SLC28A1
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| SLC28A1 | A0AV42, A8K7I2, CNT1, NM_004213, NP_004204, O00335, O00336, O00337, Q5U5S6, Q5U648, Q9UEZ9, S28A1_HUMAN,CNT1 | solute carrier family 28 (concentrative nucleoside transporter), member 1 | NONE | ![]() |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 (SLC28A1), transcript variant 1, mRNA. Sodium-dependent and pyrimidine-selective. Exhibits the transport characteristics of the nucleoside transport system cit or N2 subtype (N2/cit) (selective for pyrimidine nucleosides and adenosine). It also transports the antiviral pyrimidine nucleoside analogs 3'-azido-3'-deoxythymidine (AZT) and 2',3'-dideoxycytidine (ddC). It may be involved in the intestinal absorption and renal handling of pyrimidine nucleoside analogs used to treat acquired immunodeficiency syndrome (AIDS). It has the following selective inhibition: adenosine, thymidine, cytidine, uridine >> guanosine, inosine.
No expression. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.apg.00160/snapshots//hg19.apg.00160_igv.eps % \caption\igv of gene SLC28A1. % <- say something about the figure here \endfigure }
\sashimifigure{ \beginfigure[H] \centering \caption\sashimi of gene SLC28A1. % <- say something about the figure here \endfigure }
\ucscfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.apg.00160/snapshots//hg19.apg.00160_ucsc.eps % \caption\ucsc of gene SLC28A1. % <- say something about the figure here \endfigure }
\setcounterfigure0 \enddocument
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max | H. sapiens | Genome | 2 | 2 | 2 | 2 | 2 | 5 | 2 | 2 | 2 | |
Read_Max | R. aegyptiacus | Transcriptome | NA | NA | 2 | 1 | NA | 4 | NA | 3 | 2 | |
Read_Max | R. aegyptiacus | Genome | 22 | 14 | 13 | 16 | 15 | 12 | 10 | 19 | 26 | |
DESeq | H. sapiens | Genome | 7.09 | 7.12 | 3.98 | 5.56 | 6.69 | 64.16 | 6.26 | 7.39 | 8.61 | |
DESeq | R. aegyptiacus | Transcriptome | 1.0 | 1.0 | 3.44 | 1.92 | 1.0 | 7.42 | 1.0 | 5.13 | 4.5 | |
DESeq | R. aegyptiacus | Genome | 183.91 | 179.8 | 214.23 | 176.76 | 147.33 | 257.17 | 148.44 | 181.58 | 219.19 |
