IMPG2
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| IMPG2 | RP56, IPM200, SPACRCAN,IPM200, RP56 | interphotoreceptor matrix proteoglycan 2 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The protein encoded by this gene binds chondroitin sulfate and hyaluronan and is a proteoglycan. The encoded protein plays a role in the organization of the interphotoreceptor matrix and may promote the growth and maintenance of the light-sensitive photoreceptor outer segment. Defects in this gene are a cause of retinitis pigmentosa type 56 and maculopathy, IMPG2-related.
For this gene we observed only very low expression.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 2 | 4 | 4 | 2 | 2 | 8 | 4 | 3 | 3 |
Read_Max |  | R. aegyptiacus | Transcriptome | 15 | 10 | 16 | 12 | 11 | 16 | 12 | 14 | 10 |
Read_Max |  | R. aegyptiacus | Genome | 17 | 12 | 14 | 13 | 10 | 12 | 11 | 19 | 19 |
DESeq | | H. sapiens | Genome | 20.28 | 30.58 | 35.75 | 5.56 | 32.71 | 165.49 | 24.68 | 14.59 | 30.36 |
DESeq | | R. aegyptiacus | Transcriptome | 101.82 | 60.91 | 142.7 | 84.33 | 96.27 | 166.53 | 86.66 | 110.06 | 95.47 |
DESeq | | R. aegyptiacus | Genome | 243.21 | 276.54 | 314.65 | 157.01 | 215.41 | 369.43 | 233.9 | 266.43 | 280.83 |