Hit |
TCCCTGAGACCCTAACTTGTGA | 15697 | 0.11334058466614602 | No Hit |
TTCACAGTGGCTAAGTTCTGCT | 15516 | 0.11203366959800737 | No Hit |
GTGAAATGTTTAGGACCACT | 15423 | 0.1113621607508422 | No Hit |
CCCAGTGTTCAGACTACCTGTT | 15412 | 0.11128273497322053 | No Hit |
TTCACAGTGGTTAAGTTCTGCCT | 15386 | 0.1110950013170238 | No Hit |
TCCAGTGATGACAGCCTATAATCTGACT | 15385 | 0.11108778079178547 | No Hit |
AACATTCAACGCTGTCGGTGAGTT | 15384 | 0.11108056026654714 | No Hit |
TAATACTGTCTGGTAATGCCG | 15113 | 0.10912379792695832 | No Hit |
AAGTTCTGTGATACACTCAGACT | 14563 | 0.105152509045874 | No Hit |
TAACACTGTCTGGTAACGATGT | 14447 | 0.10431492811822714 | No Hit |
TTTTGTCCCCTTCAACCAGCTGT | 14420 | 0.1041199739367921 | No Hit |
AAGTTCTGTGATACACTTTGACT | 14385 | 0.10386725555345036 | No Hit |
TATTGCACTTGTCCCGGCCTGTA | 14244 | 0.10284916149484512 | No Hit |
TTATGTAGTAGGTTGTATAGTT | 13982 | 0.10095738388240132 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCCACA | 5 | 0.0021215745 | 1964.2307 | 23 |
CATATTT | 5 | 0.0021215745 | 1964.2307 | 23 |
TAACTGC | 255 | 0.0 | 1617.6018 | 23 |
CAACCCG | 325 | 0.0 | 1601.6036 | 23 |
GATTCCT | 675 | 0.0 | 1440.4359 | 23 |
TAACTAA | 90 | 0.0 | 1418.6112 | 23 |
AATAACC | 115 | 0.0 | 1281.0201 | 23 |
TCGGATA | 30 | 5.912807E-8 | 982.11536 | 23 |
GAGCGCA | 40 | 1.5097612E-10 | 982.11536 | 23 |
GTCCATC | 10 | 0.008483421 | 982.11536 | 23 |
AAGGTAC | 5 | 0.008704789 | 969.6554 | 22 |
ATGTATC | 5 | 0.008704789 | 969.6554 | 22 |
ATAACCA | 5 | 0.008704789 | 969.6554 | 22 |
ATAACTA | 1025 | 0.0 | 946.00525 | 22 |
ATCACTA | 85 | 0.0 | 912.6168 | 22 |
ACAACCC | 790 | 0.0 | 896.0107 | 22 |
AATGCTC | 230 | 0.0 | 864.25806 | 22 |
ACGCGCT | 35 | 1.09495886E-7 | 841.81323 | 23 |
TCTGACT | 5335 | 0.0 | 754.7653 | 23 |
GGATTCC | 985 | 0.0 | 718.62787 | 22 |