Spike_ali_nucl-VIRULIGN

Go to Positive Selection Results

Attention! PoSeiDon detected recombination in your alignment

Before you proceed, please be aware that recombination events can have a profound impact on the calculated tree topologies and the positive selection detection. Especially, all results based on the analyses of short fragments resulting from putative recombination events should be further investigated with suspicion.


Please use the navigation or click on the alignment links below to check out the whole positive selection analysis.


Recombination test with GARD

GARD found evidence of 8 breakpoints

BPsc-AICΔ c-AICSegments
0
32017.50355559002
1-3657
1
31474.77942720425
542.7241283857693
2526 
2
31288.47907312825
186.3003540759964
10152526 
3
31173.51368417266
114.9653889555921
102315242526 
4
31112.63406896812
60.87961520453609
894152421002526 
5
31093.19876588628
19.43530308184563
8941524210024482526 
6
31082.46241408277
10.73635180351266
89410591524210024482526 
7
31072.98441134689
9.478002735879272
894105612611524210024482526 
8
31062.66404334139
10.32036800549395
786894105612611524210024482526 
9
31062.66404334139
0
786894105612611524210024482526 
Detailed recombination output

KH-test

Breakpoint LHS Raw p LHS adjusted p RHS Raw p RHS adjusted p
786 0.11970 1.00000 0.10790 1.00000
894 0.00010 0.00160 0.03260 0.52160
1056 0.19600 1.00000 0.00740 0.11840
1261 0.47740 1.00000 0.19010 1.00000
1524 0.21210 1.00000 0.00300 0.04800
2100 0.23340 1.00000 0.57780 1.00000
2448 0.34250 1.00000 0.22800 1.00000
2526 0.00350 0.05600 0.00020 0.00320

At p = 0.01 there are 0 significant breakpoints

At p = 0.05 there are 0 significant breakpoints

At p = 0.1 there are 1 significant breakpoints

Mean splits identify: 0.1486111111111111


Resulting tree topologies

Trees on nucleotide level based on the full alignment and alignment fragments are shown.

Full alignment


Go to alignment		Fragment 1


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Fragment 2


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