LOC201617

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
LOC201617 LINC00870 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Actually annotated as lncRNA, LINC00870, this gene is upregulated in control but also in Marburg and Ebola infected human cells cells after 7 h.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome6 6 10 4 7 5 4 8 3
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA
DESeq
humanH. sapiensGenome 39.56 57.09 130.07 35.22 61.97 4.95 35.21 60.15 30.36
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 39.56 35.22 35.21 -0.17 -0.17 -0.0
7h 57.09 61.97 60.15 0.12 0.08 -0.04
23h 130.07 4.95 30.36 -4.72 -2.1 2.62

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 39.56 57.09 130.07 0.53 1.72 1.19
Ebov 35.22 61.97 4.95 0.82 -2.83 -3.65
Marv 35.21 60.15 30.36 0.77 -0.21 -0.99

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA