SLC28A1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
SLC28A1 A0AV42, A8K7I2, CNT1, NM_004213, NP_004204, O00335, O00336, O00337, Q5U5S6, Q5U648, Q9UEZ9, S28A1_HUMAN,CNT1 solute carrier family 28 (concentrative nucleoside transporter), member 1 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 (SLC28A1), transcript variant 1, mRNA. Sodium-dependent and pyrimidine-selective. Exhibits the transport characteristics of the nucleoside transport system cit or N2 subtype (N2/cit) (selective for pyrimidine nucleosides and adenosine). It also transports the antiviral pyrimidine nucleoside analogs 3'-azido-3'-deoxythymidine (AZT) and 2',3'-dideoxycytidine (ddC). It may be involved in the intestinal absorption and renal handling of pyrimidine nucleoside analogs used to treat acquired immunodeficiency syndrome (AIDS). It has the following selective inhibition: adenosine, thymidine, cytidine, uridine >> guanosine, inosine.

No expression. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.apg.00160/snapshots//hg19.apg.00160_igv.eps % \caption\igv of gene SLC28A1. % <- say something about the figure here \endfigure }

\sashimifigure{ \beginfigure[H] \centering \caption\sashimi of gene SLC28A1. % <- say something about the figure here \endfigure }

\ucscfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.apg.00160/snapshots//hg19.apg.00160_ucsc.eps % \caption\ucsc of gene SLC28A1. % <- say something about the figure here \endfigure }

\setcounterfigure0 \enddocument

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2 2 2 2 2 5 2 2 2
Read_Max
batR. aegyptiacusTranscriptome NA NA 2 1 NA 4 NA 3 2
Read_Max
bat_genomeR. aegyptiacusGenome 22 14 13 16 15 12 10 19 26
DESeq
humanH. sapiensGenome 7.09 7.12 3.98 5.56 6.69 64.16 6.26 7.39 8.61
DESeq
batR. aegyptiacusTranscriptome 1.0 1.0 3.44 1.92 1.0 7.42 1.0 5.13 4.5
DESeq
bat_genomeR. aegyptiacusGenome 183.91 179.8 214.23 176.76 147.33 257.17 148.44 181.58 219.19

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 7.09 5.56 6.26 -0.35 -0.18 0.17
7h 7.12 6.69 7.39 -0.09 0.05 0.14
23h 3.98 64.16 8.61 4.01 1.11 -2.9

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 7.09 7.12 3.98 0.01 -0.83 -0.84
Ebov 5.56 6.69 64.16 0.27 3.53 3.26
Marv 6.26 7.39 8.61 0.24 0.46 0.22

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1.0 1.92 1.0 0.94 0.0 -0.94
7h 1.0 1.0 5.13 0.0 2.36 2.36
23h 3.44 7.42 4.5 1.11 0.39 -0.72

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1.0 1.0 3.44 0.0 1.78 1.78
Ebov 1.92 1.0 7.42 -0.94 1.95 2.89
Marv 1.0 5.13 4.5 2.36 2.17 -0.19