IMPG2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
IMPG2 RP56, IPM200, SPACRCAN,IPM200, RP56 interphotoreceptor matrix proteoglycan 2 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene binds chondroitin sulfate and hyaluronan and is a proteoglycan. The encoded protein plays a role in the organization of the interphotoreceptor matrix and may promote the growth and maintenance of the light-sensitive photoreceptor outer segment. Defects in this gene are a cause of retinitis pigmentosa type 56 and maculopathy, IMPG2-related.

For this gene we observed only very low expression.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2 4 4 2 2 8 4 3 3
Read_Max
batR. aegyptiacusTranscriptome 15 10 16 12 11 16 12 14 10
Read_Max
bat_genomeR. aegyptiacusGenome 17 12 14 13 10 12 11 19 19
DESeq
humanH. sapiensGenome 20.28 30.58 35.75 5.56 32.71 165.49 24.68 14.59 30.36
DESeq
batR. aegyptiacusTranscriptome 101.82 60.91 142.7 84.33 96.27 166.53 86.66 110.06 95.47
DESeq
bat_genomeR. aegyptiacusGenome 243.21 276.54 314.65 157.01 215.41 369.43 233.9 266.43 280.83

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 20.28 5.56 24.68 -1.87 0.28 2.15
7h 30.58 32.71 14.59 0.1 -1.07 -1.16
23h 35.75 165.49 30.36 2.21 -0.24 -2.45

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 20.28 30.58 35.75 0.59 0.82 0.23
Ebov 5.56 32.71 165.49 2.56 4.9 2.34
Marv 24.68 14.59 30.36 -0.76 0.3 1.06

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 101.82 84.33 86.66 -0.27 -0.23 0.04
7h 60.91 96.27 110.06 0.66 0.85 0.19
23h 142.7 166.53 95.47 0.22 -0.58 -0.8

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 101.82 60.91 142.7 -0.74 0.49 1.23
Ebov 84.33 96.27 166.53 0.19 0.98 0.79
Marv 86.66 110.06 95.47 0.34 0.14 -0.21