LY6G5C
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| LY6G5C | C6orf20, G5c, NG33,G5c | lymphocyte antigen 6 complex, locus G5C |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
LY6G5C belongs to a cluster of leukocyte antigen-6 (LY6) genes located in the major histocompatibility complex (MHC) class III region on chromosome 6. Members of the LY6 superfamily typically contain 70 to 80 amino acids, including 8 to 10 cysteines. Most LY6 proteins are attached to the cell surface by a glycosylphosphatidylinositol (GPI) anchor that is directly involved in signal transduction~\citemallya02transcriptional.
The gene is very low in expression in human cells and is slightly up-regulated in Ebola infected cells.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 4 | 4 | 3 | 3 | 4 | 19 | 8 | 6 | 7 |
Read_Max |  | R. aegyptiacus | Transcriptome | 3 | NA | NA | 3 | NA | NA | 4 | 2 | 2 |
Read_Max |  | R. aegyptiacus | Genome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
DESeq | | H. sapiens | Genome | 21.3 | 21.4 | 18.87 | 4.42 | 20.51 | 108.91 | 22.93 | 16.19 | 21.66 |
DESeq | | R. aegyptiacus | Transcriptome | 6.88 | 1.0 | 1.0 | 3.75 | 1.0 | 1.0 | 9.9 | 2.65 | 3.62 |
DESeq | | R. aegyptiacus | Genome | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |