PPFIA4

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PPFIA4 BC144262, KIAA0897, NM_015053, NP_055868, O75335-2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 NM_015053 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 (PPFIA4), mRNA.

Very low expression.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome3 4 7 2 6 10 3 5 5
Read_Max
batR. aegyptiacusTranscriptome 7 5 10 4 9 11 3 7 6
Read_Max
bat_genomeR. aegyptiacusGenome 7 7 8 6 9 7 4 10 9
DESeq
humanH. sapiensGenome 6.07 25.48 164.82 27.24 65.22 87.85 29.07 34.57 90.16
DESeq
batR. aegyptiacusTranscriptome 22.0 15.52 71.85 32.13 34.95 30.51 17.69 24.13 29.87
DESeq
bat_genomeR. aegyptiacusGenome 102.27 168.85 318.0 82.95 169.65 125.32 76.47 144.32 232.03

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6.07 27.24 29.07 2.17 2.26 0.09
7h 25.48 65.22 34.57 1.36 0.44 -0.92
23h 164.82 87.85 90.16 -0.91 -0.87 0.04

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6.07 25.48 164.82 2.07 4.76 2.69
Ebov 27.24 65.22 87.85 1.26 1.69 0.43
Marv 29.07 34.57 90.16 0.25 1.63 1.38

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 22.0 32.13 17.69 0.55 -0.31 -0.86
7h 15.52 34.95 24.13 1.17 0.64 -0.53
23h 71.85 30.51 29.87 -1.24 -1.27 -0.03

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 22.0 15.52 71.85 -0.5 1.71 2.21
Ebov 32.13 34.95 30.51 0.12 -0.07 -0.2
Marv 17.69 24.13 29.87 0.45 0.76 0.31