FAM49A

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
FAM49A Family With Sequence Similarity 49, Member A,DKFZP566A1524, FLJ11080 family with sequence similarity 49, member A NM_030797 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens family with sequence similarity 49, member A (FAM49A), mRNA.

Low expression in human cells, no homologs found in bat cells.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome31 23 39 21 30 32 35 33 40
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 0 0 0 0 0 0 0 0 0
DESeq
humanH. sapiensGenome 129.88 107.07 129.07 174.38 136.76 3.63 150.12 129.7 144.53
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 129.88 174.38 150.12 0.43 0.21 -0.22
7h 107.07 136.76 129.7 0.35 0.28 -0.08
23h 129.07 3.63 144.53 -5.15 0.16 5.32

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 129.88 107.07 129.07 -0.28 -0.01 0.27
Ebov 174.38 136.76 3.63 -0.35 -5.59 -5.24
Marv 150.12 129.7 144.53 -0.21 -0.05 0.16

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA