CCDC13
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| CCDC13 | FLJ25467 | coiled-coil domain containing 13 | NM_144719 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene clusters together with a non-coding RNA, specifically a lncRNA. Generally there is no expression in human cells and bat cells, however in Ebola-infected cells, we see very low expression after 23 h of infection. This expression occurs in only a small region of the gene and does not necessarily overlap with the exon structure, but also occurs in some intron regions. Perhaps it is the lncRNA that is being expressed and not the mRNA. Although there is evidence for two intron regions being spliced.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 2 | 2 | 2 | 3 | 4 | 32 | 3 | 3 | 3 |
Read_Max |  | R. aegyptiacus | Transcriptome | NA | NA | 4 | NA | NA | NA | NA | 2 | 5 |
Read_Max |  | R. aegyptiacus | Genome | 2 | 2 | 4 | 0 | 2 | 0 | 0 | 3 | 6 |
DESeq | | H. sapiens | Genome | 5.06 | 16.3 | 16.89 | 14.69 | 13.19 | 310.24 | 18.54 | 9.79 | 3.17 |
DESeq | | R. aegyptiacus | Transcriptome | 1.0 | 1.0 | 8.33 | 1.0 | 1.0 | 1.0 | 1.0 | 2.65 | 6.25 |
DESeq | | R. aegyptiacus | Genome | 1.72 | 2.74 | 12.27 | 0.0 | 2.23 | 0.0 | 0.0 | 2.38 | 7.71 |