CNN1
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| CNN1 | SMCC, Sm-Calp, HEL-S-14 | calponin 1, basic, smooth muscle | NM_001299 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity (by similarity).
No or very low expression in human cells in general, however, some more expression visible in Ebola-infected cells after 23 h of infection. Low expression in bat cells.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 5 | 5 | 5 | 4 | 2 | 31 | 9 | 8 | 3 |
Read_Max |  | R. aegyptiacus | Transcriptome | 21 | 22 | 8 | 17 | 24 | 20 | 18 | 26 | 16 |
Read_Max |  | R. aegyptiacus | Genome | 24 | 20 | 7 | 22 | 10 | 7 | 15 | 28 | 15 |
DESeq | | H. sapiens | Genome | 23.33 | 14.26 | 8.94 | 20.39 | 5.88 | 297.08 | 22.05 | 13.79 | 12.96 |
DESeq | | R. aegyptiacus | Transcriptome | 81.65 | 113.55 | 33.98 | 76.08 | 92.99 | 42.06 | 91.1 | 77.01 | 57.86 |
DESeq | | R. aegyptiacus | Genome | 97.97 | 89.44 | 34.59 | 136.27 | 71.43 | 37.86 | 91.09 | 82.47 | 48.8 |