PCDH20

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PCDH20 PCDH13, FLJ22218 protocadherin 20 NM_022843 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene belongs to the protocadherin gene family, a subfamily of the cadherin superfamily. This gene encodes a protein which contains 6 extracellular cadherin domains, a transmembrane domain and a cytoplasmic tail differing from those of the classical cadherins. Although its specific function is undetermined, the cadherin-related neuronal receptor is thought to play a role in the establishment and function of specific cell-cell connections in the brain.

Very low to no expression in human cells, but expressed moderately in bat cells homolog.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome5 6 3 10 4 3 8 3 6
Read_Max
batR. aegyptiacusTranscriptome 84 52 84 65 54 43 55 77 79
Read_Max
bat_genomeR. aegyptiacusGenome 93 61 65 47 45 25 44 91 76
DESeq
humanH. sapiensGenome 56.81 50.97 10.93 115.07 28.64 4.95 60.65 16.99 40.14
DESeq
batR. aegyptiacusTranscriptome 891.55 749.84 1165.12 892.86 858.46 636.17 912.06 817.29 943.94
DESeq
bat_genomeR. aegyptiacusGenome 1077.68 998.48 1200.58 970.7 971.04 762.36 1095.29 917.44 1049.69

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 56.81 115.07 60.65 1.02 0.09 -0.92
7h 50.97 28.64 16.99 -0.83 -1.58 -0.75
23h 10.93 4.95 40.14 -1.14 1.88 3.02

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 56.81 50.97 10.93 -0.16 -2.38 -2.22
Ebov 115.07 28.64 4.95 -2.01 -4.54 -2.53
Marv 60.65 16.99 40.14 -1.84 -0.6 1.24

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 891.55 892.86 912.06 0.0 0.03 0.03
7h 749.84 858.46 817.29 0.2 0.12 -0.07
23h 1165.12 636.17 943.94 -0.87 -0.3 0.57

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 891.55 749.84 1165.12 -0.25 0.39 0.64
Ebov 892.86 858.46 636.17 -0.06 -0.49 -0.43
Marv 912.06 817.29 943.94 -0.16 0.05 0.21