PoSeiDon (v0.1) parameter settings and executed commands

Tools executed by PoSeiDon

• TranslatorX (v1.1), Abascal et al. (2010); 20435676
• Muscle (v3.8.31), Edgar (2004); 15034147
• RAxML (v8.2.12), Stamatakis (2014); 24451623
• Newick Utilities (v1.6), Junier and Zdobnov (2010); 20472542
• MODELTEST , Posada and Crandall (1998); 9918953
• HyPhy (v2.5.14), Pond et al. (2005); 15509596
• GARD (v2.2.7), Pond et al. (2006); 17110367
• PaML/CodeML (v4.9), Yang (2007); 17483113
• Ruby (v2.0.1)
• Inkscape (v1.0)
• pdfTeX (v3.14)

The pipeline