TTC22

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TTC22 FLJ20619 tetratricopeptide repeat domain 22 NM_017904 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a protein with seven tetratricopeptide (TPR) repeats.Tetratricopeptide repeat containing motifs are found in a variety ofproteins and may mediate protein-protein interactions and chaperoneactivity. Alternatively spliced transcript variants have been found for thisgene.

Weak expression in human cells under all investigated conditions but no homolog was found in bat cells.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome10 9 11 6 15 5 7 14 22
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 300 318 160 235 216 156 242 450 331
DESeq
humanH. sapiensGenome 54.78 62.19 69.5 54.61 91.24 10.21 74.69 98.52 293.5
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 2273.95 2372.07 2141.18 2386.75 2550.37 2403.26 2651.65 2619.89 2261.2

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 54.78 54.61 74.69 -0.0 0.45 0.45
7h 62.19 91.24 98.52 0.55 0.66 0.11
23h 69.5 10.21 293.5 -2.77 2.08 4.85

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 54.78 62.19 69.5 0.18 0.34 0.16
Ebov 54.61 91.24 10.21 0.74 -2.42 -3.16
Marv 74.69 98.52 293.5 0.4 1.97 1.57

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA